BAC Information

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BAC

Clone NameB6Ng01-230H16
Chromosome17 (Build37)
Map Location 9,607,728 - 9,699,753
singlet/doubletdoublet
Overlap geneEG667170
Upstream geneT2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165, LOC666143
Downstream gene4932702K14Rik, Qk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H16.bB6Ng01-230H16.g
ACCGA043333GA043334
length1,1941,142
definitionB6Ng01-230H16.b B6Ng01-230H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,698,546 - 9,699,753)(9,607,728 - 9,608,880)
sequence
gaattctcaagtattactagaaatgtttgctaatttgatattcaaccatg
taagagaatgtatatagctatgtggtcagaaatgaacagaacataaactt
catggaagaaatatatcaaactatgacttgcatttatgcttactgataag
aaaaatatatttgataattttctctctatgtacaggactggaaatgggat
taaaaacaggacatggatcttgttgcagatagtcaaatcctttttctcta
aaaattggagaggaagaaaactttgaatggtagaattaagacctctacaa
atatactttaaaaacattttaaacgcatctgcaaaagactaatgagcttt
tgaaattggaaaatcagctaaaatcctccaagaggaacttgatgaatgtg
gatgaagacagtattttatgggactgaatattaatcttctcttccagccc
tttttacctgtcctagttagctacgagcaccagtagcctatctagggaaa
gggctggactggttcttcagctccgcaaggagacctattatgttcttcac
atagtgtcaacagcaatcctctgctggatatgtagcctgcaggacaggat
ggaactttctcaagaacgatagctgttttacttctacatgacccagatgt
accactaggtattcgtttaccaaaagactccaaatggatatatcacaaag
acacttgctcatcagtgtatactgcagcacacttcacaatagctgaatgg
tgtaaccaacctaggtatctaaaaacagagggacggcatgtggcctttat
acacaatggaactttctctggctctacagaagaaagaaattgtgtgcttt
gtacgaaaatgaatgggactggagataatcatacaaataaattaagccaa
ttgcacaatgacagatgttttactttttttctctcatttgtaaccctaga
tattatatctaatatagattatatatatataatgtatgtgtacatgactt
gaaagtaaacataaagctgtctaaggggacaccgagaacactagagggag
agaatcagactaggagacgagatagaagtatgaggaagatttatttcatg
atacatacatgcacaaaagtttaaatagaagtcccaattgaatagtttca
tttaatactggaccttggccagttttctgaactccacagtgtta

gaattcactggtatctgtaaaatctcattgcattaaaatgggtctcttag
acgttttccccatttggttaccttggttaaagctgtaataatcttgttta
tcttttcaagagccaactgtgcaatccaatctttgcataattcctttaat
ttctatgtcattaacttctgcccttcagctaattatttctttctgtctgc
tgattttggttttgactccttatttatttctgagaaatcaaagtacacca
ttaagttatttattacttcttataatttttaaaatttttatgtacatgag
tgttttgcttgcgtgtacatccttgtgtaaatccctgttgcccatggagg
ccagaatagggaattagaccccctgaaattagagtttgagatggctgtga
gacaccatgttgatgctggttatggaaccaaggacctcttggagagcagt
ctgcgttctgagagtctaggtactctggtttctttgattttaactgtctg
cttgttggttgttgatgagtttaagagaagctacagaaaaataaataaca
tgcaagagcaggacagggaagcattttgctttgttttattttgtctttta
ttcatgttcaacgagtgctttttaaagaaaccaaactgaggaccagttcc
ctaggactttccttatacatgtgaaaaagaaactctgggtttatttgcaa
aaagtccaacttatttgagttatgttactttcatggcatatacaaacagc
ccacctttataactgtcatagctcagtatggaaagaacttggtgggctac
agctggccctgggtatcatgaacagcaagacctaaaggctcctcacctac
cagagctggatcttgctcttaaccctttggtatgttcaggcacagttgtc
actcccctgaaacaggaggaggaacattttctagtgcatacgtggagggg
gaggaaacctctcagccttcattgaataaaaacatcttttttaacacttt
gctttgaagcactggactcagattctgaggttacagcaaggacatagctg
tttcccaagtatttaaagccaacaccaatgctagtgtttcttagatccaa
gtctcctcccttggcttggcattcaggttcacatgtaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9698546_9699753
seq2: B6Ng01-230H16.b_45_1238 (reverse)

seq1  TAACAACTGTGGAGTTTCCAGAAAACTGTGGCATAGTTCAGGTTATTAAA  50
      |||| |||||||||||  |||||||||| | ||  || |||  |||||||
seq2  TAAC-ACTGTGGAGTT--CAGAAAACTG-GCCAAGGTCCAG--TATTAAA  44

seq1  TG-AACTAT--CACTGGGACTTTCTAATTTTAAACTTTTGTGCATGTATG  97
      || ||||||   | |||||| |||||  ||||||||||||||||||||||
seq2  TGAAACTATTCAATTGGGAC-TTCTA--TTTAAACTTTTGTGCATGTATG  91

seq1  TATCATG-AATATATCTCCTTCATACTTCTTTATTCTTCTGTCCTTCTAG  146
      ||||||| |||| |||| | ||||||||||       |||   || ||||
seq2  TATCATGAAATAAATCTTCCTCATACTTCT------ATCTCGTCTCCTAG  135

seq1  TTCTTGATTCTCTCCCTCTAGTGTTTCTCGGTGTCCCCTTAGACAGCTTT  196
      |   ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  T--CTGATTCTCTCCCTCTAGTG-TTCTCGGTGTCCCCTTAGACAGCTTT  182

seq1  ATGTTTACTTTCAAGTCATGTACACATACATTATATATATATAATCTATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACTTTCAAGTCATGTACACATACATTATATATATATAATCTATA  232

seq1  TTAGATATAATATCTAGGGTTACAAATGAGAGAAAAAAAGTAAAACATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATAATATCTAGGGTTACAAATGAGAGAAAAAAAGTAAAACATCT  282

seq1  GTCATTGTGCAATTGGCTTAATTTATTTGTATGATTATCTCCAGTCCCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTGCAATTGGCTTAATTTATTTGTATGATTATCTCCAGTCCCAT  332

seq1  TCATTTTCGTACAAAGCACACAATTTCTTTCTTCTGTAGAGCCAGAGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCGTACAAAGCACACAATTTCTTTCTTCTGTAGAGCCAGAGAAA  382

seq1  GTTCCATTGTGTATAAAGGCCACATGCCGTCCCTCTGTTTTTAGATACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTGTGTATAAAGGCCACATGCCGTCCCTCTGTTTTTAGATACCT  432

seq1  AGGTTGGTTACACCATTCAGCTATTGTGAAGTGTGCTGCAGTATACACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTTACACCATTCAGCTATTGTGAAGTGTGCTGCAGTATACACTG  482

seq1  ATGAGCAAGTGTCTTTGTGATATATCCATTTGGAGTCTTTTGGTAAACGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAAGTGTCTTTGTGATATATCCATTTGGAGTCTTTTGGTAAACGA  532

seq1  ATACCTAGTGGTACATCTGGGTCATGTAGAAGTAAAACAGCTATCGTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGTGGTACATCTGGGTCATGTAGAAGTAAAACAGCTATCGTTCT  582

seq1  TGAGAAAGTTCCATCCTGTCCTGCAGGCTACATATCCAGCAGAGGATTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTTCCATCCTGTCCTGCAGGCTACATATCCAGCAGAGGATTGC  632

seq1  TGTTGACACTATGTGAAGAACATAATAGGTCTCCTTGCGGAGCTGAAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACACTATGTGAAGAACATAATAGGTCTCCTTGCGGAGCTGAAGAA  682

seq1  CCAGTCCAGCCCTTTCCCTAGATAGGCTACTGGTGCTCGTAGCTAACTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCAGCCCTTTCCCTAGATAGGCTACTGGTGCTCGTAGCTAACTAG  732

seq1  GACAGGTAAAAAGGGCTGGAAGAGAAGATTAATATTCAGTCCCATAAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTAAAAAGGGCTGGAAGAGAAGATTAATATTCAGTCCCATAAAAT  782

seq1  ACTGTCTTCATCCACATTCATCAAGTTCCTCTTGGAGGATTTTAGCTGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCATCCACATTCATCAAGTTCCTCTTGGAGGATTTTAGCTGAT  832

seq1  TTTCCAATTTCAAAAGCTCATTAGTCTTTTGCAGATGCGTTTAAAATGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTCAAAAGCTCATTAGTCTTTTGCAGATGCGTTTAAAATGTT  882

seq1  TTTAAAGTATATTTGTAGAGGTCTTAATTCTACCATTCAAAGTTTTCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTATATTTGTAGAGGTCTTAATTCTACCATTCAAAGTTTTCTTC  932

seq1  CTCTCCAATTTTTAGAGAAAAAGGATTTGACTATCTGCAACAAGATCCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAATTTTTAGAGAAAAAGGATTTGACTATCTGCAACAAGATCCAT  982

seq1  GTCCTGTTTTTAATCCCATTTCCAGTCCTGTACATAGAGAGAAAATTATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTTTTAATCCCATTTCCAGTCCTGTACATAGAGAGAAAATTATC  1032

seq1  AAATATATTTTTCTTATCAGTAAGCATAAATGCAAGTCATAGTTTGATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTTCTTATCAGTAAGCATAAATGCAAGTCATAGTTTGATAT  1082

seq1  ATTTCTTCCATGAAGTTTATGTTCTGTTCATTTCTGACCACATAGCTATA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCATGAAGTTTATGTTCTGTTCATTTCTGACCACATAGCTATA  1132

seq1  TACATTCTCTTACATGGTTGAATATCAAATTAGCAAACATTTCTAGTAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCTTACATGGTTGAATATCAAATTAGCAAACATTTCTAGTAAT  1182

seq1  ACTTGAGAATTC  1208
      ||||||||||||
seq2  ACTTGAGAATTC  1194


seq1: chr17_9607728_9608880
seq2: B6Ng01-230H16.g_64_1205

seq1  GAATTCACTGGTATCTGTAAAATCTCATTGCATTAAAATGGGTCTCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTATCTGTAAAATCTCATTGCATTAAAATGGGTCTCTTAG  50

seq1  ACGTTTTCCCCATTTGGTTACCTTGGTTAAAGCTGTAATAATCTTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTCCCCATTTGGTTACCTTGGTTAAAGCTGTAATAATCTTGTTTA  100

seq1  TCTTTTCAAGAGCCAACTGTGCAATCCAATCTTTGCATAATTCCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAGAGCCAACTGTGCAATCCAATCTTTGCATAATTCCTTTAAT  150

seq1  TTCTATGTCATTAACTTCTGCCCTTCAGCTAATTATTTCTTTCTGTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCATTAACTTCTGCCCTTCAGCTAATTATTTCTTTCTGTCTGC  200

seq1  TGATTTTGGTTTTGACTCCTTATTTATTTCTGAGAAATCAAAGTACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGGTTTTGACTCCTTATTTATTTCTGAGAAATCAAAGTACACCA  250

seq1  TTAAGTTATTTATTACTTCTTATAATTTTTAAAATTTTTATGTACATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATTTATTACTTCTTATAATTTTTAAAATTTTTATGTACATGAG  300

seq1  TGTTTTGCTTGCGTGTACATCCTTGTGTAAATCCCTGTTGCCCATGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTGCGTGTACATCCTTGTGTAAATCCCTGTTGCCCATGGAGG  350

seq1  CCAGAATAGGGAATTAGACCCCCTGAAATTAGAGTTTGAGATGGCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAGGGAATTAGACCCCCTGAAATTAGAGTTTGAGATGGCTGTGA  400

seq1  GACACCATGTTGATGCTGGTTATGGAACCAAGGACCTCTTGGAGAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATGTTGATGCTGGTTATGGAACCAAGGACCTCTTGGAGAGCAGT  450

seq1  CTGCGTTCTGAGAGTCTAGGTACTCTGGTTTCTTTGATTTTAACTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTCTGAGAGTCTAGGTACTCTGGTTTCTTTGATTTTAACTGTCTG  500

seq1  CTTGTTGGTTGTTGATGAGTTTAAGAGAAGCTACAGAAAAATAAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTTGTTGATGAGTTTAAGAGAAGCTACAGAAAAATAAATAACA  550

seq1  TGCAAGAGCAGGACAGGGAAGCATTTTGCTTTGTTTTATTTTGTCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCAGGACAGGGAAGCATTTTGCTTTGTTTTATTTTGTCTTTTA  600

seq1  TTCATGTTCAACGAGTGCTTTTTAAAGAAACCAAACTGAGGACCAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCAACGAGTGCTTTTTAAAGAAACCAAACTGAGGACCAGTTCC  650

seq1  CTAGGACTTTCCTTATACATGTGAAAAAGAAACTCTGGGTTTATTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTTCCTTATACATGTGAAAAAGAAACTCTGGGTTTATTTGCAA  700

seq1  AAAGTCCAACTTATTTGAGTTATGTTACTTTCATGGCATATACAAACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAACTTATTTGAGTTATGTTACTTTCATGGCATATACAAACAGC  750

seq1  CCACCTTTATAACTGTCATAGCTCAGTATGGAAAGAACTTGGTGGGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTATAACTGTCATAGCTCAGTATGGAAAGAACTTGGTGGGCTAC  800

seq1  AGCTGGCCCTGGGTATCATGAACAGCAAGACCTAAAGGCTCCTCACCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCCTGGGTATCATGAACAGCAAGACCTAAAGGCTCCTCACCTAC  850

seq1  CAGAGCTGGATCTTGCTCTTAACCCTTTGGTATGTTCAGGCACAGTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGATCTTGCTCTTAACCCTTTGGTATGTTCAGGCACAGTTGTC  900

seq1  ACTCCCCTGAAACAGGAGGAGGAACATTTTCTAGTGCATACGT-GAAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  ACTCCCCTGAAACAGGAGGAGGAACATTTTCTAGTGCATACGTGGAGGGG  950

seq1  GAGGAAACCTCTCAGCCTTCATTGAATAAAAACATCTTTTTTAACACTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACCTCTCAGCCTTCATTGAATAAAAACATCTTTTTTAACACTTT  1000

seq1  GCTTTTGAAGCAACCTGGACTCAGGATTCTGAGGGTTACAAGCAAGGACA  1049
      || |||||||||  ||||||||| |||||||| |||||| ||||||||||
seq2  GC-TTTGAAGCA--CTGGACTCA-GATTCTGA-GGTTAC-AGCAAGGACA  1044

seq1  TAGCTGTTTTCCCAAGTATTTTAAAGCCAACACCAATGCTAGTGTTTTCC  1099
      |||||| ||||||||||| ||||||||||||||||||||||||| |||| 
seq2  TAGCTG-TTTCCCAAGTA-TTTAAAGCCAACACCAATGCTAGTG-TTTCT  1091

seq1  TAGATTCAAAGTCTCTCCTTTTGTCTTGCCCATTTCAGTTTCACATGTAA  1149
      |||| || |||||||  |  ||| |||| |   ||||| |||||||||||
seq2  TAGA-TCCAAGTCTCCTCCCTTGGCTTGGC--ATTCAGGTTCACATGTAA  1138

seq1  GTGA  1153
      ||||
seq2  GTGA  1142


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