BAC Information

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BAC

Clone NameB6Ng01-230H18
Chromosome17 (Build37)
Map Location 61,280,630 - 61,281,773
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H18.bB6Ng01-230H18.g
ACCGA043337GA043338
length1,1401,149
definitionB6Ng01-230H18.b B6Ng01-230H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcataccatttggaatgactaagatcaaaaattcagatgacag
cagatgctggcgaggatgtggagaacgaggaacactcctcctttgttagt
gggattgcaagcttgttcaaccactctggaagtcagtcttgtggtttctc
agaaaattacataatactaccagaagaaccagcaatacctctcctgggca
tatatctaaaagatgttccaactggtaataagaacaaatactctactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacattgg
agtcctactcagctattaaaaacaacaaatttatgaaattcttggataaa
tggatgtatttggatgatatcatccttagtgaggtaacccaatcacaaaa
gaagtcattagatatgcactcactgataagtggatattagcctagaaact
tagaatacccaagatacaatttgcaaaacacaagaaatcaagaagaagga
agaccaacgtgtggatacttcattcctccttagaatagggaacaaaattc
ccatgaaaggagttacagagacaaagtttggagctaagatgaaaggatgg
actatccagagactaccccacccggagatccatcccataatcagccacta
aacccaaatactattgcatatgccagcaagttttttgctgaaaggtaccc
tggcgtagctgtctcatatgaggctatgccagtgtctggaaaatacagaa
atggatgctcacagttatctgtaagaaggaacacagggcctccaatggag
aagctagagaaacacccaaggagctgaaggggttctgcaaccctataggt
ggaacaacatatgaactaaccaataaaccagagctcatttttcttcttag
ctgcataatgtagcagagaggcaagtcgctatttgggatagagccctgta
tgacactttatatacaggggaatgcaaggctctataaatg
gaattcccagtagaaggatgtggacatcaacctacctacaaatctttgat
ccaaaattgctccagtctaaaagaaatgcagggacaataatggagcagag
actgaaggaatggtcgagcagtgacaggcccaaattgggatccacctgtg
ggcagacaccaatccttctgtgtcctgtttaattaagtttagtaaactat
taggagggaagcatccaaataagtctgacctaacctctttgtttgctgac
agaagcaatagtaagtgtgccaaagagcattcattcttgggatacacctt
gattcttgtatttcagtggggaacaaacatcacactctcaactctcattc
acttctgagtgacagaaactctgattccagataacattagtcacaacgtt
ccacgctgcaagttaaaacgaatttgaaactattttcccattatatcaca
tatacactggatggaatccagtgaaacagtttgcttggattctccttaga
tctttcagacattataaattctaccagttagttgtcacagctacgtgtta
tccgggtcatttcaaactcaaaaaaggtcagtaattttaagctttcacta
tgttccttttgttccttttgggggtgttgactacagaacccattttctca
gattaaatgctctgccattagatcgaccctgttcatttcactactacaga
aatttgatgcttgttcctacaaatcttttgtgaagaagagatttgtttgt
ttgtttatttatttatttatttatttatttatttatttattttgctggtc
atctgcagtcaatgttttaggcaagaagtgcacctttaccaggtcattta
aagcaaaactctatttgtacagttttaccgtaatacagcatgaccaaagc
agcgatgggtcaccctttctgtaacactacaagtaaacctgcaaaccatt
tgtgattcatgggttgggaaatacttgtctagataacttttattccgaca
agtgtcatagctagttgttttgtacactgcacactgtcatttctaaataa
cccctgccttagtattatttccccactctctgagatccagcctcatcctg
aattatagccagcctacttccgcatgtctgagtttattctttattgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61280630_61281773
seq2: B6Ng01-230H18.g_65_1213 (reverse)

seq1  TTGCAAATAAAAGATAAACTAAGACATGCCG-AGTAAGCT-GCTATAA-T  47
      |||| ||||||  ||||||| |||||||| | |||| ||| ||||||| |
seq2  TTGC-AATAAAGAATAAACTCAGACATGCGGAAGTAGGCTGGCTATAATT  49

seq1  CAGGATGAAGCTGGATCTCAGGAGAGTGGGGAAAT-ATACTAA-GCA-GG  94
      |||||||| ||||||||||| |||||||||||||| ||||||| ||| ||
seq2  CAGGATGAGGCTGGATCTCA-GAGAGTGGGGAAATAATACTAAGGCAGGG  98

seq1  GTTATTTAGGAAATGACAGTGTGCAGTGTACAAAACAACTAGCTATGACA  144
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTA-GAAATGACAGTGTGCAGTGTACAAAACAACTAGCTATGACA  147

seq1  CTTGTCGG-ATAAAGTTTATCTAGACAAGTATTTCCCAACCCATGAATCA  193
      |||||||| |||||  ||||||||||||||||||||||||||||||||||
seq2  CTTGTCGGAATAAAAGTTATCTAGACAAGTATTTCCCAACCCATGAATCA  197

seq1  CAAATGGTTTGCAGGTTTACTTTGTAGTGTTACAG-AAGGGTGA-CCATC  241
      |||||||||||||||||||| |||||||||||||| |||||||| |||||
seq2  CAAATGGTTTGCAGGTTTAC-TTGTAGTGTTACAGAAAGGGTGACCCATC  246

seq1  GCTGCTTTGGTCATGCTGTATTACGGTAAAACTGTACAAATAGAGTTTTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTGGTCATGCTGTATTACGGTAAAACTGTACAAATAGAGTTTTG  296

seq1  CTTTAAATGACCTGGTAAAGGTGCACTTCTTGCCTAAAACATTGACTGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATGACCTGGTAAAGGTGCACTTCTTGCCTAAAACATTGACTGCA  346

seq1  GATGACCAGCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAGCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA  396

seq1  CAAACAAACAAATCTCTTCTTCACAAAAGATTTGTAGGAACAAGCATCAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAATCTCTTCTTCACAAAAGATTTGTAGGAACAAGCATCAA  446

seq1  ATTTCTGTAGTAGTGAAATGAACAGGGTCGATCTAATGGCAGAGCATTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTAGTAGTGAAATGAACAGGGTCGATCTAATGGCAGAGCATTTA  496

seq1  ATCTGAGAAAATGGGTTCTGTAGTCAACACCCCCAAAAGGAACAAAAGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAAATGGGTTCTGTAGTCAACACCCCCAAAAGGAACAAAAGGA  546

seq1  ACATAGTGAAAGCTTAAAATTACTGACCTTTTTTGAGTTTGAAATGACCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGAAAGCTTAAAATTACTGACCTTTTTTGAGTTTGAAATGACCC  596

seq1  GGATAACACGTAGCTGTGACAACTAACTGGTAGAATTTATAATGTCTGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACACGTAGCTGTGACAACTAACTGGTAGAATTTATAATGTCTGAA  646

seq1  AGATCTAAGGAGAATCCAAGCAAACTGTTTCACTGGATTCCATCCAGTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAGGAGAATCCAAGCAAACTGTTTCACTGGATTCCATCCAGTGT  696

seq1  ATATGTGATATAATGGGAAAATAGTTTCAAATTCGTTTTAACTTGCAGCG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATATAATGGGAAAATAGTTTCAAATTCGTTTTAACTTGCAGCG  746

seq1  TGGAACGTTGTGACTAATGTTATCTGGAATCAGAGTTTCTGTCACTCAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGTTGTGACTAATGTTATCTGGAATCAGAGTTTCTGTCACTCAGA  796

seq1  AGTGAATGAGAGTTGAGAGTGTGATGTTTGTTCCCCACTGAAATACAAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGAGAGTTGAGAGTGTGATGTTTGTTCCCCACTGAAATACAAGA  846

seq1  ATCAAGGTGTATCCCAAGAATGAATGCTCTTTGGCACACTTACTATTGCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTGTATCCCAAGAATGAATGCTCTTTGGCACACTTACTATTGCT  896

seq1  TCTGTCAGCAAACAAAGAGGTTAGGTCAGACTTATTTGGATGCTTCCCTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCAAACAAAGAGGTTAGGTCAGACTTATTTGGATGCTTCCCTC  946

seq1  CTAATAGTTTACTAAACTTAATTAAACAGGACACAGAAGGATTGGTGTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTTTACTAAACTTAATTAAACAGGACACAGAAGGATTGGTGTCT  996

seq1  GCCCACAGGTGGATCCCAATTTGGGCCTGTCACTGCTCGACCATTCCTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGGTGGATCCCAATTTGGGCCTGTCACTGCTCGACCATTCCTTC  1046

seq1  AGTCTCTGCTCCATTATTGTCCCTGCATTTCTTTTAGACTGGAGCAATTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCTCCATTATTGTCCCTGCATTTCTTTTAGACTGGAGCAATTT  1096

seq1  TGGATCAAAGATTTGTAGGTAGGTTGATGTCCACATCCTTCTACTGGGAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAAGATTTGTAGGTAGGTTGATGTCCACATCCTTCTACTGGGAA  1146

seq1  TTC  1144
      |||
seq2  TTC  1149