BAC Information

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BAC

Clone NameB6Ng01-230I15
Chromosome17 (Build37)
Map Location 68,264,551 - 68,380,248
singlet/doubletdoublet
Overlap geneArhgap28
Upstream genePtprm, Lrrc30, Lama1
Downstream geneD930040M24Rik, EG622645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I15.bB6Ng01-230I15.g
ACCGA043379GA043380
length1,150751
definitionB6Ng01-230I15.b B6Ng01-230I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,264,551 - 68,265,704)(68,379,499 - 68,380,248)
sequence
gaattccaggagtcattaaagatgactcttttctgggactataaggtgta
cctacaggaataaggacagatctcagagcccttccctctcagccaaccag
caacctacacaatggtggtatccacagactttgaactctactgaacaact
cacagaagcctgagtagcagcatatgcctataattaaagccttcaggagg
ctagaacaaagacagtgtgctcaagtgcaggctagactccacagtgagag
tgcattgtgataatacattcacaactgatcattttcatccatcttcatta
cagaataacagcaaagacgcatgtgtctagaaaaacttgttaacatcaca
tgctttgggagtagggaaaccagtctatccctcatgttcagtaaatgaac
tgatactgattcattgattcaaaattcataatctctggaaaagttgtgaa
tattagttatgtctatttgaatgaccctttgagaaattagctctttcatt
atttcttttaaaaactgtattatccttgatgcttcagagatgggttagtg
tgctgttcttgcagaggtcgtagcagcccataagcaacaggagtctagtt
accctctgctggcctctacctgtatctgtgcacacaccaatgaaaataaa
ccttgcagtttttaataaccctatatagaaaaaaaatgtaactttcgaag
gaacataaaatgtaatagaaaggagcagatgtgcagtgttaagaactctg
aacaagaggtaaatttgcagactcacacacaaccttgtagccctggatca
caggaagccacaagttgtgttgtgttgtatttgcaaacctatttgtgcat
attccatggagatacagcacatggtagaaaccaagcaaaccctaggaagt
gtccgcagaacgaagagtttggaaggaaggatggctgggtccatttcccc
cagctgaggacatctgtgacatcagcagtgaccaccctggctcagtgaca
gctctacccttcccttcagtctttttcttctcccacctcccaaactagtt
attaacaatgttcaggccagacattcgatgacttattcagttagccagtg
aacatgtgttcacaggtaacagaatcacagctttcaggtcaccttgcaga


gaattcccttttataagtcgtaaactaactgcaacaagatttatttttct
aggtgaagccatctatctgtcagggaaatatttgcttgccattgatcact
gtaaaacagtatcagcaacaggcagggaatagaaaaagcccacatttcca
ttgatgacaaatgaaggaagaaaacacgtgacggcgtgcgtacatgacag
aatacagctcaaccacaagaaggaaaaagttaggttgtgaggatacgaag
ggaactgagatcgctgggttaggtgcacaggcacagaaagatagacacga
cacgacatacttcacttatgtggaatccaggaactgacttgaaagcaact
gaaagaatgccgggaatcaatggctgggaaacagggaggtcagctggctg
gtgctaagtcgcttttagatggaagtgtgttccgattctcttttgcacag
tatgtttattatagatactgacagttgctgcgtatttcacaaatatgtta
agtctgtactgcagtgggaaggtcagttctggagataaggatagaacagt
tagaacaagagaggaatgaagactccgggacctgaagagagagagcgtgg
agagagagagagaacagcagagagtctggctttgaacctggagctctaat
atactgaagtccaatgaaaggagagaaaaaaggtgaggtaaactaatggc
cacttgcagcttcttccccacgtcggggcaggaggggggggggatgaaag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68264551_68265704
seq2: B6Ng01-230I15.b_46_1195

seq1  GAATTCCAGGAGTCATTAAAGATGACTCTTTTCTGGGACTATAAGGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGTCATTAAAGATGACTCTTTTCTGGGACTATAAGGTGTA  50

seq1  CCTACAGGAATAAGGACAGATCTCAGAGCCCTTCCCTCTCAGCCAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGAATAAGGACAGATCTCAGAGCCCTTCCCTCTCAGCCAACCAG  100

seq1  CAACCTACACAATGGTGGTATCCACAGACTTTGAACTCTACTGAACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACACAATGGTGGTATCCACAGACTTTGAACTCTACTGAACAACT  150

seq1  CACAGAAGCCTGAGTAGCAGCATATGCCTATAATTAAAGCCTTCAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCCTGAGTAGCAGCATATGCCTATAATTAAAGCCTTCAGGAGG  200

seq1  CTAGAACAAAGACAGTGTGCTCAAGTGCAGGCTAGACTCCACAGTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAAGACAGTGTGCTCAAGTGCAGGCTAGACTCCACAGTGAGAG  250

seq1  TGCATTGTGATAATACATTCACAACTGATCATTTTCATCCATCTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGATAATACATTCACAACTGATCATTTTCATCCATCTTCATTA  300

seq1  CAGAATAACAGCAAAGACGCATGTGTCTAGAAAAACTTGTTAACATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAACAGCAAAGACGCATGTGTCTAGAAAAACTTGTTAACATCACA  350

seq1  TGCTTTGGGAGTAGGGAAACCAGTCTATCCCTCATGTTCAGTAAATGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGAGTAGGGAAACCAGTCTATCCCTCATGTTCAGTAAATGAAC  400

seq1  TGATACTGATTCATTGATTCAAAATTCATAATCTCTGGAAAAGTTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGATTCATTGATTCAAAATTCATAATCTCTGGAAAAGTTGTGAA  450

seq1  TATTAGTTATGTCTATTTGAATGACCCTTTGAGAAATTAGCTCTTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTATGTCTATTTGAATGACCCTTTGAGAAATTAGCTCTTTCATT  500

seq1  ATTTCTTTTAAAAACTGTATTATCCTTGATGCTTCAGAGATGGGTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTAAAAACTGTATTATCCTTGATGCTTCAGAGATGGGTTAGTG  550

seq1  TGCTGTTCTTGCAGAGGTCGTAGCAGCCCATAAGCAACAGGAGTCTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTTGCAGAGGTCGTAGCAGCCCATAAGCAACAGGAGTCTAGTT  600

seq1  ACCCTCTGCTGGCCTCTACCTGTATCTGTGCACACACCAATGAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCTGGCCTCTACCTGTATCTGTGCACACACCAATGAAAATAAA  650

seq1  CCTTGCAGTTTTTAATAACCCTATATAGAAAAAAAATGTAACTTTCGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGTTTTTAATAACCCTATATAGAAAAAAAATGTAACTTTCGAAG  700

seq1  GAACATAAAATGTAATAGAAAGGAGCAGATGTGCAGTGTTAAGAACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAATGTAATAGAAAGGAGCAGATGTGCAGTGTTAAGAACTCTG  750

seq1  AACAAGAGGTAAATTTGCAGACTCACACACAACCTTGTAGCCCTGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGGTAAATTTGCAGACTCACACACAACCTTGTAGCCCTGGATCA  800

seq1  CAGGAAGCCACAAGTTGTGTTGTGTTGTATTTGCAAACCTATTTGTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCACAAGTTGTGTTGTGTTGTATTTGCAAACCTATTTGTGCAT  850

seq1  ATTCCATGGAGATACAGCACATGGTAGAAACCAAGCAAACCCTAGGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGAGATACAGCACATGGTAGAAACCAAGCAAACCCTAGGAAGT  900

seq1  GTCCGCAGAACGAAGAGTTTGGAAGGGAAGGATGGCTGGGTCCATTTCCC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCCGCAGAACGAAGAGTTTGGAA-GGAAGGATGGCTGGGTCCATTTCCC  949

seq1  CCAGCTGAGGACATCTGTGACAATCAGCAGTGACCACCCTGGCTCAGTGA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAGCTGAGGACATCTGTGAC-ATCAGCAGTGACCACCCTGGCTCAGTGA  998

seq1  CAGCTCCTACCCTTCCCTTCAGTCTTTTTCTTCTCCCACCTCCCAAACTA  1050
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCT-CTACCCTTCCCTTCAGTCTTTTTCTTCTCCCACCTCCCAAACTA  1047

seq1  GTTATTAACAATGTTCAGGCCAAGGACATTTCGAATGACTTATTCAGTTA  1100
      ||||||||||||||||||||||  |||| |||| ||||||||||||||||
seq2  GTTATTAACAATGTTCAGGCCA--GACA-TTCG-ATGACTTATTCAGTTA  1093

seq1  GCCAGTGAACATGTG-TCACA-GTAACAG-ATCACAGCTTCCAAGTCACC  1147
      ||||||||||||||| ||||| ||||||| |||||||||| || ||||||
seq2  GCCAGTGAACATGTGTTCACAGGTAACAGAATCACAGCTTTCAGGTCACC  1143

seq1  TGGCAGA  1154
      | |||||
seq2  TTGCAGA  1150


seq1: chr17_68379499_68380248
seq2: B6Ng01-230I15.g_66_816 (reverse)

seq1  CCTTTCAT-CCCCCCCCCTCCTGCCCCGACGTGGGGAAGAAGCTGCAAGT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATCCCCCCCCCCTCCTGCCCCGACGTGGGGAAGAAGCTGCAAGT  50

seq1  GGCCATTAGTTTACCTCACCTTTTTTCTCTCCTTTCATTGGACTTCAGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTAGTTTACCTCACCTTTTTTCTCTCCTTTCATTGGACTTCAGTA  100

seq1  TATTAGAGCTCCAGGTTCAAAGCCAGACTCTCTGCTGTTCTCTCTCTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCTCCAGGTTCAAAGCCAGACTCTCTGCTGTTCTCTCTCTCTC  150

seq1  TCCACGCTCTCTCTCTTCAGGTCCCGGAGTCTTCATTCCTCTCTTGTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGCTCTCTCTCTTCAGGTCCCGGAGTCTTCATTCCTCTCTTGTTCT  200

seq1  AACTGTTCTATCCTTATCTCCAGAACTGACCTTCCCACTGCAGTACAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCTATCCTTATCTCCAGAACTGACCTTCCCACTGCAGTACAGAC  250

seq1  TTAACATATTTGTGAAATACGCAGCAACTGTCAGTATCTATAATAAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATATTTGTGAAATACGCAGCAACTGTCAGTATCTATAATAAACAT  300

seq1  ACTGTGCAAAAGAGAATCGGAACACACTTCCATCTAAAAGCGACTTAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAAAAGAGAATCGGAACACACTTCCATCTAAAAGCGACTTAGCA  350

seq1  CCAGCCAGCTGACCTCCCTGTTTCCCAGCCATTGATTCCCGGCATTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCTGACCTCCCTGTTTCCCAGCCATTGATTCCCGGCATTCTTT  400

seq1  CAGTTGCTTTCAAGTCAGTTCCTGGATTCCACATAAGTGAAGTATGTCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTTTCAAGTCAGTTCCTGGATTCCACATAAGTGAAGTATGTCGT  450

seq1  GTCGTGTCTATCTTTCTGTGCCTGTGCACCTAACCCAGCGATCTCAGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTCTATCTTTCTGTGCCTGTGCACCTAACCCAGCGATCTCAGTTC  500

seq1  CCTTCGTATCCTCACAACCTAACTTTTTCCTTCTTGTGGTTGAGCTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTATCCTCACAACCTAACTTTTTCCTTCTTGTGGTTGAGCTGTAT  550

seq1  TCTGTCATGTACGCACGCCGTCACGTGTTTTCTTCCTTCATTTGTCATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGTACGCACGCCGTCACGTGTTTTCTTCCTTCATTTGTCATCA  600

seq1  ATGGAAATGTGGGCTTTTTCTATTCCCTGCCTGTTGCTGATACTGTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGTGGGCTTTTTCTATTCCCTGCCTGTTGCTGATACTGTTTTA  650

seq1  CAGTGATCAATGGCAAGCAAATATTTCCCTGACAGATAGATGGCTTCACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCAATGGCAAGCAAATATTTCCCTGACAGATAGATGGCTTCACC  700

seq1  TAGAAAAATAAATCTTGTTGCAGTTAGTTTACGACTTATAAAAGGGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAAATCTTGTTGCAGTTAGTTTACGACTTATAAAAGGGAATT  750

seq1  C  750
      |
seq2  C  751


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