BAC Information

Click to search

BAC

Clone NameB6Ng01-231O04
Chromosome17 (Build37)
Map Location 34,801,805 - 34,971,412
singlet/doubletdoublet
Overlap geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19
Upstream geneHnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1
Downstream geneDom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231O04.bB6Ng01-231O04.g
ACCGA044361GA044362
length1,0841,136
definitionB6Ng01-231O04.b B6Ng01-231O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,801,805 - 34,802,882)(34,970,276 - 34,971,412)
sequence
gaattcctgcatctcccgccccagcctcccaagtcctgagattacaggtg
taatctctgagcccagcacaaaaggaaacgtttttaacactccagaaaac
ctgcatcaatgcctcttctggtcaccctcttccaagaacactacatcccc
agctcaaaactgcaggtttattatcatctctctttgagagatgcagccct
ggctggctcccagcttacagagatctgcctgcacaggtacgcactaccat
actggctcaaacattctttaatagattacccagcacacttcttctctgtc
tagctgtcttaattgattaagagacgtccacagcattgcacttaatagta
catgcatagtttatgtggtgcaaataagccaaagttaattcatggaatct
gctgacaagagacactttggtagtttcccacaggggctgttgtagccaat
tctgctatcttatcctacaaggagtctctataggctcatcagctctgcat
atgtccagctttacgccatcatatatattctgcctgtttcccagaaatgc
ttgtaccacctggtccttccagcatcctcccctcctggctgttgattctt
gtagcctggctactattcctattggacttctagactgttcttgactctgg
ccttagtgcaagccccgggcttagattggactttacaatcatcattaaag
tcagtaaatatttacagagcacatggatgttttagttagagcagcagata
agaatagaaatgggtagtgtaacaaggagctcaagaggcaagaagaaatc
agcagtcccacactttgcccacaagaccacaaatcgtcacagtacgagcc
agaactgtgtggagtgtgtcatgtatcctgagggggctccagtctggtca
aggaggctttctctgggttgatgtcaaattgaggccagggggcgaagtga
agagcagacatatagttccacagagaggggaccatatatacagaggttca
agttaagtgaggacggtggagaagcgaggttgtttaatgaagtaataaat
gaagttcttattcatttatgggggggtgggggtg
gaattccctcctcccatcacgtggatctcaggggctgactcaagccctgg
ggctcagcagcaggccacctgacccactgaaacatcccaccagccctaag
cctgctatgtctttttagaatttcctaccagtagtttctcatcttgtttt
tttttttaacacgtcagcattagcagcattattttaagtcgtttgaactt
catgtagtcgtacatcttgctaaggtgtagtgggagagcttacagcgtgg
agtgaccagttatgaatcagtgtctttaccatcatttatcatttacccat
gtcaagaaccttaaaacacctcttcgttgtttctaaaatgcctaataaat
aaattgttattagccaggcattgcgtctcagataggtaactctgggactc
agaaggctgaggccgagggatcctactagttagaggctggtgtgggagac
agaggaaccctgtctcaaaaagctaaataaaacagtccaaagtgttgtga
tgtgtccacaccctctgctcttccctggggaggagttttttcctcctggt
ggctgtcctggtgggattaaaggtgcagcccgggctgcatgtcttctgag
ctttacttcctgtgagccctttatttttggccatgtgctgggcagatttg
ctcagatcagcaaatgccccctccctgtttcccttctcccagagtctttg
cttgctttaatatatctgtctggtagttcttgtgatcctgtgagcttttc
agtgttattgttttgaaccagggcctcttcattttgtatctctggctgcc
ctggaatttcactctgtagaccaaactgcccttgaactcagagatctgct
tgcctctgtctgtctcctgagtgctggaattaaaggtggaagccagcatg
cccgcttacttaaacaattaaaaacttttaaaagacccattgtttctgtt
gtatggatggttcctgcttacatgtgtgtccgcacaccacatgcgtgccc
tgtgcctctagagtcagaacagggttcagatctctgaactggagtacaga
acagttgtgagctgtcacgttgtgccaggatcgacccagccatctcttgg
agagcacatgtccttgaactgcttagccatctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34801805_34802882
seq2: B6Ng01-231O04.b_44_1127

seq1  GAATTCCTGCATCTCCCGCCCCAGCCTCCCAAGTCCTGAGATTACAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATCTCCCGCCCCAGCCTCCCAAGTCCTGAGATTACAGGTG  50

seq1  TAATCTCTGAGCCCAGCACAAAAGGAAACGTTTTTAACACTCCAGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGAGCCCAGCACAAAAGGAAACGTTTTTAACACTCCAGAAAAC  100

seq1  CTGCATCAATGCCTCTTCTGGTCACCCTCTTCCAAGAACACTACATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAATGCCTCTTCTGGTCACCCTCTTCCAAGAACACTACATCCCC  150

seq1  AGCTCAAAACTGCAGGTTTATTATCATCTCTCTTTGAGAGATGCAGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAACTGCAGGTTTATTATCATCTCTCTTTGAGAGATGCAGCCCT  200

seq1  GGCTGGCTCCCAGCTTACAGAGATCTGCCTGCACAGGTACGCACTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTCCCAGCTTACAGAGATCTGCCTGCACAGGTACGCACTACCAT  250

seq1  ACTGGCTCAAACATTCTTTAATAGATTACCCAGCACACTTCTTCTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCAAACATTCTTTAATAGATTACCCAGCACACTTCTTCTCTGTC  300

seq1  TAGCTGTCTTAATTGATTAAGAGACGTCCACAGCATTGCACTTAATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCTTAATTGATTAAGAGACGTCCACAGCATTGCACTTAATAGTA  350

seq1  CATGCATAGTTTATGTGGTGCAAATAAGCCAAAGTTAATTCATGGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGTTTATGTGGTGCAAATAAGCCAAAGTTAATTCATGGAATCT  400

seq1  GCTGACAAGAGACACTTTGGTAGTTTCCCACAGGGGCTGTTGTAGCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGAGACACTTTGGTAGTTTCCCACAGGGGCTGTTGTAGCCAAT  450

seq1  TCTGCTATCTTATCCTACAAGGAGTCTCTATAGGCTCATCAGCTCTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATCTTATCCTACAAGGAGTCTCTATAGGCTCATCAGCTCTGCAT  500

seq1  ATGTCCAGCTTTACGCCATCATATATATTCTGCCTGTTTCCCAGAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGCTTTACGCCATCATATATATTCTGCCTGTTTCCCAGAAATGC  550

seq1  TTGTACCACCTGGTCCTTCCAGCATCCTCCCCTCCTGGCTGTTGATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCACCTGGTCCTTCCAGCATCCTCCCCTCCTGGCTGTTGATTCTT  600

seq1  GTAGCCTGGCTACTATTCCTATTGGACTTCTAGACTGTTCTTGACTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGGCTACTATTCCTATTGGACTTCTAGACTGTTCTTGACTCTGG  650

seq1  CCTTAGTGCAAGCCCCGGGCTTAGATTGGACTTTACAATCATCATTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGCAAGCCCCGGGCTTAGATTGGACTTTACAATCATCATTAAAG  700

seq1  TCAGTAAATATTTACAGAGCACATGGATGTTTTAGTTAGAGCAGCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATATTTACAGAGCACATGGATGTTTTAGTTAGAGCAGCAGATA  750

seq1  AGAATAGAAATGGGTAGTGTAACAAGGAGCTCAAGAGGCAAGAAGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAATGGGTAGTGTAACAAGGAGCTCAAGAGGCAAGAAGAAATC  800

seq1  AGCAGTCCCACACTTTGCCCACAAGACCACAAATCGTCACAGTACGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCCACACTTTGCCCACAAGACCACAAATCGTCACAGTACGAGCC  850

seq1  AGAACTGTGTGGAGTGTGTCATGTATCCTGAGGGGGCTCCAGTCTGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGTGGAGTGTGTCATGTATCCTGAGGGGGCTCCAGTCTGGTCA  900

seq1  AGGAGGC-TTCTCTGGG-TGATGTCAAATTGAGGCCAGGGGGCGAAGTGA  948
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGAGGCTTTCTCTGGGTTGATGTCAAATTGAGGCCAGGGGGCGAAGTGA  950

seq1  AGAGCAGACATATAG-TCCACAGAGAGGGGACCATATATACAGAGGTTCA  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGCAGACATATAGTTCCACAGAGAGGGGACCATATATACAGAGGTTCA  1000

seq1  AGTTAAGTGAGGAACGTGGAG-AGCGAGG-TGTTTAATGAAGTAATAAAT  1045
      |||||||||||||  |||||| ||||||| ||||||||||||||||||||
seq2  AGTTAAGTGAGGACGGTGGAGAAGCGAGGTTGTTTAATGAAGTAATAAAT  1050

seq1  GAAGTTCTTATCCA-TTATGGGGGGTGGGTGGTG  1078
      ||||||||||| || ||||||||||  || ||||
seq2  GAAGTTCTTATTCATTTATGGGGGGGTGGGGGTG  1084

seq1: chr17_34970276_34971412
seq2: B6Ng01-231O04.g_68_1203 (reverse)

seq1  AGAGAGATGGCTTAGCAGTTAAGAGACTGGCTGCTCTTCCAGAGGATGCT  50
      |||||||||||| ||||||| |  |||  | |||||| | ||||   |||
seq2  AGAGAGATGGCTAAGCAGTTCAAGGACATG-TGCTCTCCAAGAGATGGCT  49

seq1  GGTTCGATTCCTGGCAACAACGTGACAGCTCACAACTG-TCTGTAACTCC  99
      || |||| ||||||| |||||||||||||||||||||| ||||| |||||
seq2  GGGTCGA-TCCTGGC-ACAACGTGACAGCTCACAACTGTTCTGT-ACTCC  96

seq1  AGTTTCAGGAGATCTG-ACCCTGTTCTGACCTCTAGAGGCACAGGGCACG  148
      || |||| |||||||| |||||||||||| ||||||||||||||||||||
seq2  AG-TTCA-GAGATCTGAACCCTGTTCTGA-CTCTAGAGGCACAGGGCACG  143

seq1  CATGTGGTGTGCGGACACACATGTAAGCAG--AACATCCATAC-ACAGAA  195
      ||||||||||||||||||||||||||||||  | ||||||||| ||||||
seq2  CATGTGGTGTGCGGACACACATGTAAGCAGGAACCATCCATACAACAGAA  193

seq1  ACAATGGGTCTTTTAAAAGTTTTTAATTGTTTAAGT-AGCGGGCATGCTG  244
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAATGGGTCTTTTAAAAGTTTTTAATTGTTTAAGTAAGCGGGCATGCTG  243

seq1  GCTTCCACCTTTAATTCCAGCACTCAGGAGACAGACAGAGGCAAGCAGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACCTTTAATTCCAGCACTCAGGAGACAGACAGAGGCAAGCAGAT  293

seq1  CTCTGAGTTCAAGGGCAGTTTGGTCTACAGAGTGAAATTCCAGGGCAGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTCAAGGGCAGTTTGGTCTACAGAGTGAAATTCCAGGGCAGCC  343

seq1  AGAGATACAAAATGAAGAGGCCCTGGTTCAAAACAATAACACTGAAAAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACAAAATGAAGAGGCCCTGGTTCAAAACAATAACACTGAAAAGC  393

seq1  TCACAGGATCACAAGAACTACCAGACAGATATATTAAAGCAAGCAAAGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGATCACAAGAACTACCAGACAGATATATTAAAGCAAGCAAAGAC  443

seq1  TCTGGGAGAAGGGAAACAGGGAGGGGGCATTTGCTGATCTGAGCAAATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAAGGGAAACAGGGAGGGGGCATTTGCTGATCTGAGCAAATCT  493

seq1  GCCCAGCACATGGCCAAAAATAAAGGGCTCACAGGAAGTAAAGCTCAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACATGGCCAAAAATAAAGGGCTCACAGGAAGTAAAGCTCAGAA  543

seq1  GACATGCAGCCCGGGCTGCACCTTTAATCCCACCAGGACAGCCACCAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAGCCCGGGCTGCACCTTTAATCCCACCAGGACAGCCACCAGGA  593

seq1  GGAAAAAACTCCTCCCCAGGGAAGAGCAGAGGGTGTGGACACATCACAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACTCCTCCCCAGGGAAGAGCAGAGGGTGTGGACACATCACAAC  643

seq1  ACTTTGGACTGTTTTATTTAGCTTTTTGAGACAGGGTTCCTCTGTCTCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGACTGTTTTATTTAGCTTTTTGAGACAGGGTTCCTCTGTCTCCC  693

seq1  ACACCAGCCTCTAACTAGTAGGATCCCTCGGCCTCAGCCTTCTGAGTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCCTCTAACTAGTAGGATCCCTCGGCCTCAGCCTTCTGAGTCCC  743

seq1  AGAGTTACCTATCTGAGACGCAATGCCTGGCTAATAACAATTTATTTATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACCTATCTGAGACGCAATGCCTGGCTAATAACAATTTATTTATT  793

seq1  AGGCATTTTAGAAACAACGAAGAGGTGTTTTAAGGTTCTTGACATGGGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTAGAAACAACGAAGAGGTGTTTTAAGGTTCTTGACATGGGTA  843

seq1  AATGATAAATGATGGTAAAGACACTGATTCATAACTGGTCACTCCACGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAATGATGGTAAAGACACTGATTCATAACTGGTCACTCCACGCT  893

seq1  GTAAGCTCTCCCACTACACCTTAGCAAGATGTACGACTACATGAAGTTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCTCCCACTACACCTTAGCAAGATGTACGACTACATGAAGTTCA  943

seq1  AACGACTTAAAATAATGCTGCTAATGCTGACGTGTTAAAAAAAAAAACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTTAAAATAATGCTGCTAATGCTGACGTGTTAAAAAAAAAAACAA  993

seq1  GATGAGAAACTACTGGTAGGAAATTCTAAAAAGACATAGCAGGCTTAGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAACTACTGGTAGGAAATTCTAAAAAGACATAGCAGGCTTAGGG  1043

seq1  CTGGTGGGATGTTTCAGTGGGTCAGGTGGCCTGCTGCTGAGCCCCAGGGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGATGTTTCAGTGGGTCAGGTGGCCTGCTGCTGAGCCCCAGGGC  1093

seq1  TTGAGTCAGCCCCTGAGATCCACGTGATGGGAGGAGGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAGCCCCTGAGATCCACGTGATGGGAGGAGGGAATTC  1136