BAC Information

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BAC

Clone NameB6Ng01-234F05
Chromosome17 (Build37)
Map Location 52,304,764 - 52,305,757
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234F05.bB6Ng01-234F05.g
ACCGA046123GA046124
length1,234991
definitionB6Ng01-234F05.b B6Ng01-234F05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagtaaagacaccctccattaggaaatattgggaaagggagtc
ctgacaagagcccaaatgaaattataccacctggttaaaatcagcagggc
cttgatagactgtcaggcctcacagaggacaggaaagagaggaagtacca
cagtcgcagaatgatgctgggtgctgtcacacactggtgctgattaaata
gtagcctgaattatttgtcaccatgatgatcacaaaaaccatgacttttc
cctttcaaagctacataagcacaattaatacgaatggcaaatttctagtg
tctatgtgatagttttaattgtcaacttgacacagtcacttgggaagaga
gtttcatctagatcaaactgtcctgtggagattattttgattacactaat
tgctgtgggaaaactctgcccattatggccagcaccattctctaggcagg
agattttggtctatataagagtagaaaacaaaccgagcactcacaacctc
ttatgaatttatttctgttcttaattgtgatgtaactagctacttcaaac
tcctgctgctgtgaatgccctacaaaaaaaatggactatagcccagaatt
gtgagctaaaataaaccctttcttctctaagctttttgtttggggggggg
gggcgtgatgaggaccaaagtgtggacactttgccccttcttagatttgg
aaacaaaacacccatgggaggagttacagagacaaagttttggagctgtg
acaaaaggatggacaatctagagactgccatatccggggatccatcccat
aaatcagctttccaaatgctgacaccattggcatacactaacaagatttt
gcttgaaaagacgccagatatagctgtctcttgttgagacaatgcggggg
gcctagcaaatacagaatgtgggatggctcacagtctagctattggaatg
gatccacaccggccccccattggaggagctaggagaaagtacccaaggga
gctaaagggtacctgccactcttataggtggaacaaccattatgaaacta
accagtaccttggagctctttgactctagcctgcatacgatatcaacaga
atggcctaagtctagtcatcatgtaaaagaaaggcccattggaactttgc
aaattttgttatgctccagttacacggtacgcccatggctcaaatataac
gcactggcaatacgtgccatcgaggagagctcgc
gaattcttagtattctcataatcatcattagcaagaatcttgctttgttc
agagttactgttacaatcagcagtaatgatagccattattattaacaatg
caggacggacaacacagttgggactgcatctgtggcagtgtgaacatcat
cgtagagtatatgcctttcgatgtctaaaactgtgtgcacagctagtggg
ctcaacaccattcagatcatctcatagccttggcataaagaaacctaggc
accatcaggacacagaatttcggggccatttgggggactggatgtacagt
ctcttgcaggctgctcctgtgctctaccactgtgtctcatacccagacct
ttttttaaaaaaagtttgaggtaggatcttttgctaagttgcccagcctc
aaactccctctgtagtctttgaattcacaattctcttatgcagttcctag
ttacaggggataacaggaagtggtagacctggccatccagtgacttggtc
tcacatcttgaatgtggatgtacccggagatagaagatcagggtagactc
agagcagtccttgagaggtcattatggacaggccaatggcaggctcaagt
gaggtttagaggagagagaatctctaaagaaagagccgtctgttccagtg
ggccctgtgagcttctccttagttttgaaacactcccttgaggtctttat
ggaaggaaaccaacgactgttgcctctgctttccatttctacttgtccag
caaaagagctgtgttctctgaagtgtggatctcccagagctggaggaagt
gacgggcgaggttagctaggacactgtgcagagcaaccaaagctgagctg
ctttcaagtagagtgaagtccctggagagtgcactgggcactgacagcca
ggcaggtctcagatgctaccttctttgtggaagtaaaacttaaaaatatt
ggttttggtttttttgtatggttttgattttggggttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52304764_52305757
seq2: B6Ng01-234F05.g_65_1055

seq1  GAATTCTTAGTATTCTCATAATCATCATTAGCAAGAATCTTGCTTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTATTCTCATAATCATCATTAGCAAGAATCTTGCTTTGTTC  50

seq1  AGAGTTACTGTTACAATCAGCAGTAATGATAGCCATTATTATTAACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACTGTTACAATCAGCAGTAATGATAGCCATTATTATTAACAATG  100

seq1  CAGGACGGACAACACAGTTGGGACTGCATCTGTGGCAGTGTGAACATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGGACAACACAGTTGGGACTGCATCTGTGGCAGTGTGAACATCAT  150

seq1  CGTAGAGTATATGCCTTTCGATGTCTAAAACTGTGTGCACAGCTAGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGTATATGCCTTTCGATGTCTAAAACTGTGTGCACAGCTAGTGGG  200

seq1  CTCAACACCATTCAGATCATCTCATAGCCTTGGCATAAAGAAACCTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCATTCAGATCATCTCATAGCCTTGGCATAAAGAAACCTAGGC  250

seq1  ACCATCAGGACACAGAATTTCGGGGCCATTTGGGGGACTGGATGTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGGACACAGAATTTCGGGGCCATTTGGGGGACTGGATGTACAGT  300

seq1  CTCTTGCAGGCTGCTCCTGTGCTCTACCACTGTGTCTCATACCCAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGGCTGCTCCTGTGCTCTACCACTGTGTCTCATACCCAGACCT  350

seq1  TTTTTTAAAAAAAGTTTGAGGTAGGATCTTTTGCTAAGTTGCCCAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAAAGTTTGAGGTAGGATCTTTTGCTAAGTTGCCCAGCCTC  400

seq1  AAACTCCCTCTGTAGTCTTTGAATTCACAATTCTCTTATGCAGTTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCTCTGTAGTCTTTGAATTCACAATTCTCTTATGCAGTTCCTAG  450

seq1  TTACAGGGGATAACAGGAAGTGGTAGACCTGGCCATCCAGTGACTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGGATAACAGGAAGTGGTAGACCTGGCCATCCAGTGACTTGGTC  500

seq1  TCACATCTTGAATGTGGATGTACCCGGAGATAGAAGATCAGGGTAGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTGAATGTGGATGTACCCGGAGATAGAAGATCAGGGTAGACTC  550

seq1  AGAGCAGTCCTTGAGAGGTCATTATGGACAGGCCAATGGCAGGCTCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCCTTGAGAGGTCATTATGGACAGGCCAATGGCAGGCTCAAGT  600

seq1  GAGGTTTAGAGGAGAGAGAATCTCTAAAGAAAGAGCCGTCTGTTCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAGAGGAGAGAGAATCTCTAAAGAAAGAGCCGTCTGTTCCAGTG  650

seq1  GGCCCTGTGAGCTTCTCCTTAGTTTTGAAACACTCCCTTGAGGTCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGAGCTTCTCCTTAGTTTTGAAACACTCCCTTGAGGTCTTTAT  700

seq1  GGAAGGAAACCAACGACTGTTGCCTCTGCTTTCCATTTCTACTTGTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAACCAACGACTGTTGCCTCTGCTTTCCATTTCTACTTGTCCAG  750

seq1  C-AAAGAGCTGTGTTCTCTGAAGTGTGGATCTCCCAGAGCTGGAGGAAGT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGCTGTGTTCTCTGAAGTGTGGATCTCCCAGAGCTGGAGGAAGT  800

seq1  GACGGGCGAGGTTAGCTAGGACACTGTGCAGAGCAAACCAAAGCTGAGCT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACGGGCGAGGTTAGCTAGGACACTGTGCAGAGC-AACCAAAGCTGAGCT  849

seq1  GCTTTCAAGTAGAGTGAAGTCCCTGGAGAGTGCACTGGGCACTGACAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGTAGAGTGAAGTCCCTGGAGAGTGCACTGGGCACTGACAGCC  899

seq1  AGGCAGGTCTCAGATGCTACCTTCTTTGTGGCAGTTAAAACTTTAAAATA  949
      ||||||||||||||||||||||||||||||| || |||||||| ||||||
seq2  AGGCAGGTCTCAGATGCTACCTTCTTTGTGGAAG-TAAAACTTAAAAATA  948

seq1  TTGGTTTTGGTTTTTTTTGTTTTGTTTTTGTTTTTGGGGTTGGTT  994
      |||||||||||||||||   | || ||||| ||||||||||||||
seq2  TTGGTTTTGGTTTTTTT--GTATGGTTTTGATTTTGGGGTTGGTT  991