BAC Information

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BAC

Clone NameB6Ng01-235C08
Chromosome17 (Build37)
Map Location 30,237,592 - 30,374,649
singlet/doubletdoublet
Overlap geneZfand3, Btbd9
Upstream geneCdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C08.bB6Ng01-235C08.g
ACCGA046701GA046702
length6351,077
definitionB6Ng01-235C08.b B6Ng01-235C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,237,592 - 30,238,225)(30,373,576 - 30,374,649)
sequence
gaattcttgtacctttcaggtttgagatagagaggcttagggaccttttg
gaaagcagggtcttcaattacatgtaattaaaaaaaaaaaaaaatcccca
aactgggattattggaggaaactgagtatttacaatggcaatttacactg
atctaaggatactgtacgagggaggtccgaccttcattatggagaataca
attcatgaactgatattttattgctagacaaactggtgactccctaaggc
ttggaaaaagtgtatttttttttttttttacttggttttatacttataaa
ccccaggtaaaatttcaaatgtaggaacatttcttaaagcaggaaagttg
gtcatgtctggggtgtgcatgtccaaaatgactaaaatagtttgtgagag
gtttctgagcatgagaaccctgctgtgagctgagatcttgtcttcctcat
tctgctccccccttctctctctctctctctctctctctctccctcttccc
cctcccctccccccctcccctcttccctctcccctctctctctgcagccc
acatcatttaccactaactaggtgtctcaggggtcccagtttttaagctg
ttacagactttggcagtacttttaagtgttcagtt
gaattcttttccctcgtgtgctcagagtcgtcttagctgaactttacaac
ttaagaacctgagagaacttcgctgtgacttagtttttctagaaggctga
ggaccgaggctcctgcgatctccttctcagctcctgggtctgggagtgaa
agaaaggccgggcttagagggaacttggatgtcttgtgatgtgatggagc
cctgggacttacgtgtgcactgctgtgtggacggcacaagggccacggga
gaatccctggtctctgcctcttacctggtggtcactggcaaggacacaga
gcgattgtcatgtgaccaacgtgtgacagaaaccctgttcagaacaatgc
ctctcttcacaagtcttcccagacacttaggactgtttcagcagaactga
aagatgtaagaaagaaataccagaccaagaaggtgctgtgcagacacccc
atctgtgtgtgtgtgtcacatagaagcttctgcctaggcatgtgcacaca
tacgtccacacatgcacacttaccagtcttgcacaggcacgagtgtgcag
acagaaacaggactttgctccccactgcgagacccttcagctcactgcac
actcacttggctgtggctgcagagaggagagcccttggcccgagtctgtt
tgtgtgtttgagcccagaaagtgatttctgtagcagagagctctaagtga
gacagagtcagagaataagagagagagagataattatctaaattatgttc
gtgctattatcgaagacgaatatagttaaaatgtaattaaatatgacggg
ctagcaggatgtaagccaagctttggaatgctaatcatctgttagcacat
cccccgtaggggaatcaatgggtgctccatggcagagtgagagtggggag
ctcagtgaagtgtacagagtgaaaacagacacacacacacacacacacac
acacacacacacacacacacacctgcatgctcatttcagacctccaccaa
tgtccctgaaccactgcctttcttgcaactgcaacaggcaattagaagcc
ttcagcgttggtggtagatggagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30237592_30238225
seq2: B6Ng01-235C08.b_46_680

seq1  GAATTCTTGTACCTTTCAGGTTTGAGATAGAGAGGCTTAGGGACCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTACCTTTCAGGTTTGAGATAGAGAGGCTTAGGGACCTTTTG  50

seq1  GAAAGCAGGGTCTTCAATTACATGTAATTAAAAAAAAAAAAAAATCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGGTCTTCAATTACATGTAATTAAAAAAAAAAAAAAATCCCCA  100

seq1  AACTGGGATTATTGGAGGAAACTGAGTATTTACAATGGCAATTTACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGATTATTGGAGGAAACTGAGTATTTACAATGGCAATTTACACTG  150

seq1  ATCTAAGGATACTGTACGAGGGAGGTCCGACCTTCATTATGGAGAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGATACTGTACGAGGGAGGTCCGACCTTCATTATGGAGAATACA  200

seq1  ATTCATGAACTGATATTTTATTGCTAGACAAACTGGTGACTCCCTAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAACTGATATTTTATTGCTAGACAAACTGGTGACTCCCTAAGGC  250

seq1  TTGGAAAAAGTGTATTTTTTTTTTTTTTTACTTGGTTTTATACTTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAAGTGTATTTTTTTTTTTTTTTACTTGGTTTTATACTTATAAA  300

seq1  CCCCAGGTAAAATTTCAAATGTAGGAACATTTCTTAAAGCAGGAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTAAAATTTCAAATGTAGGAACATTTCTTAAAGCAGGAAAGTTG  350

seq1  GTCATGTCTGGGGTGTGCATGTCCAAAATGACTAAGATAGTTTGTGAGAG  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCATGTCTGGGGTGTGCATGTCCAAAATGACTAAAATAGTTTGTGAGAG  400

seq1  GTTTCTGAGCATGAGAACCCTGCTGTGAGCTGAGATCTTGTCTTCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGCATGAGAACCCTGCTGTGAGCTGAGATCTTGTCTTCCTCAT  450

seq1  TCTGCTCCCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTTCCC  500

seq1  CCTCCCCTCCCCCCCTCCCCTCTTCCCTCTCCCCTCTCTCTCTGCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCCCCCCTCCCCTCTTCCCTCTCCCCTCTCTCTCTGCAGCCC  550

seq1  ACATCATTTACCACTAACTAGGTGTCTCAGGGGTCCCAG-TTCTAAGCTG  599
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  ACATCATTTACCACTAACTAGGTGTCTCAGGGGTCCCAGTTTTTAAGCTG  600

seq1  TTACAGACTTTGGCAGTACTTTTAAGTGTTCAGTT  634
      |||||||||||||||||||||||||||||||||||
seq2  TTACAGACTTTGGCAGTACTTTTAAGTGTTCAGTT  635

seq1: chr17_30373576_30374649
seq2: B6Ng01-235C08.g_66_1142 (reverse)

seq1  CCAGCTCATCCTACCAACAACGCTGAAGGCTTCTAA-TGCCTGTGGCAGT  49
      |||||||   |||||| ||||||||||||||||||| ||||||| |||||
seq2  CCAGCTCCATCTACCACCAACGCTGAAGGCTTCTAATTGCCTGTTGCAGT  50

seq1  TGC-AGGAAGGCAGT-GTCCAGGGACATTGGTGGAGTGTCTG-AATGAGC  96
      ||| || |||||||| || ||||||||||||||||| ||||| |||||||
seq2  TGCAAGAAAGGCAGTGGTTCAGGGACATTGGTGGAG-GTCTGAAATGAGC  99

seq1  ATGCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCA-GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  148

seq1  TCTGTTTTCACTCTGTACACTTCACTGAGCTCCCCACTCTCACTCTGCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCACTCTGTACACTTCACTGAGCTCCCCACTCTCACTCTGCCA  198

seq1  TGGAGCACCCATTGATTCCCCTAC-GGGGATGTGCTAACAGATGATTAGC  245
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGAGCACCCATTGATTCCCCTACGGGGGATGTGCTAACAGATGATTAGC  248

seq1  ATTCCAAAGCTTGGCTTACATCCTGCTAGCCCGTCATATTTAATTACATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAAGCTTGGCTTACATCCTGCTAGCCCGTCATATTTAATTACATT  298

seq1  TTAACTATATTCGTCTTCGATAATAGCACGAACATAATTTAGATAATTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATATTCGTCTTCGATAATAGCACGAACATAATTTAGATAATTAT  348

seq1  CTCTCTCTCTCTTATTCTCTGACTCTGTCTCACTTAGAGCTCTCTGCTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTTATTCTCTGACTCTGTCTCACTTAGAGCTCTCTGCTAC  398

seq1  AGAAATCACTTTCTGGGCTCAAACACACAAACAGACTCGGGCCAAGGGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTTTCTGGGCTCAAACACACAAACAGACTCGGGCCAAGGGCT  448

seq1  CTCCTCTCTGCAGCCACAGCCAAGTGAGTGTGCAGTGAGCTGAAGGGTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTGCAGCCACAGCCAAGTGAGTGTGCAGTGAGCTGAAGGGTCT  498

seq1  CGCAGTGGGGAGCAAAGTCCTGTTTCTGTCTGCACACTCGTGCCTGTGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTGGGGAGCAAAGTCCTGTTTCTGTCTGCACACTCGTGCCTGTGCA  548

seq1  AGACTGGTAAGTGTGCATGTGTGGACGTATGTGTGCACATGCCTAGGCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTAAGTGTGCATGTGTGGACGTATGTGTGCACATGCCTAGGCAG  598

seq1  AAGCTTCTATGTGACACACACACACAGATGGGGTGTCTGCACAGCACCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTATGTGACACACACACACAGATGGGGTGTCTGCACAGCACCTT  648

seq1  CTTGGTCTGGTATTTCTTTCTTACATCTTTCAGTTCTGCTGAAACAGTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTGGTATTTCTTTCTTACATCTTTCAGTTCTGCTGAAACAGTCC  698

seq1  TAAGTGTCTGGGAAGACTTGTGAAGAGAGGCATTGTTCTGAACAGGGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTGGGAAGACTTGTGAAGAGAGGCATTGTTCTGAACAGGGTTT  748

seq1  CTGTCACACGTTGGTCACATGACAATCGCTCTGTGTCCTTGCCAGTGACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACGTTGGTCACATGACAATCGCTCTGTGTCCTTGCCAGTGACC  798

seq1  ACCAGGTAAGAGGCAGAGACCAGGGATTCTCCCGTGGCCCTTGTGCCGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAAGAGGCAGAGACCAGGGATTCTCCCGTGGCCCTTGTGCCGTC  848

seq1  CACACAGCAGTGCACACGTAAGTCCCAGGGCTCCATCACATCACAAGACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAGTGCACACGTAAGTCCCAGGGCTCCATCACATCACAAGACA  898

seq1  TCCAAGTTCCCTCTAAGCCCGGCCTTTCTTTCACTCCCAGACCCAGGAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTCCCTCTAAGCCCGGCCTTTCTTTCACTCCCAGACCCAGGAGC  948

seq1  TGAGAAGGAGATCGCAGGAGCCTCGGTCCTCAGCCTTCTAGAAAAACTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAGATCGCAGGAGCCTCGGTCCTCAGCCTTCTAGAAAAACTAA  998

seq1  GTCACAGCGAAGTTCTCTCAGGTTCTTAAGTTGTAAAGTTCAGCTAAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCGAAGTTCTCTCAGGTTCTTAAGTTGTAAAGTTCAGCTAAGAC  1048

seq1  GACTCTGAGCACACGAGGGAAAAGAATTC  1074
      |||||||||||||||||||||||||||||
seq2  GACTCTGAGCACACGAGGGAAAAGAATTC  1077