BAC Information

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BAC

Clone NameB6Ng01-238H10
Chromosome17 (Build37)
Map Location 9,255,975 - 9,376,784
singlet/doubletdoublet
Overlap geneEG667165
Upstream geneLOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik
Downstream geneEG667170, LOC666143, 4932702K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238H10.bB6Ng01-238H10.g
ACCGA049151GA049152
length1,0821,176
definitionB6Ng01-238H10.b B6Ng01-238H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,255,975 - 9,257,056)(9,375,614 - 9,376,784)
sequence
gaattcccataccatcactgatccacgctgcccctgacacatggcaatcc
atactccattatctgtccctaaaacttggtttgacctttaggtccagctg
cttcttatacaatttctgaaatttatctacattgtcactgaacagaatgg
ttaattttactgctgtcatacagataactttacttttgtttctctattta
ccagctgatggattcttgttacttagtcaccatttgtttctattgtgaag
gagcctttgtgctttgtgctttatcttgggtggatgtgaggagctgcact
gaatgcacagttagctttgctagaaacttccaaacgatgttctcaggcct
ggtcctactctctatccccactatcaggtcttggcagctcagttactcca
ctactgtctagtctgatgaagacttattctttttgaccttcgtgggacat
gagaaaaagggtttgtctctgcagctctggttcgtgtttatagaaatact
gatttcttgggatatttcaagattggatttcaatttgcagtggcatgtcc
agtgttttctgtcttcttattagaagttgtaagagagctttacatatttt
aaacacaaatttttattgcatatgcgttttaaaatatctgcttcaagaat
caagatccccctttaattgtaagagcttttaaaagagtgtagtagacttc
tgatgctgtggggtggaccacattcctttctccaccctctgtctcgttct
gatgctctttagtgtcaccttctaattatatcaaataggaaaaccttgtc
tctcacactctgttatggtccccactccctacccattcctgattttcaat
ttgcctcttattctgagttcccagtcactacttcatcatgtggatcaact
gtatggttttggcaaggcaatgggtgatggtcggggacttttattcaaga
aggcacggcctgtgatcagagaaaagcagtgagtagacttgatgggattg
ccttgaaagcagagcaaaagctgaggcccgatgaacgtcccgtccctaag
aagttgggagatagaatagatacgtatgagtt
gaattcctagagattacatactcaccagagcaggaataaggactcaagaa
gatatgattctgaagagtgcccctttataacaaggaatctatatgtagtt
gaggagggactttttttgtgaccccatcatgaagctggaaactagatact
agaagaacgcattacaacagaggaaactacagtctcctaagtttccctcg
ggaacacaaatgcaaaaattctttagaaaacttatgaaatttatcaaatg
gctccagctctaaccacatataaaagcagagaacattagaaatgaataca
cacgtggtttgctattcagaaatctcttagtattattcaatgattcaaca
cacaaaacagagttaggggagaagacgtttacagtccaactttcattgct
cagctgcatgcctgacagtggtcaataagtcacaagagtaaataagttac
tgtaaatctgatgcatagctttgcatcagatgactttcccagctgtagta
taaagtaagtattctaagaacacttaaggcagtctatgctaacgtgagtt
ccggtatgctaacatgtgagttccagtagactgggtacactaaaaacact
taaggcagtctatgctaacgtgagttccggttcggtgggtacactaaatg
tattttcagcttacggcattttcaactttattagaaaccatcagactcga
cctcaaggagggagcatcaagtttggatgaacacccagcatactgccttg
ataattactcagcaaaaggtgtgaaaagagctgcttcttcaaaatccttc
aagatgatggtgtctgtgagacactcaataggaaatagaacttgctgaag
atgggtgtcttgtgaggtggctcagaactagaactttgctgctcaagcct
ggcaacctgaaacccagggtagaatcaacttctaaaagttgtcctctgac
ctcctcacctgtgctttggcacacgcacaccccccacattcattattctc
ttccctccctctcccccctctcccgttctcatttaaacaaagagcagggt
gatcacatgaaatcctatgatcaactaagctggcccacagggttcacaga
gaaactgactctggacatctaggtaaagctggtagctagcttggtcttct
gcgggaacctcctaaacagtgagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9255975_9257056
seq2: B6Ng01-238H10.b_50_1131

seq1  GAATTCCCATACCATCACTGATCCACGCTGCCCCTGACACATGGCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATACCATCACTGATCCACGCTGCCCCTGACACATGGCAATCC  50

seq1  ATACTCCATTATCTGTCCCTAAAACTTGGTTTGACCTTTAGGTCCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCATTATCTGTCCCTAAAACTTGGTTTGACCTTTAGGTCCAGCTG  100

seq1  CTTCTTATACAATTTCTGAAATTTATCTACATTGTCACTGAACAGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATACAATTTCTGAAATTTATCTACATTGTCACTGAACAGAATGG  150

seq1  TTAATTTTACTGCTGTCATACAGATAACTTTACTTTTGTTTCTCTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTACTGCTGTCATACAGATAACTTTACTTTTGTTTCTCTATTTA  200

seq1  CCAGCTGATGGATTCTTGTTACTTAGTCACCATTTGTTTCTATTGTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGATGGATTCTTGTTACTTAGTCACCATTTGTTTCTATTGTGAAG  250

seq1  GAGCCTTTGTGCTTTGTGCTTTATCTTGGGTGGATGTGAGGAGCTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGTGCTTTGTGCTTTATCTTGGGTGGATGTGAGGAGCTGCACT  300

seq1  GAATGCACAGTTAGCTTTGCTAGAAACTTCCAAACGATGTTCTCAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAGTTAGCTTTGCTAGAAACTTCCAAACGATGTTCTCAGGCCT  350

seq1  GGTCCTACTCTCTATCCCCACTATCAGGTCTTGGCAGCTCAGTTACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTACTCTCTATCCCCACTATCAGGTCTTGGCAGCTCAGTTACTCCA  400

seq1  CTACTGTCTAGTCTGATGAAGACTTATTCTTTTTGACCTTCGTGGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCTAGTCTGATGAAGACTTATTCTTTTTGACCTTCGTGGGACAT  450

seq1  GAGAAAAAGGGTTTGTCTCTGCAGCTCTGGTTCGTGTTTATAGAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGGGTTTGTCTCTGCAGCTCTGGTTCGTGTTTATAGAAATACT  500

seq1  GATTTCTTGGGATATTTCAAGATTGGATTTCAATTTGCAGTGGCATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTGGGATATTTCAAGATTGGATTTCAATTTGCAGTGGCATGTCC  550

seq1  AGTGTTTTCTGTCTTCTTATTAGAAGTTGTAAGAGAGCTTTACATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTGTCTTCTTATTAGAAGTTGTAAGAGAGCTTTACATATTTT  600

seq1  AAACACAAATTTTTATTGCATATGCGTTTTAAAATATCTGCTTCAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATTTTTATTGCATATGCGTTTTAAAATATCTGCTTCAAGAAT  650

seq1  CAAGATCCCCCTTTAATTGTAAGAGCTTTTAAAAGAGTGTAGTAGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCCCTTTAATTGTAAGAGCTTTTAAAAGAGTGTAGTAGACTTC  700

seq1  TGATGCTGTGGGGTGGACCACATTCC-TTCTCCACCCTCTGTCTCGTTCT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGATGCTGTGGGGTGGACCACATTCCTTTCTCCACCCTCTGTCTCGTTCT  750

seq1  GATGCTCTTTAGTGTCACCTTCTAATTATATCAAATAGGAAAACCTTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTTAGTGTCACCTTCTAATTATATCAAATAGGAAAACCTTGTC  800

seq1  TCTCACACTCTGTTATGGTCCCCACT-CCTACCCATTCCTGATTTTCAAT  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTCACACTCTGTTATGGTCCCCACTCCCTACCCATTCCTGATTTTCAAT  850

seq1  TTGCCTCTTATTCTGAGTTCCCAGTCACTACTTCATCAATGTGGATCAAC  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGCCTCTTATTCTGAGTTCCCAGTCACTACTTCATC-ATGTGGATCAAC  899

seq1  TGTATGGTTTTGGCAAGGC-ATTGGTGATGGTCGGGGACTTTTA-TCAAG  946
      ||||||||||||||||||| || ||||||||||||||||||||| |||||
seq2  TGTATGGTTTTGGCAAGGCAATGGGTGATGGTCGGGGACTTTTATTCAAG  949

seq1  AAGGCAGGGCCTGTGATCAGAGAAAAGGCAGTGAGTAGACTTGATGGGAT  996
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGCACGGCCTGTGATCAGAGAAAA-GCAGTGAGTAGACTTGATGGGAT  998

seq1  GGCTTGAAAAGCAGAGCAGAAGCTGAGGCCCGATGAACGTCCCGTCCCTA  1046
       || |  ||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCCTTGAAAGCAGAGCAAAAGCTGAGGCCCGATGAACGTCCCGTCCCTA  1048

seq1  AGGAGTTGGGAGGAATAGAGATAGATACGTA-GAGTT  1082
      || |||||||||  ||||| ||||||||||| |||||
seq2  AGAAGTTGGGAG--ATAGA-ATAGATACGTATGAGTT  1082

seq1: chr17_9375614_9376784
seq2: B6Ng01-238H10.g_67_1242 (reverse)

seq1  TCTCTCACTG-TTAGGAG--TCCCACAAGAAGACCAAGCTAGCTATACAA  47
      |||||||||| |||||||  |||| | ||||||||||||||||||  || 
seq2  TCTCTCACTGTTTAGGAGGTTCCCGC-AGAAGACCAAGCTAGCTA-CCAG  48

seq1  CTCTAACATGA-GTGCAGAGGGTTTCAG--TCTCTGTGAACCCCTGTGGG  94
      || || |  || || |||||    ||||  |||||||||| |||||||||
seq2  CTTTACCTAGATGTCCAGAG----TCAGTTTCTCTGTGAA-CCCTGTGGG  93

seq1  CCCAGCTTAGTTGATTCTATGGGTTTTCATGTGGTTCACCTGGCTCTTTG  144
       ||||||||||||||   || || |||||||| | |||||  ||||||||
seq2  -CCAGCTTAGTTGAT--CATAGGATTTCATGT-GATCACCCTGCTCTTTG  139

seq1  TTAAAATGAG-ACGGGGGGGGGGGGAGAGGGAGGG-AGAG-ATAATGGAT  191
      || ||||||| ||||| | |||||||||||||||| |||| |||||| ||
seq2  TTTAAATGAGAACGGGAGAGGGGGGAGAGGGAGGGAAGAGAATAATGAAT  189

seq1  GT-GGGGGTGTGCGTGTGCCAAAGCACAGGTGAGGAGGTCAGAGGACAAC  240
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGTGTGCGTGTGCCAAAGCACAGGTGAGGAGGTCAGAGGACAAC  239

seq1  TTTTAGAAGTTGATTCTACCCTGGGTTTCAGGTTGCCAGGCTTGAGCAGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGTTGATTCTACCCTGGGTTTCAGGTTGCCAGGCTTGAGCAGC  289

seq1  -AAGTTCTAGTTCTGAGCCACCTCAC-AGACACCCATCTTCAGCAAGTTC  338
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTTCTAGTTCTGAGCCACCTCACAAGACACCCATCTTCAGCAAGTTC  339

seq1  TATTTCCTATTGAGTGTCTCACAGACACCATCATCTTG-AGGATTTTGAA  387
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTTCCTATTGAGTGTCTCACAGACACCATCATCTTGAAGGATTTTGAA  389

seq1  G-AGCAGCTCTTTTCACACC-TTTGCTGAGTAATTATCAAGGCAGTATGC  435
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGCAGCTCTTTTCACACCTTTTGCTGAGTAATTATCAAGGCAGTATGC  439

seq1  TGGGTGTTCATCC-AACTTGATGCTCCCTCCTTGAGGTCGAGTCTGATGG  484
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTCATCCAAACTTGATGCTCCCTCCTTGAGGTCGAGTCTGATGG  489

seq1  TTTCTAATAAAGTTGAAAATGCCGTAAGCTGAAAATACATTTAGTGTACC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAAAGTTGAAAATGCCGTAAGCTGAAAATACATTTAGTGTACC  539

seq1  CACCGAACCGGAACTCACGTTAGCATAGACTGCCTTAAGTGTTTTTAGTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAACCGGAACTCACGTTAGCATAGACTGCCTTAAGTGTTTTTAGTG  589

seq1  TACCCAGTCTACTGGAACTCACATGTTAGCATACCGGAACTCACGTTAGC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTCTACTGGAACTCACATGTTAGCATACCGGAACTCACGTTAGC  639

seq1  ATAGACTGCCTTAAGTGTTCTTAGAATACTTACTTTATACTACAGCTGGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGCCTTAAGTGTTCTTAGAATACTTACTTTATACTACAGCTGGG  689

seq1  AAAGTCATCTGATGCAAAGCTATGCATCAGATTTACAGTAACTTATTTAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCTGATGCAAAGCTATGCATCAGATTTACAGTAACTTATTTAC  739

seq1  TCTTGTGACTTATTGACCACTGTCAGGCATGCAGCTGAGCAATGAAAGTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGACTTATTGACCACTGTCAGGCATGCAGCTGAGCAATGAAAGTT  789

seq1  GGACTGTAAACGTCTTCTCCCCTAACTCTGTTTTGTGTGTTGAATCATTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAAACGTCTTCTCCCCTAACTCTGTTTTGTGTGTTGAATCATTG  839

seq1  AATAATACTAAGAGATTTCTGAATAGCAAACCACGTGTGTATTCATTTCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTAAGAGATTTCTGAATAGCAAACCACGTGTGTATTCATTTCT  889

seq1  AATGTTCTCTGCTTTTATATGTGGTTAGAGCTGGAGCCATTTGATAAATT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTCTGCTTTTATATGTGGTTAGAGCTGGAGCCATTTGATAAATT  939

seq1  TCATAAGTTTTCTAAAGAATTTTTGCATTTGTGTTCCCGAGGGAAACTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTTTTCTAAAGAATTTTTGCATTTGTGTTCCCGAGGGAAACTTA  989

seq1  GGAGACTGTAGTTTCCTCTGTTGTAATGCGTTCTTCTAGTATCTAGTTTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTAGTTTCCTCTGTTGTAATGCGTTCTTCTAGTATCTAGTTTC  1039

seq1  CAGCTTCATGATGGGGTCACAAAAAAAGTCCCTCCTCAACTACATATAGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCATGATGGGGTCACAAAAAAAGTCCCTCCTCAACTACATATAGA  1089

seq1  TTCCTTGTTATAAAGGGGCACTCTTCAGAATCATATCTTCTTGAGTCCTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTATAAAGGGGCACTCTTCAGAATCATATCTTCTTGAGTCCTT  1139

seq1  ATTCCTGCTCTGGTGAGTATGTAATCTCTAGGAATTC  1171
      |||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCTCTGGTGAGTATGTAATCTCTAGGAATTC  1176