BAC Information

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BAC

Clone NameB6Ng01-239P21
Chromosome17 (Build37)
Map Location 48,506,288 - 48,506,663
singlet/doubletsinglet
Overlap geneTreml1
Upstream geneMrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2
Downstream geneNfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239P21.bB6Ng01-239P21.g
ACCGA050273GA050274
length376886
definitionB6Ng01-239P21.b B6Ng01-239P21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tctgcagcccggccaactagctctgccttttatgcccagagtatgtcagc
gcctggtgactcagggctccaatctggtatcttggtttggtgcagtcagg
gagtggtgctccgatatgattggggtgtttggggaaagaattcttttctg
ctgcttcccggtgctgggtctaccgtcattacatattggctaaataaacc
tagaggatatataagctcttcctgcatgtgtgagtacatgtgtgtgtatg
taagtgcacatgtgtgtgcatgcatgtgtgagtataagtgtgtatgcata
tgtgtgtgtgtgcatgtgtatgtaagtgcgttcgagtgggtaagtgtgta
tgtatgtgtgtgtgtgcaggtgtgtg
gaattctttgtttagctttgtaccccatttttaatagggttgagtttctg
gagtccagcttcttgagttctttgtaaatatattgggtattagtcccctg
tcagatttaggattggtaaaaatcctttcccaatctgttggtggccttat
cgtcttattgacagtgtcttttgccttacagaagctttgaaattttatga
ggtcccatttgtcgattctcgatcttatagcacaagccattgctgttctg
ttaggctatcagagtaattatggctttatagaatgaactgggtagagtac
cttctgtttctattttgtggaatagtttgaggagaattgaaattaggtct
tctttgaaggtctgatagaactctgcactaaacccatctggtcctgggct
ttttttttttttttttcattttttttctttttttttttttttttggttgg
gagactattaacgactgcctctatttctttaggggatatgggactgttta
gatcattaatctgatcctgaattaactttggtacctggtatctgtctaga
aaattgtccatttcatccaggttttccagttttgttgagtatagcccttt
gtagtaggatctggtgatgttttggatttcctcaggttctgttgttatgt
ctcccttttcatttctgattttgttaattaggatactgtcccctctagtt
agtctgtctaacggtttatctatcttgttgattttatcaaaaaaacagct
ccctggtttgattgattctttgtatagttcttttgtttctacttggttgg
gttcagccctgccttctactatcaagattttacctttgatgagtataaag
tgcccctccttgtcttttttgatgactttgggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_48506288_48506663
seq2: B6Ng01-239P21.b_52_427

seq1  TCTGCAGCCCGGCCAACTAGCTCTGCCTTTTATGCCCAGAGTATGTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCCGGCCAACTAGCTCTGCCTTTTATGCCCAGAGTATGTCAGC  50

seq1  GCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGG  100

seq1  GAGTGGTGCTCCGATATGATTGGGGTGTTTGGGGAAAGAATTCTTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGCTCCGATATGATTGGGGTGTTTGGGGAAAGAATTCTTTTCTG  150

seq1  CTGCTTCCCGGTGCTGGGTCTACCGTCATTACATATTGGCTAAATAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCGGTGCTGGGTCTACCGTCATTACATATTGGCTAAATAAACC  200

seq1  TAGAGGATATATAAGCTCTTCCTGCATGTGTGAGTACATGTGTGTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATATATAAGCTCTTCCTGCATGTGTGAGTACATGTGTGTGTATG  250

seq1  TAAGTGCACATGTGTGTGCATGCATGTGTGAGTATAAGTGTGTATGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACATGTGTGTGCATGCATGTGTGAGTATAAGTGTGTATGCATA  300

seq1  TGTGTGTGTGTGCATGTGTATGTAAGTGCGTTCGAGTGGGTAAGTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCATGTGTATGTAAGTGCGTTCGAGTGGGTAAGTGTGTA  350

seq1  TGTATGTGTGTGTGTGCAGGTGTGTG  376
      ||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGCAGGTGTGTG  376