BAC Information

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BAC

Clone NameB6Ng01-240A14
Chromosome17 (Build37)
Map Location 61,717,123 - 61,859,338
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433129, EG620725
Downstream geneLOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240A14.bB6Ng01-240A14.g
ACCGA050307GA050308
length1,2071,129
definitionB6Ng01-240A14.b B6Ng01-240A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,717,123 - 61,718,342)(61,858,214 - 61,859,338)
sequence
gaattctctgtgatgttacatacaataagactagacacaatctcttatat
caaaaatagatgaggcaatcaagtagaaggaaaagggtcccaaaaacaga
caaaaacagtcacagacaacctacatacacactggttagaagtcccacaa
aaaacaccaagctaacaaccatagcatatattcagagtaccaagcatacc
catgtaggatacatgattgctccttcactctctatgaagccctatgaatc
ctacttagataaagtctgttgttctctggatcctacatttcttcctctct
ctggtctacaagtttccccaaccatatggggaaggactcactggagatct
ctaatttggctttctcagtgcctaacgtttggctgtaggtctctgtatct
gctcctatagctgactttcgtagtcactttgatggtggttggtctaggca
cagatatatgagtataaaaggatattattagggatcttttttcccatagt
tctctgagctgtccagtctcttacactcttatacaggcagtgctggactc
tctcttatagtatgagcctcaaattagacctgtcattgcttgggacaagt
tctctgaaaatatattaaagcaaataacacaaacaaaattagttaaaaat
gtaagcatgtcaagaaattcttgtatattattagtgaattcttcaaaaag
aggattaacatcaccaaggctttcaagtatgtatttctatataataaaaa
atgtttaataactataaaaaatttatgcacaaaatttgaagaatacctac
tcagaggagacatattaactgtaacatattagctgtccatcaactaccct
tatgtgtatgtatatgtgtgcataagtgagcttaaaatttataaatacaa
ttgcagaaatcacatgaaatttgaaattttgagcaatacatatttttatc
tcgactctttgtttaagagtacatcatgtatgtaatatattttgatcaaa
tgtgtcatcatttcttcccctcaatatgtctcccatgtccacactaaatt
tctattcaacattatggattcttagattttttaggatccacaaggcacag
ttagtgcacatgcatattctatgggtgtaggaaatctatgtgagcatgac
acctcttcagaactgacctttctcacagcacctatcaaagttcaatagct
ctctgct

gaattcttgtttagttttatgttgtgcaaaataagagacaagctgtaatt
ttataattttgaaaaccattatatttacacaaaactatgcaaaacaaata
atattgatgaagtgtaaatgagattaataaaatttattacatccaagtct
ttctcgtttctacaaaatatttaagttgtggcgattacaaacatcaacgg
tagaagataattattaaacatgaggaagtacaatggagtcacatatagtc
ctgtgtacctgtcaaaattaaatattggtggacgggtcatcagaaagcca
gaaaatgatgtttaaacatctctagaattgaatgtaagtgaaaactcacc
atggaattagagaaaagtaactgcagagtagatgactcaggatttttcct
attgtgaatgtggacttgaaaagaatagaccacaatcataagtagctaac
atttgaaaggagaaaaagaattctgcaatggttttgaaaataatcagaaa
aaaagatactatggaggcagagcttagaaacagaatttccttacacactt
agagaattagacacatatatcagattagggattgtttactatgtggagtt
tacaaatactccttttgggttatatatgaattaaaaaatgatttatattt
catcattactagtatatatattccagagaaatcttgatataatactttta
tctcattgcagcataagtatgagttctaaatagactgtaaaagtgtttca
caacataaattacagatagaagtcttatttatactcaattttaaatttct
ttctttctttcttttttcttttcttttctttttctttttctttttttttt
tttttttctttttttgacagtgtttctctgtgtagtcctgggctcttctg
ggaactcactctgttgaccaggctgacctcgaactcagaaatttgcctgc
ctctgcctcacagtgctggataagtcatgtgccacccactgccagaccac
tcatttttaatttctaagcccattcttttcacatgtgttcatcagaatat
catgatatgattttctattattgagaaattattgaagagtatttaagaaa
agccttatcctctcttaataatgaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61717123_61718342
seq2: B6Ng01-240A14.b_44_1250

seq1  GAATTCTCTGTGATGTTACATACAATAAGACTAGACACAATCTCTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGATGTTACATACAATAAGACTAGACACAATCTCTTATAT  50

seq1  CAAAAATAGATGAGGCAATCAAGTAGAAGGAAAAGGGTCCCAAAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGATGAGGCAATCAAGTAGAAGGAAAAGGGTCCCAAAAACAGA  100

seq1  CAAAAACAGTCACAGACAACCTACATACACACTGGTTAGAAGTCCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGTCACAGACAACCTACATACACACTGGTTAGAAGTCCCACAA  150

seq1  AAAACACCAAGCTAACAACCATAGCATATATTCAGAGTACCAAGCATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAAGCTAACAACCATAGCATATATTCAGAGTACCAAGCATACC  200

seq1  CATGTAGGATACATGATTGCTCCTTCACTCTCTATGAAGCCCTATGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGATACATGATTGCTCCTTCACTCTCTATGAAGCCCTATGAATC  250

seq1  CTACTTAGATAAAGTCTGTTGTTCTCTGGATCCTACATTTCTTCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGATAAAGTCTGTTGTTCTCTGGATCCTACATTTCTTCCTCTCT  300

seq1  CTGGTCTACAAGTTTCCCCAACCATATGGGGAAGGACTCACTGGAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAGTTTCCCCAACCATATGGGGAAGGACTCACTGGAGATCT  350

seq1  CTAATTTGGCTTTCTCAGTGCCTAACGTTTGGCTGTAGGTCTCTGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGGCTTTCTCAGTGCCTAACGTTTGGCTGTAGGTCTCTGTATCT  400

seq1  GCTCCTATAGCTGACTTTCGTAGTCACTTTGATGGTGGTTGGTCTAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATAGCTGACTTTCGTAGTCACTTTGATGGTGGTTGGTCTAGGCA  450

seq1  CAGATATATGAGTATAAAAGGATATTATTAGGGATCTTTTTTCCCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATGAGTATAAAAGGATATTATTAGGGATCTTTTTTCCCATAGT  500

seq1  TCTCTGAGCTGTCCAGTCTCTTACACTCTTATACAGGCAGTGCTGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGCTGTCCAGTCTCTTACACTCTTATACAGGCAGTGCTGGACTC  550

seq1  TCTCTTATAGTATGAGCCTCAAATTAGACCTGTCATTGCTTGGGACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATAGTATGAGCCTCAAATTAGACCTGTCATTGCTTGGGACAAGT  600

seq1  TCTCTGAAAATATATTAAAGCAAATAACACAAACAAAATTAGTTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAAATATATTAAAGCAAATAACACAAACAAAATTAGTTAAAAAT  650

seq1  GTAAGCATGTCAAGAAATTCTTGTATATTATTAGTGAATTCTTCAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATGTCAAGAAATTCTTGTATATTATTAGTGAATTCTTCAAAAAG  700

seq1  AGGATTAACATCACCAAGGCTTTCAAGTATGTATTTCTATATAATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAACATCACCAAGGCTTTCAAGTATGTATTTCTATATAATAAAAA  750

seq1  ATGTTTAATAACTATAAAAAATTTATGCACAAAATTTGAAGAATACCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATAACTATAAAAAATTTATGCACAAAATTTGAAGAATACCTAC  800

seq1  TCAGAGGAGACATATTAACTGTAACATATTAGCTGTCCATCAACTACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGACATATTAACTGTAACATATTAGCTGTCCATCAACTACCCT  850

seq1  TATGTGTATGTATATGTGTGCATAAGTGAGCTTAAAATTTATAAATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGTATATGTGTGCATAAGTGAGCTTAAAATTTATAAATACAA  900

seq1  TTGCAGAAATCACATGAAATTTGAAATTTTGAGCAATACATATTTTTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAATCACATGAAATTTGAAATTTTGAGCAATACATATTTTTATC  950

seq1  TCGACTCTTTGTTTAAGGAGTACATCATGTATGTAATATATTTTGATCAA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCGACTCTTTGTTTAA-GAGTACATCATGTATGTAATATATTTTGATCAA  999

seq1  ATGTGTCATCATTTCTTCCCCTCAAATATGTCTCCCATGTCCACCACTAA  1050
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATGTGTCATCATTTCTTCCCCTC-AATATGTCTCCCATGTCCA-CACTAA  1047

seq1  ATTTCCTATTCAACATTATGGAATTCTTTAGAATTTTTTTAGATCCACAA  1100
      |||| |||||||||||||||| |||| |||| |||||||  |||||||||
seq2  ATTT-CTATTCAACATTATGG-ATTC-TTAG-ATTTTTTAGGATCCACAA  1093

seq1  GGCACAGTTAGTGCACCATGCATA-TCTATGGGTGTAGGGAAATCTATGT  1149
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  GGCACAGTTAGTGCA-CATGCATATTCTATGGGTGTA-GGAAATCTATGT  1141

seq1  GAGCATGGACAACCTC-TCAGAACTGACTCTTCTTCCACCAGCAACTATC  1198
      |||||| ||| ||||| |||||||||||  ||||  || ||||| |||||
seq2  GAGCAT-GAC-ACCTCTTCAGAACTGACCTTTCT--CA-CAGCACCTATC  1186

seq1  AAATGTCAATAGCTCTTCTGCT  1220
      |||  |||||||||| ||||||
seq2  AAAGTTCAATAGCTC-TCTGCT  1207


seq1: chr17_61858214_61859338
seq2: B6Ng01-240A14.g_66_1194 (reverse)

seq1  TACATTCAATTATTAAGA---GATAGGGCTTTTCTAAAATACTCTTC-AT  46
      ||||||| ||||||||||   |||| ||||||||| ||||||||||| ||
seq2  TACATTC-ATTATTAAGAGAGGATAAGGCTTTTCTTAAATACTCTTCAAT  49

seq1  AATTTCTCAATATTAGAAAATCATATCATGATATTCTGATGAACACATGT  96
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAATAATAGAAAATCATATCATGATATTCTGATGAACACATGT  99

seq1  GAAAAGAAT-GGCTTAGAAATTAAAAATTGAGTGGTCTGGCAGT-GGTGG  144
      ||||||||| ||||||||||||||||| |||||||||||||||| |||||
seq2  GAAAAGAATGGGCTTAGAAATTAAAAA-TGAGTGGTCTGGCAGTGGGTGG  148

seq1  CACATGACTTTAATCCCAGCACTTGTGAGGCAGAGGCAGGCAAATTTCTG  194
      ||||||||||  || ||||||| |||||||||||||||||||||||||||
seq2  CACATGACTT--AT-CCAGCAC-TGTGAGGCAGAGGCAGGCAAATTTCTG  194

seq1  AGTTCGAGGTCAGCCTGGTCAACAGAGTGAGTT-CCAGAAGAG-CCAGGA  242
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AGTTCGAGGTCAGCCTGGTCAACAGAGTGAGTTCCCAGAAGAGCCCAGGA  244

seq1  CTACACAGAGAAACACTGTCAAAAAAAG--AAAAAAAAAAAAAAAGAAAA  290
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTACACAGAGAAACACTGTCAAAAAAAGAAAAAAAAAAAAAAAAAGAAAA  294

seq1  AGAAAAAGAAAAGAAAAGAAAAAAGAAAGAAAGAAAGAAATTTAAAATTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAGAAAAGAAAAAAGAAAGAAAGAAAGAAATTTAAAATTG  344

seq1  AGTATAAATAAGACTTCTATCTGTAATTTATGTTGTGAAACACTTTTACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATAAGACTTCTATCTGTAATTTATGTTGTGAAACACTTTTACA  394

seq1  GTCTATTTAGAACTCATACTTATGCTGCAATGAGATAAAAGTATTATATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTAGAACTCATACTTATGCTGCAATGAGATAAAAGTATTATATC  444

seq1  AAGATTTCTCTGGAATATATATACTAGTAATGATGAAATATAAATCATTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTCTGGAATATATATACTAGTAATGATGAAATATAAATCATTT  494

seq1  TTTAATTCATATATAACCCAAAAGGAGTATTTGTAAACTCCACATAGTAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCATATATAACCCAAAAGGAGTATTTGTAAACTCCACATAGTAA  544

seq1  ACAATCCCTAATCTGATATATGTGTCTAATTCTCTAAGTGTGTAAGGAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCCTAATCTGATATATGTGTCTAATTCTCTAAGTGTGTAAGGAAA  594

seq1  TTCTGTTTCTAAGCTCTGCCTCCATAGTATCTTTTTTTCTGATTATTTTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTAAGCTCTGCCTCCATAGTATCTTTTTTTCTGATTATTTTC  644

seq1  AAAACCATTGCAGAATTCTTTTTCTCCTTTCAAATGTTAGCTACTTATGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGCAGAATTCTTTTTCTCCTTTCAAATGTTAGCTACTTATGA  694

seq1  TTGTGGTCTATTCTTTTCAAGTCCACATTCACAATAGGAAAAATCCTGAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCTATTCTTTTCAAGTCCACATTCACAATAGGAAAAATCCTGAG  744

seq1  TCATCTACTCTGCAGTTACTTTTCTCTAATTCCATGGTGAGTTTTCACTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACTCTGCAGTTACTTTTCTCTAATTCCATGGTGAGTTTTCACTT  794

seq1  ACATTCAATTCTAGAGATGTTTAAACATCATTTTCTGGCTTTCTGATGAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATTCTAGAGATGTTTAAACATCATTTTCTGGCTTTCTGATGAC  844

seq1  CCGTCCACCAATATTTAATTTTGACAGGTACACAGGACTATATGTGACTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCACCAATATTTAATTTTGACAGGTACACAGGACTATATGTGACTC  894

seq1  CATTGTACTTCCTCATGTTTAATAATTATCTTCTACCGTTGATGTTTGTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTTCCTCATGTTTAATAATTATCTTCTACCGTTGATGTTTGTA  944

seq1  ATCGCCACAACTTAAATATTTTGTAGAAACGAGAAAGACTTGGATGTAAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCACAACTTAAATATTTTGTAGAAACGAGAAAGACTTGGATGTAAT  994

seq1  AAATTTTATTAATCTCATTTACACTTCATCAATATTATTTGTTTTGCATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATTAATCTCATTTACACTTCATCAATATTATTTGTTTTGCATA  1044

seq1  GTTTTGTGTAAATATAATGGTTTTCAAAATTATAAAATTACAGCTTGTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTAAATATAATGGTTTTCAAAATTATAAAATTACAGCTTGTCT  1094

seq1  CTTATTTTGCACAACATAAAACTAAACAAGAATTC  1125
      |||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGCACAACATAAAACTAAACAAGAATTC  1129


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