BAC Information

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BAC

Clone NameB6Ng01-240N06
Chromosome17 (Build37)
Map Location 83,497,781 - 83,646,014
singlet/doubletdoublet
Overlap geneLOC100043900, AW548124
Upstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
Downstream geneEG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240N06.bB6Ng01-240N06.g
ACCGA050896GA050897
length1,20964
definitionB6Ng01-240N06.b B6Ng01-240N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,497,781 - 83,498,966)(83,645,951 - 83,646,014)
sequence
gaattccagtgtgatgtttttgatatgttcccaaagatccaggatatttg
gtgagatagaaggttaaaatggggatcttatttgctgaaaaacaccaaag
gaacgatattgcgtcaatcaaggatggaatacagagcacctgagagcagg
tggggtacttctggggagcggaaggaaaggatgcagctgttggcattttg
tacaacgagctgttcctgaatcccattgccctgcctgcagtcaaactgag
tgctaccatgtgggacactagaaacatttgcaacctgctttgcccggtgc
ctaggatcaccgtccagaagcagtgctggcttgactcatagacccagtca
gagaacagctaccacccaaagagaaataccatagcctaggctttccccac
atgcaattctttccagaaaggaactctgccaagaggcaagagctaccgag
aagagggaggggagatggcatattggagccatgtggggaaagttgatttt
ttggcagtgcccacactcaaagacagcagagggatcgtactcagcaaagg
atccccttactcccgtccccagcatctagggagagcacgtttgtctgtct
cttctaagactcatgcaagttcatgaaagtctccctatgagggccgacat
gcagccggtctctacccagccctccccaaaacctttgagcattcctattc
cccacacaccccaaattagcccgagtgtcaatccaaaaggcaaggcaagg
aaatgcaaaccagggagccagcagccctgggctctgagttccctcctccc
tcagagctcaactcaacgcagacttgcctctccctcggttggagcctgag
gcaggcttcattttccccttaggttgtcacagaccaattttctaaactgc
atgaaaaacagaaaacaaacagaaaagtaaatccaccaaaagcctggatc
tcgtgaatcagcttggcaggccagagcaatcgtgctaactattttcatgc
ctggtttaagactttctaactctagcaacaagtatcaacaccagtttgtg
ccctgaatttaaaaaaaaaaaaaggaagatggacatcggcttctctagga
accgaagatttgtaaaaacaggaagtcacttcatcaaggagctaaaacta
tcaagccattcttggccttgggcatggcaatcctctccggctaacatggg
ccaaaccga
acaggaagtccaaggactttggggaggaagagggtgagaagagactctgg
gtgggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83497781_83498966
seq2: B6Ng01-240N06.b_50_1258

seq1  GAATTCCAGTGTGATGTTTTTGATATGTTCCCAAAGATCCAGGATATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTGATGTTTTTGATATGTTCCCAAAGATCCAGGATATTTG  50

seq1  GTGAGATAGAAGGTTAAAATGGGGATCTTATTTGCTGAAAAACACCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATAGAAGGTTAAAATGGGGATCTTATTTGCTGAAAAACACCAAAG  100

seq1  GAACGATATTGCGTCAATCAAGGATGGAATACAGAGCACCTGAGAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATATTGCGTCAATCAAGGATGGAATACAGAGCACCTGAGAGCAGG  150

seq1  TGGGGTACTTCTGGGGAGCGGAAGGAAAGGATGCAGCTGTTGGCATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACTTCTGGGGAGCGGAAGGAAAGGATGCAGCTGTTGGCATTTTG  200

seq1  TACAACGAGCTGTTCCTGAATCCCATTGCCCTGCCTGCAGTCAAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGAGCTGTTCCTGAATCCCATTGCCCTGCCTGCAGTCAAACTGAG  250

seq1  TGCTACCATGTGGGACACTAGAAACATTTGCAACCTGCTTTGCCCGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCATGTGGGACACTAGAAACATTTGCAACCTGCTTTGCCCGGTGC  300

seq1  CTAGGATCACCGTCCAGAAGCAGTGCTGGCTTGACTCATAGACCCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCACCGTCCAGAAGCAGTGCTGGCTTGACTCATAGACCCAGTCA  350

seq1  GAGAACAGCTACCACCCAAAGAGAAATACCATAGCCTAGGCTTTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCTACCACCCAAAGAGAAATACCATAGCCTAGGCTTTCCCCAC  400

seq1  ATGCAATTCTTTCCAGAAAGGAACTCTGCCAAGAGGCAAGAGCTACCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCTTTCCAGAAAGGAACTCTGCCAAGAGGCAAGAGCTACCGAG  450

seq1  AAGAGGGAGGGGAGATGGCATATTGGAGCCATGTGGGGAAAGTTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGGGGAGATGGCATATTGGAGCCATGTGGGGAAAGTTGATTTT  500

seq1  TTGGCAGTGCCCACACTCAAAGACAGCAGAGGGATCGTACTCAGCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGCCCACACTCAAAGACAGCAGAGGGATCGTACTCAGCAAAGG  550

seq1  ATCCCCTTACTCCCGTCCCCAGCATCTAGGGAGAGCACGTTTGTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTACTCCCGTCCCCAGCATCTAGGGAGAGCACGTTTGTCTGTCT  600

seq1  CTTCTAAGACTCATGCAAGTTCATGAAAGTCTCCCTATGAGGGCCGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGACTCATGCAAGTTCATGAAAGTCTCCCTATGAGGGCCGACAT  650

seq1  GCAGCCGGTCTCTACCCAGCCCTCCCCAAAACCTTTGAGCATTCCTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGGTCTCTACCCAGCCCTCCCCAAAACCTTTGAGCATTCCTATTC  700

seq1  CCCACACACCCCAAATTAGCCCGAGTGTCAATCCAAAAGGCAAGGCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCCCAAATTAGCCCGAGTGTCAATCCAAAAGGCAAGGCAAGG  750

seq1  AAATGCAAACCAGGGAGCCAGCAGCCCTGGGCTCTGAGTTCCCTCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAACCAGGGAGCCAGCAGCCCTGGGCTCTGAGTTCCCTCCTCCC  800

seq1  TCAGAGCTCAACTCAACGCAGACTTGCCTCT-CCTCGGTTGGAGCCTGAG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGAGCTCAACTCAACGCAGACTTGCCTCTCCCTCGGTTGGAGCCTGAG  850

seq1  GCAGGC-TCA-TTTCCCCTTAGGTTGTCACAGACCAATTTTCTAAACTGC  897
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTCATTTTCCCCTTAGGTTGTCACAGACCAATTTTCTAAACTGC  900

seq1  ATG-AAAACAGAAAACAAACAGAAAAGTAAATCCACC-AAAGCCTGGATC  945
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGAAAAACAGAAAACAAACAGAAAAGTAAATCCACCAAAAGCCTGGATC  950

seq1  TCGTGAA-CAGCTTGGCAGGCCAGAGCAA-CGTGCTAAC-AATTTCATG-  991
      ||||||| ||||||||||||||||||||| ||||||||| | ||||||| 
seq2  TCGTGAATCAGCTTGGCAGGCCAGAGCAATCGTGCTAACTATTTTCATGC  1000

seq1  CTGTTTTAAGACTTTCTAACT-AAGCAACAAGTACCAACAACCAG-ATGT  1039
      ||| |||||||||||||||||  ||||||||||| |||| |||||  |||
seq2  CTGGTTTAAGACTTTCTAACTCTAGCAACAAGTATCAAC-ACCAGTTTGT  1049

seq1  GCCCTG-ATTTAAAAAAAAAAAA--GAAGAATGAACATCGGCT--TCTAG  1084
      |||||| ||||||||||||||||  |||| ||| |||||||||  |||||
seq2  GCCCTGAATTTAAAAAAAAAAAAAGGAAG-ATGGACATCGGCTTCTCTAG  1098

seq1  GGACAG-AGATTTGT-AAAACAGGAAAGCAC-TCATCAAGAAGC-AAAAC  1130
      | || | |||||||| ||||||||||  ||| |||||||| ||| |||||
seq2  GAACCGAAGATTTGTAAAAACAGGAAGTCACTTCATCAAGGAGCTAAAAC  1148

seq1  CACCAAGC--ATCCTGGCCTGGGGCATG--CATCCTCTCCGGCTAAACAT  1176
       | |||||   || |||||| |||||||   ||||||||||||| |||||
seq2  TATCAAGCCATTCTTGGCCTTGGGCATGGCAATCCTCTCCGGCT-AACAT  1197

seq1  GG--CCAACCGA  1186
      ||  | ||||||
seq2  GGGCCAAACCGA  1209

seq1: chr17_83645951_83646014
seq2: B6Ng01-240N06.g_73_136 (reverse)

seq1  CCCCCCACCCCCACCCAGAGTCTCTTCTCACCCTCTTCCTCCCCAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCCACCCAGAGTCTCTTCTCACCCTCTTCCTCCCCAAAGTC  50

seq1  CTTGGACTTCCTGT  64
      ||||||||||||||
seq2  CTTGGACTTCCTGT  64