BAC Information

Click to search

BAC

Clone NameB6Ng01-241C14
Chromosome17 (Build37)
Map Location 6,766,907 - 6,942,965
singlet/doubletdoublet
Overlap geneLOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2
Upstream gene3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536
Downstream geneLOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241C14.bB6Ng01-241C14.g
ACCGA051147GA051148
length378234
definitionB6Ng01-241C14.b B6Ng01-241C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,942,588 - 6,942,965)(6,766,907 - 6,767,098)
sequence
aacattaagaaccatgtaaccgagacacttgatctgacacaggggcagtc
gggaaaccgatgactgcagtaatcaccactgtacaaaaatgttagtgggt
tttgtgcacgtaaaatgcacacttccatttcctgtcagtttcttatttga
aaaaaaaaaaatacacaccgagagcatccagactccagccctgaagggac
gccggcctctttattgtgagcaacttgttcccgttttcagtttgtcttcc
ttcctttcgcggactagcctccttggttgtgatgtctgtcctgtgcgggt
gactccgcaccagatttacacacaataaaagctctccaaggccttgtgtc
tgattgcatggggggggttggggtggga
aggttgtccaggctgttaggcttggcagtgagcatccttcccccaaaagt
catctcactggtctctggttgttaaaatgtgaatatatgtacaggggagg
gcacaagcccacatgcacacattgggggtaaggaatgcgaggggggggga
gcacaagcccatgtgcacacatggggggaggggatggggggacgcattcc
atacccccattgtgtgcatgtgggcttgtgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_6942588_6942965
seq2: B6Ng01-241C14.b_49_426 (reverse)

seq1  TCCCACCCCAACCCCCCCCATGCAATCAGACACAAGGCCTTGGAGAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCAACCCCCCCCATGCAATCAGACACAAGGCCTTGGAGAGCTT  50

seq1  TTATTGTGTGTAAATCTGGTGCGGAGTCACCCGCACAGGACAGACATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGTGTAAATCTGGTGCGGAGTCACCCGCACAGGACAGACATCAC  100

seq1  AACCAAGGAGGCTAGTCCGCGAAAGGAAGGAAGACAAACTGAAAACGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGAGGCTAGTCCGCGAAAGGAAGGAAGACAAACTGAAAACGGGA  150

seq1  ACAAGTTGCTCACAATAAAGAGGCCGGCGTCCCTTCAGGGCTGGAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGCTCACAATAAAGAGGCCGGCGTCCCTTCAGGGCTGGAGTCTG  200

seq1  GATGCTCTCGGTGTGTATTTTTTTTTTTTCAAATAAGAAACTGACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTCGGTGTGTATTTTTTTTTTTTCAAATAAGAAACTGACAGGAA  250

seq1  ATGGAAGTGTGCATTTTACGTGCACAAAACCCACTAACATTTTTGTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTGTGCATTTTACGTGCACAAAACCCACTAACATTTTTGTACAG  300

seq1  TGGTGATTACTGCAGTCATCGGTTTCCCGACTGCCCCTGTGTCAGATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTACTGCAGTCATCGGTTTCCCGACTGCCCCTGTGTCAGATCAA  350

seq1  GTGTCTCGGTTACATGGTTCTTAATGTT  378
      ||||||||||||||||||||||||||||
seq2  GTGTCTCGGTTACATGGTTCTTAATGTT  378

seq1: chr17_6766907_6767098
seq2: B6Ng01-241C14.g_69_260

seq1  AGGTTGTCCAGGCTGTTAGGCTTGGCAGTGAGCATCCTTCCCCCAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCCAGGCTGTTAGGCTTGGCAGTGAGCATCCTTCCCCCAAAAGT  50

seq1  CATCTCACTGGTCTCTGGTTGTTAAAATGTGAATATATGTACAGGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACTGGTCTCTGGTTGTTAAAATGTGAATATATGTACAGGGGAGG  100

seq1  GCACAAGCCCACATGCACACATTGGGGGTAAGGAATGCGAGGGGGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCCACATGCACACATTGGGGGTAAGGAATGCGAGGGGGGGGGA  150

seq1  GCACAAGCCCATGTGCACACATGGGGGGAGGGGATGGGGGGA  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCCATGTGCACACATGGGGGGAGGGGATGGGGGGA  192