BAC Information

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BAC

Clone NameB6Ng01-243E13
Chromosome17 (Build37)
Map Location 41,508,251 - 41,595,785
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243E13.bB6Ng01-243E13.g
ACCGA052710GA052711
length1,1451,084
definitionB6Ng01-243E13.b B6Ng01-243E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,594,636 - 41,595,785)(41,508,251 - 41,509,339)
sequence
gaattcctcaacttaatgatttccatgaaagatacaaccatttatttttt
tttcgaatcttcaaaataatggattctagttctacactaactattcttaa
tcatagtggttatagatataataaataaatataaagaattgttacatgca
acctaacttttaaggatgattcacaaatgtaaagaaagaggaacttttgc
tgctgctgagttgcaaatcaacacttcaataaaagtaattagtttggagg
atactcaaaaaaattaaaaatagcatgtccatgtgactaatgcatttcac
tcttgggtgtataccagataactcaatgcctaatacatagagatatttgg
aagcccttatttattgatacttcattcactatataaagaaaatgaaaggg
acttagaagtccatcagcaaaggaattggcaatgaaatctggaacgtaca
taaaataaagttattcatctctaaagaaaaataaaatcacagaatttata
gtcaaatcgatgcacttagaatattttatatcaattgatgtcacacagtc
tcagaaagaaaaaagccacacatttttcctcatatagaaattctagcctt
caatatatgcttatgtatttgtgtacacaagcatatgtgtggatataata
taatgtaaagaaaaggaaatggtaaatattatatgatgaggaagatgata
cgaacaaaagagagataaagctacttttttctgattgcagttttgtcata
cattttatttttaaggtcaaggagataagtgcagtaattagaattgatag
ttgtggtataatgctcattgtgcaatgctatggcttcagaatcactcttc
taactatatggatattcattcattgagacgtggagagtttgggcttgtat
aatctcattgagtgatttttttttaatttaaacattcttagcaataaagt
tttagaaaaaaattcagatacactttaatttctgagggctagtctcatag
ttttgggaagtgtaatacataggtgcttctaagaaaaaaagtaattcaac
tactccttagctatagccttgtgaactgctcacagaatatccaatgggtc
atagtaccttaatattcatgagaccaagctacagctgtctaattg

gaattcctgtctgtataaacaactaggtctctgattctcttaccttctct
tgggctcttttttccctgttgtttcttctttcaacttcaatgtgatagtt
tttgttttatcctactatattttattttgttttattagtagtattatatt
atcttttagaagcttttttttctaatgagagatagaaaaggaatgggtaa
tgatggaagagaaggcgaggaataactcagaggaataaaggaagggtaaa
ctggaatcaggatatagtatgtgaaaaaagtatttcttttcaataatagg
aaaaaagaaaatatacagaagtaaaatatagattatttaaaaagaagaat
taaattaaaatacatgtgacaagaatagtaaatggggccgggcagtggtg
gtgcatgcctttaatctcagcacttgggaggcagaggcaggtggattttt
gagttcgaggccagtctggtctacagagtgagttccaggacagccagggc
tacacagagaaaccttgtctcaaaaaacaaaacaaaaaaacaaaacaaaa
caaaacacaaaaaagaaaagaaaagaaagaaagagagagagagagagaga
gagagagagagagagagagaaggaaggaaggaaggaaggaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagagagagagagaacagcaa
atgtgatattaatgagtagttccagcatgtgattaatgagaagcaagtat
aaaggcaacagagaatgatacactgtcatgtaaacaaagtagacaaaccc
tctagagccaaaatattgtcttcatatttcaataattcaccaggtaaata
acagtgagtttgatattacatgcttaagcatatttccacaggaggaaata
aaatactgctaagtttctaaacagtcaaggaaaagaagacatccacaggt
ggacaatatgtagatagcatcattgggtattgacagcctggaacatctaa
gaaagtcaagcctgtctcagttgtcatcagcaaaatgcacattgcttcag
accttttatgattggtgaacagaatcaagggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41594636_41595785
seq2: B6Ng01-243E13.b_47_1191 (reverse)

seq1  CAATTAGACAGCTGTTGGTTGTGCTCATG-ATATAAGGGTTACTATTGAA  49
      ||||||||||||||| | |||  |||||| |||| | || ||||| ||| 
seq2  CAATTAGACAGCTGTAGCTTGGTCTCATGAATATTAAGG-TACTA-TGAC  48

seq1  CCATTGGGATA-TCTGGTTGAGCAGGTTCACAAGCTTAATAGCTAAGGAG  98
      ||||| ||||| ||||  |||||| |||||||||  | ||||||||||| 
seq2  CCATT-GGATATTCTG--TGAGCA-GTTCACAAGGCT-ATAGCTAAGGA-  92

seq1  GTAGGTGGGTTAC-TTTTTTCTTAGAAGCACCTATGTATTACACCTTCCA  147
      |||| ||  |||| |||||||||||||||||||||||||||||| | |||
seq2  GTAGTTGAATTACTTTTTTTCTTAGAAGCACCTATGTATTACACTTCCCA  142

seq1  AAACTATGAGAACTAGCCCTCAGAAATT-AAGTGTATCTGAATTTTTTTC  196
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AAACTATGAG-ACTAGCCCTCAGAAATTAAAGTGTATCTGAATTTTTTTC  191

seq1  TAAAACTTTATTGCTAAGAATGTTTAAATTAAAAAAAAATCACTCAATGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTATTGCTAAGAATGTTTAAATTAAAAAAAAATCACTCAATGA  241

seq1  GATTATACAAGCCCAAACTCTCCACGTCTCAATGAATGAATATCCATATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATACAAGCCCAAACTCTCCACGTCTCAATGAATGAATATCCATATA  291

seq1  GTTAGAAGAGTGATTCTGAAGCCATAGCATTGCACAATGAGCATTATACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGAGTGATTCTGAAGCCATAGCATTGCACAATGAGCATTATACC  341

seq1  ACAACTATCAATTCTAATTACTGCACTTATCTCCTTGACCTTAAAAATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATCAATTCTAATTACTGCACTTATCTCCTTGACCTTAAAAATAA  391

seq1  AATGTATGACAAAACTGCAATCAGAAAAAAGTAGCTTTATCTCTCTTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGACAAAACTGCAATCAGAAAAAAGTAGCTTTATCTCTCTTTTG  441

seq1  TTCGTATCATCTTCCTCATCATATAATATTTACCATTTCCTTTTCTTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATCATCTTCCTCATCATATAATATTTACCATTTCCTTTTCTTTAC  491

seq1  ATTATATTATATCCACACATATGCTTGTGTACACAAATACATAAGCATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATATCCACACATATGCTTGTGTACACAAATACATAAGCATAT  541

seq1  ATTGAAGGCTAGAATTTCTATATGAGGAAAAATGTGTGGCTTTTTTCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGCTAGAATTTCTATATGAGGAAAAATGTGTGGCTTTTTTCTTT  591

seq1  CTGAGACTGTGTGACATCAATTGATATAAAATATTCTAAGTGCATCGATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTGTGTGACATCAATTGATATAAAATATTCTAAGTGCATCGATT  641

seq1  TGACTATAAATTCTGTGATTTTATTTTTCTTTAGAGATGAATAACTTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATAAATTCTGTGATTTTATTTTTCTTTAGAGATGAATAACTTTAT  691

seq1  TTTATGTACGTTCCAGATTTCATTGCCAATTCCTTTGCTGATGGACTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTACGTTCCAGATTTCATTGCCAATTCCTTTGCTGATGGACTTCT  741

seq1  AAGTCCCTTTCATTTTCTTTATATAGTGAATGAAGTATCAATAAATAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTTTCATTTTCTTTATATAGTGAATGAAGTATCAATAAATAAGG  791

seq1  GCTTCCAAATATCTCTATGTATTAGGCATTGAGTTATCTGGTATACACCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAATATCTCTATGTATTAGGCATTGAGTTATCTGGTATACACCC  841

seq1  AAGAGTGAAATGCATTAGTCACATGGACATGCTATTTTTAATTTTTTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGAAATGCATTAGTCACATGGACATGCTATTTTTAATTTTTTTGA  891

seq1  GTATCCTCCAAACTAATTACTTTTATTGAAGTGTTGATTTGCAACTCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCCAAACTAATTACTTTTATTGAAGTGTTGATTTGCAACTCAGC  941

seq1  AGCAGCAAAAGTTCCTCTTTCTTTACATTTGTGAATCATCCTTAAAAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAAGTTCCTCTTTCTTTACATTTGTGAATCATCCTTAAAAGTT  991

seq1  AGGTTGCATGTAACAATTCTTTATATTTATTTATTATATCTATAACCACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCATGTAACAATTCTTTATATTTATTTATTATATCTATAACCACT  1041

seq1  ATGATTAAGAATAGTTAGTGTAGAACTAGAATCCATTATTTTGAAGATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAAGAATAGTTAGTGTAGAACTAGAATCCATTATTTTGAAGATTC  1091

seq1  GAAAAAAAAATAAATGGTTGTATCTTTCATGGAAATCATTAAGTTGAGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATAAATGGTTGTATCTTTCATGGAAATCATTAAGTTGAGGA  1141

seq1  ATTC  1150
      ||||
seq2  ATTC  1145


seq1: chr17_41508251_41509339
seq2: B6Ng01-243E13.g_65_1148

seq1  GAATTCCTGTCTGTATAAACAACTAGGTCTCTGATTCTCTTACCTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGTATAAACAACTAGGTCTCTGATTCTCTTACCTTCTCT  50

seq1  TGGGCTCTTTTTTCCCTGTTGTTTCTTCTTTCAACTTCAATGTGATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTTTTTCCCTGTTGTTTCTTCTTTCAACTTCAATGTGATAGTT  100

seq1  TTTGTTTTATCCTACTATATTTTATTTTGTTTTATTAGTAGTATTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATCCTACTATATTTTATTTTGTTTTATTAGTAGTATTATATT  150

seq1  ATCTTTTAGAAGCTTTTTTTTCTAATGAGAGATAGAAAAGGAATGGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAGAAGCTTTTTTTTCTAATGAGAGATAGAAAAGGAATGGGTAA  200

seq1  TGATGGAAGAGAAGGCGAGGAATAACTCAGAGGAATAAAGGAAGGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAGAGAAGGCGAGGAATAACTCAGAGGAATAAAGGAAGGGTAAA  250

seq1  CTGGAATCAGGATATAGTATGTGAAAAAAGTATTTCTTTTCAATAATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCAGGATATAGTATGTGAAAAAAGTATTTCTTTTCAATAATAGG  300

seq1  AAAAAAGAAAATATACAGAAGTAAAATATAGATTATTTAAAAAGAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAATATACAGAAGTAAAATATAGATTATTTAAAAAGAAGAAT  350

seq1  TAAATTAAAATACATGTGACAAGAATAGTAAATGGGGCCGGGCAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAATACATGTGACAAGAATAGTAAATGGGGCCGGGCAGTGGTG  400

seq1  GTGCATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTTT  450

seq1  GAGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  500

seq1  TACACAGAGAAACCTTGTCTCAAAAAACAAAACAAAAAAACAAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCTTGTCTCAAAAAACAAAACAAAAAAACAAAACAAAA  550

seq1  CAAAACACAAAAAAGAAAAGAAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACAAAAAAGAAAAGAAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  600

seq1  GAGAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAG  650

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAACAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAACAGCAA  700

seq1  ATGTGATATTAATGAGTAGTTCCAGCATGTGATTAATGAGAAGCAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATATTAATGAGTAGTTCCAGCATGTGATTAATGAGAAGCAAGTAT  750

seq1  AAAGGCAACAGAGAATGATACACTGTCATGTAAACAAAGTAGACAAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAACAGAGAATGATACACTGTCATGTAAACAAAGTAGACAAACCC  800

seq1  TCTAGAGCCAAAATATTGTCTTCATATTTCAATAATTCACCAGGTAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGCCAAAATATTGTCTTCATATTTCAATAATTCACCAGGTAAATA  850

seq1  ACAGTGAGTTTGATATTACATGCTTAAGCATATTTCCACAGGAGGAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGTTTGATATTACATGCTTAAGCATATTTCCACAGGAGGAAATA  900

seq1  AAATACTGCTAAGTTTCTAAACAGTCAAGGAAAAGAAGACATCCACAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGCTAAGTTTCTAAACAGTCAAGGAAAAGAAGACATCCACAGGT  950

seq1  GGACAAATATGTAGATAGCATCATT-GGTATTGACAGCCTGGAACATCTT  999
      |||| |||||||||||||||||||| |||||||||||||||||||||| |
seq2  GGAC-AATATGTAGATAGCATCATTGGGTATTGACAGCCTGGAACATC-T  998

seq1  AAGAAAGTCAAGCCCTGTCTCCAGTTGTCCATCAGGCAAAATGCACATTG  1049
      |||||||||||| ||||||| ||||||| ||||| |||||||||||||||
seq2  AAGAAAGTCAAG-CCTGTCT-CAGTTGT-CATCA-GCAAAATGCACATTG  1044

seq1  CTTTCAGACTTTTTATGAGTGGTG-ACAGATCCAAGGGTAA  1089
      | ||||||| |||||||| ||||| |||||  |||||||||
seq2  C-TTCAGACCTTTTATGATTGGTGAACAGAATCAAGGGTAA  1084


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