BAC Information

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BAC

Clone NameB6Ng01-243J19
Chromosome17 (Build37)
Map Location 46,982,497 - 47,151,004
singlet/doubletdoublet
Overlap geneBC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneEG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243J19.bB6Ng01-243J19.g
ACCGA052946GA052947
length4311,062
definitionB6Ng01-243J19.b B6Ng01-243J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,982,497 - 46,982,933)(47,149,946 - 47,151,004)
sequence
agattcccagggcaagtggttttatacgctgagccacctccctgattcag
tgcccaaactttaaaaatataattaactttattaggaagtagctcggttt
atctaagatattaattagaagtgtaattaatatacttaaaagacacctga
cattcttgggttttgtttttgtttctttcaagacagggtttcaagacagg
catgcagatctatgagacagaggccagcctggtctacagagtgagttcca
ggacagccagggccacagagaaaccctgtctcgaaaaaaatttttttaat
tttttgaagaattgaactgagcatggtgacgtaggcctgcaatctgggag
gctcacaatggaaagtgaggctcagggctagcctgagctatatagtaaga
ccactgcctcaacatgaggagggggagaggg
gaattccttggccatacatgtagtccagacaacaaatatcatcaaacact
aaagaaatatcgtatgagtcagctgctctgcccacagtacaatacaatga
ggtagccacagaactacacacatctggaggtttaagcatatatcgaagga
cagagactaaggttgggagatgctcatcaatagatggcaggaagatccga
tccgccaaatatgtggaatgctgttaagacattctatgggggattgtggg
caggttggtgtggtgccctcctggagtcacagccctgaggaggcataggg
agaggatggctgcaaggtcaaagccgacctggtcttcagcatgaatgcta
aggctgaatagaggtcctgcctcaaacaaactaacttatagatgaaatta
tatattaacatgcattgcgttcataaacctgtcggtctctgttttgtttc
caagccaagaaatacctagagccatagacattcaaaccagaggtttaact
caaaacccaccagaccagaaggtctgatgtctcatttccaggctttagag
ttccgtattgtatacatagacaagcttcagagccattgtcctaatatatt
cataatgaaaaacgaaagactgataacccatccaactcatgcacttttaa
aaagagcatcataaatctcaaagtaatcagaaacatcgacgtggtagtca
gggataaattttggagggttgtggagagtgctcagtcattaaagcacttt
tcgtgcagacatgagagtcagagtaaaatctccagaacccacataaatgc
caagtgggtacaatcctccataaatgtcacctccccccctcagcccgaaa
tcaagctgagcaggcttgactgttatcaccagcagatcataggggttgga
gcctgccaccctatcgtttctgccactccactgctaccggcctgccgcct
agcttgtttcagagtattcacgtggtcaccttgcagctggaactccggca
ggatgtatttggtgggaaatgggcccctcccctttctataacccgtgttc
caaatataaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46982497_46982933
seq2: B6Ng01-243J19.b_44_480

seq1  GAATTCAGATTCCCAGGGCAAGTGGTTTTATACGCTGAGCCACCTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCCAGGGCAAGTGGTTTTATACGCTGAGCCACCTCCCTG  50

seq1  ATTCAGTGCCCAAACTTTAAAAATATAATTAACTTTATTAGGAAGTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGCCCAAACTTTAAAAATATAATTAACTTTATTAGGAAGTAGCT  100

seq1  CGGTTTATCTAAGATATTAATTAGAAGTGTAATTAATATACTTAAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTATCTAAGATATTAATTAGAAGTGTAATTAATATACTTAAAAGAC  150

seq1  ACCTGACATTCTTGGGTTTTGTTTTTGTTTCTTTCAAGACAGGGTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACATTCTTGGGTTTTGTTTTTGTTTCTTTCAAGACAGGGTTTCAA  200

seq1  GACAGGCATGCAGATCTATGAGACAGAGGCCAGCCTGGTCTACAGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCATGCAGATCTATGAGACAGAGGCCAGCCTGGTCTACAGAGTGA  250

seq1  GTTCCAGGACAGCCAGGGCCACAGAGAAACCCTGTCTCGAAAAAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCCACAGAGAAACCCTGTCTCGAAAAAAATTTT  300

seq1  TTTAATTTTTTGAAGAATTGAACTGAGCATGGTGACGTAGGCCTGCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTTGAAGAATTGAACTGAGCATGGTGACGTAGGCCTGCAATC  350

seq1  TGGGAGGCTCACAATGGAAAGTGAGGCTCAGGGCTAGCCTGAGCTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCTCACAATGGAAAGTGAGGCTCAGGGCTAGCCTGAGCTATATA  400

seq1  GTAAGACCACTGCCTCAACATGAGGAGGGGGAGAGGG  437
      |||||||||||||||||||||||||||||||||||||
seq2  GTAAGACCACTGCCTCAACATGAGGAGGGGGAGAGGG  437

seq1: chr17_47149946_47151004
seq2: B6Ng01-243J19.g_66_1127 (reverse)

seq1  ATTTTAATATTTGGGAACACGGGGTTATAAAGAAGGGGGAGGGGCCCA-T  49
      ||||| |||||| ||||||| |||||||  |||| ||||||||||||| |
seq2  ATTTT-ATATTT-GGAACAC-GGGTTAT--AGAAAGGGGAGGGGCCCATT  45

seq1  TCCCGCCAAAT-CAT-CTTCCGGAG-TCCAGCTGC-AGGTGACCACGTGA  95
      |||| |||||| ||| || |||||| ||||||||| ||||||||||||||
seq2  TCCCACCAAATACATCCTGCCGGAGTTCCAGCTGCAAGGTGACCACGTGA  95

seq1  ATACTCTGGAAC-AGCTAGGCGGCAGG-CGGTAGCAGTGGGAGTGGCAG-  142
      |||||||| ||| |||||||||||||| |||||||||| |||||||||| 
seq2  ATACTCTGAAACAAGCTAGGCGGCAGGCCGGTAGCAGT-GGAGTGGCAGA  144

seq1  AACGATAGGGTGGCAGGCTCC-ACCCCTATGATCTGCTGGTGATAACAGT  191
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACGATAGGGTGGCAGGCTCCAACCCCTATGATCTGCTGGTGATAACAGT  194

seq1  CAAGCCTGCTCAGCTTGATTTCGGGCTGAGGGGGGGAGGTGACATTTATG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCTCAGCTTGATTTCGGGCTGAGGGGGGGAGGTGACATTTATG  244

seq1  GAGGATTGTACCCACTTGGCATTTATGTGGGTTCTGGAGATTTTACTCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTACCCACTTGGCATTTATGTGGGTTCTGGAGATTTTACTCTG  294

seq1  ACTCTCATGTCTGCACGAAAAGTGCTTTAATGACTGAGCACTCTCCACAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGTCTGCACGAAAAGTGCTTTAATGACTGAGCACTCTCCACAA  344

seq1  CCCTCCAAAATTTATCCCTGACTACCACGTCGATGTTTCTGATTACTTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAATTTATCCCTGACTACCACGTCGATGTTTCTGATTACTTTG  394

seq1  AGATTTATGATGCTCTTTTTAAAAGTGCATGAGTTGGATGGGTTATCAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATGATGCTCTTTTTAAAAGTGCATGAGTTGGATGGGTTATCAGT  444

seq1  CTTTCGTTTTTCATTATGAATATATTAGGACAATGGCTCTGAAGCTTGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGTTTTTCATTATGAATATATTAGGACAATGGCTCTGAAGCTTGTC  494

seq1  TATGTATACAATACGGAACTCTAAAGCCTGGAAATGAGACATCAGACCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACAATACGGAACTCTAAAGCCTGGAAATGAGACATCAGACCTT  544

seq1  CTGGTCTGGTGGGTTTTGAGTTAAACCTCTGGTTTGAATGTCTATGGCTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGGTGGGTTTTGAGTTAAACCTCTGGTTTGAATGTCTATGGCTC  594

seq1  TAGGTATTTCTTGGCTTGGAAACAAAACAGAGACCGACAGGTTTATGAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTCTTGGCTTGGAAACAAAACAGAGACCGACAGGTTTATGAAC  644

seq1  GCAATGCATGTTAATATATAATTTCATCTATAAGTTAGTTTGTTTGAGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCATGTTAATATATAATTTCATCTATAAGTTAGTTTGTTTGAGGC  694

seq1  AGGACCTCTATTCAGCCTTAGCATTCATGCTGAAGACCAGGTCGGCTTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTATTCAGCCTTAGCATTCATGCTGAAGACCAGGTCGGCTTTG  744

seq1  ACCTTGCAGCCATCCTCTCCCTATGCCTCCTCAGGGCTGTGACTCCAGGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGCCATCCTCTCCCTATGCCTCCTCAGGGCTGTGACTCCAGGA  794

seq1  GGGCACCACACCAACCTGCCCACAATCCCCCATAGAATGTCTTAACAGCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCACACCAACCTGCCCACAATCCCCCATAGAATGTCTTAACAGCA  844

seq1  TTCCACATATTTGGCGGATCGGATCTTCCTGCCATCTATTGATGAGCATC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATATTTGGCGGATCGGATCTTCCTGCCATCTATTGATGAGCATC  894

seq1  TCCCAACCTTAGTCTCTGTCCTTCGATATATGCTTAAACCTCCAGATGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCTTAGTCTCTGTCCTTCGATATATGCTTAAACCTCCAGATGTG  944

seq1  TGTAGTTCTGTGGCTACCTCATTGTATTGTACTGTGGGCAGAGCAGCTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCTGTGGCTACCTCATTGTATTGTACTGTGGGCAGAGCAGCTGA  994

seq1  CTCATACGATATTTCTTTAGTGTTTGATGATATTTGTTGTCTGGACTACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACGATATTTCTTTAGTGTTTGATGATATTTGTTGTCTGGACTACA  1044

seq1  TGTATGGCCAAGGAATTC  1059
      ||||||||||||||||||
seq2  TGTATGGCCAAGGAATTC  1062