BAC Information

Click to search

BAC

Clone NameB6Ng01-243K14
Chromosome17 (Build37)
Map Location 45,769,363 - 45,966,213
singlet/doubletdoublet
Overlap geneCapn11, Tmem63b, Mrpl14, LOC100043363
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243K14.bB6Ng01-243K14.g
ACCGA052984GA052985
length1,103381
definitionB6Ng01-243K14.b B6Ng01-243K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,965,115 - 45,966,213)(45,769,363 - 45,769,749)
sequence
gaattccataaaattaagatttcctactcggggatttttcattttactta
agagtgtcatgcagcaagccgtctcttgggacctttctgtcttggattcc
tattgcctggttccatcacactgtggcatgttaggctaggctggtcgttt
ttcttgaccgctgtctaacgtttcaccatgtgaccgcgtggccgcactca
ttcacccactctgatgcttatggccacaggggcaggccccagatttttct
cccgtgagccatgctgctctgaacattctcactctggtctcctgcttcag
cagatgatgtcacagagtcaagtctgcttaaataaaccaaggcgggaggg
ttgtatatcttcaacagaaaagaagcaagctcttaaagaaacttcccagc
agggccccccactctcgactgtgctcaccgaacaatggatccacaaagag
gcttccaaggctagtgaccaacccagcactgtggaacaaggacatcttga
acaactctcctaccacgagagcgttttgacatcccagagtggcggtaagg
aagcgggtaaccacaggggctgctcactgagctgtgtgcagggctgtagc
cccaacgtgtctcgctgtacacttgggatgcaccaccccagatagcaacc
ccaactcccatgccagaccacagtgggcatgcactgtcggtgactacagc
tggcaagtgttccaaatgggaaatgaatcgcagccccaggcctgcccctg
ccctgctgggttcctctggggaccctggttgaatcaccaacctttgtgag
actggagtggccttacttgagccccagggaggtgcacacccagtgagata
agaggtctaacatccttttggatgggagagaatgttcgagagggtggaga
acctgagtgtagagccaggtaagagaggaggcttctcttgcccagctcaa
attacacttgttcactgtcaactcagggaatatggatagctctctcaggc
aaaaaatattggtatcaagggccctctcttacactaccatggggagtgga
ccatactactggactaggatggcataccaggccttgcataaggacaagga
aat
atgaagctccagcttgccagaaccatctttctagggagattagtcaagga
taagaggaaagagggcattctggggaagaggaaacaaaaggtgtccacag
tctacacaggcttggggttcctcaatgctaacagccagaactgggagctc
cagctacgccacccccctccccccagatctcttccctatcacagggaaag
ggcactgatgctggagggagagatggcagggagaagatgggaaacacccc
agtaggctagccacagggcagaaagatacatccaggaggttgatcatccg
gcgacagacttccaagctaaagcccttcgtcttgaagttccttactgtga
aggaggggtggggtgggaagaagaggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45965115_45966213
seq2: B6Ng01-243K14.b_47_1149 (reverse)

seq1  ATTTCCTTGTCCTTATGCAGGGCCTTGTATGCCATCCTGCTCCTGTAAGT  50
      ||||||||||||||||||| ||||| ||||||||||||  ||| || |||
seq2  ATTTCCTTGTCCTTATGCAAGGCCTGGTATGCCATCCTAGTCCAGT-AGT  49

seq1  ATGGTCCACTCCCATTGGTAGTGTAAGAGAGGGGCCCTGATA-CAATA-T  98
      |||||||||||||  |||||||||||||||||| || ||||| ||||| |
seq2  ATGGTCCACTCCCCATGGTAGTGTAAGAGAGGGCCCTTGATACCAATATT  99

seq1  TTTTGCCTGGAGAGGAGCTAT-CATATTCCCTGAGTTGACAGTGA--CAG  145
      |||||||| |||| ||||||| |||||||||||||||||||||||   ||
seq2  TTTTGCCT-GAGA-GAGCTATCCATATTCCCTGAGTTGACAGTGAACAAG  147

seq1  TGTAATTTGGAGCTGGGCAAGAGAGGCCTCCTCTCTT-CCTGGCTCTACA  194
      |||||||| ||||||||||||||| |||||||||||| ||||||||||||
seq2  TGTAATTT-GAGCTGGGCAAGAGAAGCCTCCTCTCTTACCTGGCTCTACA  196

seq1  CTCAGGTTCTCCACCCTCTCGAACATTCTCTCCAATCC-AAAGGATGTTA  243
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  CTCAGGTTCTCCACCCTCTCGAACATTCTCTCCCATCCAAAAGGATGTTA  246

seq1  GACCTCTTATCTCACTGGGTGTGCACCTCCCTGGGGCTC-AGTAAGGCCA  292
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACCTCTTATCTCACTGGGTGTGCACCTCCCTGGGGCTCAAGTAAGGCCA  296

seq1  CTCCAGTCTCACAAAGGTTGGTGATTCAACCAGGGTCCCCAGAGGAACCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCTCACAAAGGTTGGTGATTCAACCAGGGTCCCCAGAGGAACCC  346

seq1  AGCAGGGCAGGGGCAGGCCTGGGGCTGCGATTCATTTCCCATTTGGAACA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAGGGGCAGGCCTGGGGCTGCGATTCATTTCCCATTTGGAACA  396

seq1  CTTGCCAGCTGTAGTCACCGACAGTGCATGCCCACTGTGGTCTGGCATGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGCTGTAGTCACCGACAGTGCATGCCCACTGTGGTCTGGCATGG  446

seq1  GAGTTGGGGTTGCTATCTGGGGTGGTGCATCCCAAGTGTACAGCGAGACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGGTTGCTATCTGGGGTGGTGCATCCCAAGTGTACAGCGAGACA  496

seq1  CGTTGGGGCTACAGCCCTGCACACAGCTCAGTGAGCAGCCCCTGTGGTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGGCTACAGCCCTGCACACAGCTCAGTGAGCAGCCCCTGTGGTTA  546

seq1  CCCGCTTCCTTACCGCCACTCTGGGATGTCAAAACGCTCTCGTGGTAGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCCTTACCGCCACTCTGGGATGTCAAAACGCTCTCGTGGTAGGA  596

seq1  GAGTTGTTCAAGATGTCCTTGTTCCACAGTGCTGGGTTGGTCACTAGCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTCAAGATGTCCTTGTTCCACAGTGCTGGGTTGGTCACTAGCCT  646

seq1  TGGAAGCCTCTTTGTGGATCCATTGTTCGGTGAGCACAGTCGAGAGTGGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCTCTTTGTGGATCCATTGTTCGGTGAGCACAGTCGAGAGTGGG  696

seq1  GGGCCCTGCTGGGAAGTTTCTTTAAGAGCTTGCTTCTTTTCTGTTGAAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCTGGGAAGTTTCTTTAAGAGCTTGCTTCTTTTCTGTTGAAGA  746

seq1  TATACAACCCTCCCGCCTTGGTTTATTTAAGCAGACTTGACTCTGTGACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACCCTCCCGCCTTGGTTTATTTAAGCAGACTTGACTCTGTGACA  796

seq1  TCATCTGCTGAAGCAGGAGACCAGAGTGAGAATGTTCAGAGCAGCATGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCTGAAGCAGGAGACCAGAGTGAGAATGTTCAGAGCAGCATGGC  846

seq1  TCACGGGAGAAAAATCTGGGGCCTGCCCCTGTGGCCATAAGCATCAGAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGAGAAAAATCTGGGGCCTGCCCCTGTGGCCATAAGCATCAGAGT  896

seq1  GGGTGAATGAGTGCGGCCACGCGGTCACATGGTGAAACGTTAGACAGCGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATGAGTGCGGCCACGCGGTCACATGGTGAAACGTTAGACAGCGG  946

seq1  TCAAGAAAAACGACCAGCCTAGCCTAACATGCCACAGTGTGATGGAACCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAAACGACCAGCCTAGCCTAACATGCCACAGTGTGATGGAACCA  996

seq1  GGCAATAGGAATCCAAGACAGAAAGGTCCCAAGAGACGGCTTGCTGCATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGGAATCCAAGACAGAAAGGTCCCAAGAGACGGCTTGCTGCATG  1046

seq1  ACACTCTTAAGTAAAATGAAAAATCCCCGAGTAGGAAATCTTAATTTTAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTAAGTAAAATGAAAAATCCCCGAGTAGGAAATCTTAATTTTAT  1096

seq1  GGAATTC  1099
      |||||||
seq2  GGAATTC  1103

seq1: chr17_45769363_45769749
seq2: B6Ng01-243K14.g_66_452

seq1  GAATTCATGAAGCTCCAGCTTGCCAGAACCATCTTTCTAGGGAGATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGCTCCAGCTTGCCAGAACCATCTTTCTAGGGAGATTAGT  50

seq1  CAAGGATAAGAGGAAAGAGGGCATTCTGGGGAAGAGGAAACAAAAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATAAGAGGAAAGAGGGCATTCTGGGGAAGAGGAAACAAAAGGTGT  100

seq1  CCACAGTCTACACAGGCTTGGGGTTCCTCAATGCTAACAGCCAGAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTACACAGGCTTGGGGTTCCTCAATGCTAACAGCCAGAACTGG  150

seq1  GAGCTCCAGCTACGCCACCCCCCTCCCCCCAGATCTCTTCCCTATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGCTACGCCACCCCCCTCCCCCCAGATCTCTTCCCTATCACAG  200

seq1  GGAAAGGGCACTGATGCTGGAGGGAGAGATGGCAGGGAGAAGATGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGCACTGATGCTGGAGGGAGAGATGGCAGGGAGAAGATGGGAAA  250

seq1  CACCCCAGTAGGCTAGCCACAGGGCAGAAAGATACATCCAGGAGGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGTAGGCTAGCCACAGGGCAGAAAGATACATCCAGGAGGTTGAT  300

seq1  CATCCGGCGACAGACTTCCAAGCTAAAGCCCTTCGTCTTGAAGTTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGGCGACAGACTTCCAAGCTAAAGCCCTTCGTCTTGAAGTTCCTTA  350

seq1  CTGTGAAGGAGGGGTGGGGTGGGAAGAAGAGGTGGGT  387
      |||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGAGGGGTGGGGTGGGAAGAAGAGGTGGGT  387