BAC Information

Click to search

BAC

Clone NameB6Ng01-248P12
Chromosome17 (Build37)
Map Location 48,902,862 - 49,036,434
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248P12.bB6Ng01-248P12.g
ACCGA056909GA056910
length604903
definitionB6Ng01-248P12.b B6Ng01-248P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,035,831 - 49,036,434)(48,902,862 - 48,903,768)
sequence
gaattcttctggagacttgaacttggtttttttttttttttttttttttt
tttttaaacttccagaactatgagaaactagatttctctgtgtagtgatg
gggaggagcactcacaatggcattctgagcaggccaaccacaaagccgtg
gtggtttgataacaagccataagcttggtatcctgcgaggagcctggaat
ctcaaacccttcacggtattcgacaagagaaataggattacattttttcc
acattcagggtgatgtttgtgacaagactcttgcagatgctttgaatcaa
accgggggacctccgacccattattaatttgccagggcttttgcgaaggt
taggctttgtttgcagtttggttcaacagttcgtctgcctctgctgatgc
tgcaatcatttttctccttcgttctgtttcttgtgtgaaatatattgatt
gattttctgtgtgagaacaatctggcaacaccaaagcagtctttagttat
tcatggtgtcctgtacaccatgcactacccaaagattcctgtgttcagct
cactgacatgttgactgtagtctgtctgtgctcaggtaggctctctcccc
ctcc
gaattcaagactatggtgcagtgttgcttgctatggagatagacagagct
ggtgatgtctctgtctgctcgggaagatgctggggctaggtgggcttcct
ggaccttccggtggatctccttgtggagatacagactattcaagtcacag
aggtgtatggttctgaggatcgttggggtatggtgatggtttgtcttgtt
caccagctagtcaaagtaatagtcactgctgaatgcctccactgagcagt
tcttagacacacagagctagttaccatggtgtcccactcctgttagtggc
agcagaggcagaggcacagctccgtgctgtcacctacaacagtctgatga
gtttctttaatcttttagggacttagattcagctggaacccgatccttgg
actctcagaaaagaagttctagaccagtcagtatgaatcacagttggcat
ttattaagaggtagttttatcagattttaagcacaagggttaagagagaa
ggagacactgtggtagaaagtgagactgcccaacagtgcggctgtgggct
tctcagggaggagacacagacaggtgtccttcaggggctggatacacggt
tttggaagacttgagaattttattgatagatgtgtttttagggggccctc
actcccttcccctccctctattgtccttcaagtttaaaaattatacacac
atcacatacacgcacacacgcacacgcacacacacacgcacacgcacacg
cccatgtgccaaggcacttgtatcagatcagaggaaaactcccatgactc
agtctctctctccactacgtggggtcagggttcaacctcagttcttcagt
ttgacagagaagactcttatctgttgaacatcttgtgggcctggtgttat
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49035831_49036434
seq2: B6Ng01-248P12.b_47_650 (reverse)

seq1  GGAGGGGGAGAGAGCCTACCTGAGCACAGACAGACTACAGTCAACATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGAGAGCCTACCTGAGCACAGACAGACTACAGTCAACATGTC  50

seq1  AGTGAGCTGAACACAGGAATCTTTGGGTAGTGCATGGTGTACAGGACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGAACACAGGAATCTTTGGGTAGTGCATGGTGTACAGGACACC  100

seq1  ATGAATAACTAAAGACTGCTTTGGTGTTGCCAGATTGTTCTCACACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACTAAAGACTGCTTTGGTGTTGCCAGATTGTTCTCACACAGAA  150

seq1  AATCAATCAATATATTTCACACAAGAAACAGAACGAAGGAGAAAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAATATATTTCACACAAGAAACAGAACGAAGGAGAAAAATGAT  200

seq1  TGCAGCATCAGCAGAGGCAGACGAACTGTTGAACCAAACTGCAAACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATCAGCAGAGGCAGACGAACTGTTGAACCAAACTGCAAACAAAG  250

seq1  CCTAACCTTCGCAAAAGCCCTGGCAAATTAATAATGGGTCGGAGGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCTTCGCAAAAGCCCTGGCAAATTAATAATGGGTCGGAGGTCCCC  300

seq1  CGGTCTGATTCAAAGCATCTGCAAGAGTCTTGTCACAAACATCACCCTGA  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGATTCAAAGCATCTGCAAGAGTCTTGTCACAAACATCACCCTGA  350

seq1  ATGTGGAAAAAATGTAATCCTATTTCTCTTGTCGAATACCGTGAAGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTGGAAAAAATGTAATCCTATTTCTCTTGTCGAATACCGTGAAGGGTT  400

seq1  TGAGATTCCAGGCTCCTCGCAGGATACCAAGCTTATGGCTTGTTATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCCAGGCTCCTCGCAGGATACCAAGCTTATGGCTTGTTATCAAA  450

seq1  CCACCACGGCTTTGTGGTTGGCCTGCTCAGAATGCCATTGTGAGTGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGGCTTTGTGGTTGGCCTGCTCAGAATGCCATTGTGAGTGCTCC  500

seq1  TCCCCATCACTACACAGAGAAATCTAGTTTCTCATAGTTCTGGAAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCACTACACAGAGAAATCTAGTTTCTCATAGTTCTGGAAGTTTA  550

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAGTTCAAGTCTCCAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAGTTCAAGTCTCCAGAAGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604

seq1: chr17_48902862_48903768
seq2: B6Ng01-248P12.g_68_970

seq1  GAATTCAAGACTATGGTGCAGTGTTGCTTGCTATGGAGATAGACAGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTATGGTGCAGTGTTGCTTGCTATGGAGATAGACAGAGCT  50

seq1  GGTGATGTCTCTGTCTGCTCGGGAAGATGCTGGGGCTAGGTGGGCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTCTCTGTCTGCTCGGGAAGATGCTGGGGCTAGGTGGGCTTCCT  100

seq1  GGACCTTCCGGTGGATCTCCTTGTGGAGATACAGACTATTCAAGTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCCGGTGGATCTCCTTGTGGAGATACAGACTATTCAAGTCACAG  150

seq1  AGGTGTATGGTTCTGAGGATCGTTGGGGTATGGTGATGGTTTGTCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATGGTTCTGAGGATCGTTGGGGTATGGTGATGGTTTGTCTTGTT  200

seq1  CACCAGCTAGTCAAAGTAATAGTCACTGCTGAATGCCTCCACTGAGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTAGTCAAAGTAATAGTCACTGCTGAATGCCTCCACTGAGCAGT  250

seq1  TCTTAGACACACAGAGCTAGTTACCATGGTGTCCCACTCCTGTTAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACACACAGAGCTAGTTACCATGGTGTCCCACTCCTGTTAGTGGC  300

seq1  AGCAGAGGCAGAGGCACAGCTCCGTGCTGTCACCTACAACAGTCTGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAGAGGCACAGCTCCGTGCTGTCACCTACAACAGTCTGATGA  350

seq1  GTTTCTTTAATCTTTTAGGGACTTAGATTCAGCTGGAACCCGATCCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTAATCTTTTAGGGACTTAGATTCAGCTGGAACCCGATCCTTGG  400

seq1  ACTCTCAGAAAAGAAGTTCTAGACCAGTCAGTATGAATCACAGTTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGAAAAGAAGTTCTAGACCAGTCAGTATGAATCACAGTTGGCAT  450

seq1  TTATTAAGAGGTAGTTTTATCAGATTTTAAGCACAAGGGTTAAGAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGAGGTAGTTTTATCAGATTTTAAGCACAAGGGTTAAGAGAGAA  500

seq1  GGAGACACTGTGGTAGAAAGTGAGACTGCCCAACAGTGCGGCTGTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTGTGGTAGAAAGTGAGACTGCCCAACAGTGCGGCTGTGGGCT  550

seq1  TCTCAGGGAGGAGACACAGACAGGTGTCCTTCAGGGGCTGGATACACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGAGGAGACACAGACAGGTGTCCTTCAGGGGCTGGATACACGGT  600

seq1  TTTGGAAGACTTGAGAATTTTATTGATAGATGTGTTTTTAGGGGGCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGACTTGAGAATTTTATTGATAGATGTGTTTTTAGGGGGCCCTC  650

seq1  ACTCCCTTCCCCTCCCTCTATTGTCCTTCAAGTTTTAAAAATTATACACA  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTCCCTTCCCCTCCCTCTATTGTCCTTCAAG-TTTAAAAATTATACACA  699

seq1  CATCACATACACGCACACACGCACACGCACACACACACGCACACGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATACACGCACACACGCACACGCACACACACACGCACACGCACAC  749

seq1  GCCCATGTGCCAAGGCACTTGTATCAGATCAGAGGAAAACTCCCATGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGCCAAGGCACTTGTATCAGATCAGAGGAAAACTCCCATGACT  799

seq1  CAGTTCTCTCTCTCCACCACGTGGGGTCAGGGTTCAAACTCAGGTCTTCA  850
      ||| ||||||||||||| ||||||||||||||||||| ||||| ||||||
seq2  CAG-TCTCTCTCTCCACTACGTGGGGTCAGGGTTCAACCTCAGTTCTTCA  848

seq1  GGTTTGACAGAAAAGACTCTTTATCTGTTGAACATCTTGTGGGCCTGGTG  900
       |||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  -GTTTGACAGAGAAGACTC-TTATCTGTTGAACATCTTGTGGGCCTGGTG  896

seq1  TTATCCC  907
      |||||||
seq2  TTATCCC  903