BAC Information

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BAC

Clone NameB6Ng01-249A13
Chromosome17 (Build37)
Map Location 42,629,514 - 42,669,310
singlet/doubletdoublet
Overlap geneLOC627626
Upstream genenone
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249A13.bB6Ng01-249A13.g
ACCGA056959GA056960
length1,1051,195
definitionB6Ng01-249A13.b B6Ng01-249A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,629,514 - 42,630,623)(42,668,097 - 42,669,310)
sequence
gaattcttacaagcttaattattgaaagagtagctctcgtagttaagttt
cctattgctatgataaaatacatgaccaaagcaacttcaagaggaaaggg
tttatattatcttatatgtctcaggtcatacttcatcactaaggaaagtc
agggtataactcaaggcgggaatctggaagcaatagctaaagcaggatcc
atgaagtaacccagtttactgtttagctccctatgcgttgtttggctggc
ctgctttcttttgtcttctagggctttgggtccaaaagtggcacctctcc
cctgtgaactgggcccatcacagcaatcatttttgttattaatcaagact
acacttcatcacagtcaatctatggaaaacttttctcccctcttcccagt
tagatctaggtttgtatcaagttgaaaaaaaaaacagtcagaagctaacc
aatgcagaaataactgccaaggaagagggaaaagatttgtttaaagcata
ttatagtaagttgtattgttttaaatctctagtttcatgtctctgatgta
gctgtgaaattctcatgccctgatgagagttaaacatattcaagaaagaa
gggagatcaacataccaatctttccaaggcaaatgtagagaattctaact
ctaccaatgattaaaacaactagaaacatacagaaggtgctttctgtaac
atatcaaagtgaactcctattcaaattattttcatttaattggttgggtc
tgaagagattgtcttggaattaaaatatatatatatataaaacagctaga
gatattgctcactatcactcatagaatacgctcaaagaggacccattccc
atgacagctcacaaccatctggagctccagttccaggggctttaacaact
tctttttgcctagttggacaataagcacaaatatgttgcccaggaatgga
aaacactcatacccataaaataaaaataatcttttcaaaatagcatctgt
gaaaggtatcttatatttataggagaataatattgttttggagaaaagcc
attttatgtttacccatcatattatatgcgatccacagttctggagaggg
ttact

gaattcttttggcaggaaaaatatttcaaatgagtgaaaattagtgtaaa
caaggggagcttacaaaaatggagacacccaagtttattcatcttgcaga
aaactgttctaggtctgtctctttgatctgaagaaatttattttttgagt
ccaaaaggacatttgtgttgtttttaaaacaaaagcccaagtgttcgatt
taccaaatgaaaactcaagagctggatgctgtgatgaaagtctgccagct
caaagaagcagagaaagcatcctgattcctactccactgtcatcccagaa
ggagaaaatcctttttctttctccacattgtcttaaatacccttccaccc
aaaggctcacctttttttccctgggtttttttaggctcactccctgtcaa
ttagttgcttgctccacctcttgacctatgtttgacgttatttagctttt
gtttacaagagcttttgggttaatggtgtgtgcttgggctgagccacacc
acaacaggaaacagttttttccagatcacagtcttaaggttcacagtgta
atcaaatatcctgcaacacatttgaggattgccttctgtgctggggactc
tgcattttatgattttagattctattgtttcccaacaactactccaggac
ttagtggtataaaacagtatttgtctcatgtatctcttgtctgtgttggg
tccacgacaaaacctattcttgtttgttagcaccatttatattggcagag
tatacttatggaaaaatgaagttggaagaaaaagaaatgagaacccaaaa
ttttggagttatgtcactcattactcactatataagaactgataaaatgt
aatatctcatcaccagtggtatataacaaaagagctttataacttggtta
ataacaaaaattctcccttttcatttccacaaaaacatgagagcaatgat
ttggtttataatttcaggggactgaagaaaagattgtttcgtataattag
tggagtgctgatattacgtcctactctactctaaaaatatgaaacagata
tagtcatagtacatattaactatttttgatttcttcagtacaagctgggg
gtgcacagaagaagagttgactggtggctataaaatctaaattggcaaga
attacaatcttgttatgaaactttccttttcgtgaatggagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42629514_42630623
seq2: B6Ng01-249A13.b_46_1150

seq1  GAATTCTTACAAGCTTAATTATTGAAAGAGTAGCTCTCGTAGTTAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAGCTTAATTATTGAAAGAGTAGCTCTCGTAGTTAAGTTT  50

seq1  CCTATTGCTATGATAAAATACATGACCAAAGCAACTTCAAGAGGAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCTATGATAAAATACATGACCAAAGCAACTTCAAGAGGAAAGGG  100

seq1  TTTATATTATCTTATATGTCTCAGGTCATACTTCATCACTAAGGAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATCTTATATGTCTCAGGTCATACTTCATCACTAAGGAAAGTC  150

seq1  AGGGTATAACTCAAGGCGGGAATCTGGAAGCAATAGCTAAAGCAGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAACTCAAGGCGGGAATCTGGAAGCAATAGCTAAAGCAGGATCC  200

seq1  ATGAAGTAACCCAGTTTACTGTTTAGCTCCCTATGCGTTGTTTGGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTAACCCAGTTTACTGTTTAGCTCCCTATGCGTTGTTTGGCTGGC  250

seq1  CTGCTTTCTTTTGTCTTCTAGGGCTTTGGGTCCAAAAGTGGCACCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTTTTGTCTTCTAGGGCTTTGGGTCCAAAAGTGGCACCTCTCC  300

seq1  CCTGTGAACTGGGCCCATCACAGCAATCATTTTTGTTATTAATCAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAACTGGGCCCATCACAGCAATCATTTTTGTTATTAATCAAGACT  350

seq1  ACACTTCATCACAGTCAATCTATGGAAAACTTTTCTCCCCTCTTCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCATCACAGTCAATCTATGGAAAACTTTTCTCCCCTCTTCCCAGT  400

seq1  TAGATCTAGGTTTGTATCAAGTTGAAAAAAAAAACAGTCAGAAGCTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAGGTTTGTATCAAGTTGAAAAAAAAAACAGTCAGAAGCTAACC  450

seq1  AATGCAGAAATAACTGCCAAGGAAGAGGGAAAAGATTTGTTTAAAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAAATAACTGCCAAGGAAGAGGGAAAAGATTTGTTTAAAGCATA  500

seq1  TTATAGTAAGTTGTATTGTTTTAAATCTCTAGTTTCATGTCTCTGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAAGTTGTATTGTTTTAAATCTCTAGTTTCATGTCTCTGATGTA  550

seq1  GCTGTGAAATTCTCATGCCCTGATGAGAGTTAAACATATTCAAGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAATTCTCATGCCCTGATGAGAGTTAAACATATTCAAGAAAGAA  600

seq1  GGGAGATCAACATACCAATCTTTCCAAGGCAAATGTAGAGAATTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATCAACATACCAATCTTTCCAAGGCAAATGTAGAGAATTCTAACT  650

seq1  CTACCAATGATTAAAACAACTAGAAACATACAGAAGGTGCTTTCTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATGATTAAAACAACTAGAAACATACAGAAGGTGCTTTCTGTAAC  700

seq1  ATATCAAAGTGAACTCCTATTCAAATTATTTTCATTTAATTGGTTGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGTGAACTCCTATTCAAATTATTTTCATTTAATTGGTTGGGTC  750

seq1  TGAAGAGATTGTCTTGGAATTAAAATATATATATATATAAAACAGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATTGTCTTGGAATTAAAATATATATATATATAAAACAGCTAGA  800

seq1  GATATTGCTCACTATCACTCATAGAATACGCTCAAAGAGGACCCATTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCTCACTATCACTCATAGAATACGCTCAAAGAGGACCCATTCCC  850

seq1  ATGACAGCTCACAACCATCTGGAGCTCCAGTTCCAGGGGCTTTAACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTCACAACCATCTGGAGCTCCAGTTCCAGGGGCTTTAACAACT  900

seq1  TCTTTTTGCCTAGTTGGACAATAAGCACAAATATGTTGCCCAGGAATGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCCTAGTTGGACAATAAGCACAAATATGTTGCCCAGGAATGGA  950

seq1  AAACACTCATACCCATAAAATAAAAATAATCTTTTCAAAAATAGCATCTG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACACTCATACCCATAAAATAAAAATAATCTTTTC-AAAATAGCATCTG  999

seq1  TGAAAGGTATCTTATATTTATAGGAGAATAATATTGTTTTGGAGAAAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTATCTTATATTTATAGGAGAATAATATTGTTTTGGAGAAAAGC  1049

seq1  CATTTTATGTTTTACCCCATCAATATAATATGCGAT-CACAGTTTCTTGG  1099
      ||||||||||||   |||||| |||| ||||||||| |||||||   |||
seq2  CATTTTATGTTT--ACCCATC-ATATTATATGCGATCCACAGTT--CTGG  1094

seq1  AGAGTGTTACT  1110
      |||| ||||||
seq2  AGAGGGTTACT  1105


seq1: chr17_42668097_42669310
seq2: B6Ng01-249A13.g_67_1261 (reverse)

seq1  TTCT-TCCATTCTAGAAAAAGGAAATTTTCATTACAAAGATTGTATATTC  49
      |||| ||||||| |  ||||||||| |||||| || ||||||||| ||||
seq2  TTCTCTCCATTC-ACGAAAAGGAAAGTTTCATAAC-AAGATTGTA-ATTC  47

seq1  TTGCCAATTTATGAATTTTTATTAGCCCACCAACTCACCTCCTCCTCTGT  99
      ||||||||||| ||  ||||| ||| ||||| | ||| ||| || |||||
seq2  TTGCCAATTTA-GA--TTTTA-TAG-CCACC-AGTCAACTCTTCTTCTGT  91

seq1  GCA-CCCCAGCTTTGGTACTGAAGAAATCAAAAATAGTTTATATGGTAAC  148
      ||| |||||||||  |||||||||||||||||||||||| |||||   ||
seq2  GCACCCCCAGCTT--GTACTGAAGAAATCAAAAATAGTTAATATG--TAC  137

seq1  TATTGAACCTATTATCTTGTTTCATATTTTTAGAGTTAGGAGGTAAGGAC  198
      || |||  ||| |||| |||||||||||||||||||    ||   |||||
seq2  TA-TGA--CTA-TATC-TGTTTCATATTTTTAGAGT----AGAGTAGGAC  178

seq1  GTAATATCAGCACTCCACTAATTATACGAAACAATC-TTTCTTCAGTCCC  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTAATATCAGCACTCCACTAATTATACGAAACAATCTTTTCTTCAGTCCC  228

seq1  CTGAAATTATAAACCAAATCATTGCTCTCATTGTTTTGTGGAAATGAAAA  297
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CTGAAATTATAAACCAAATCATTGCTCTCATGTTTTTGTGGAAATGAAAA  278

seq1  GGGAGAATTTTTGTTATTAACCAAGTTATAAAGCTCTTTTGTTATATACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATTTTTGTTATTAACCAAGTTATAAAGCTCTTTTGTTATATACC  328

seq1  ACTGGTGATGAGATATTACATTTTATCAGTTCTTATATAGTGAGTAATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGATGAGATATTACATTTTATCAGTTCTTATATAGTGAGTAATGA  378

seq1  GTGACATAACTCCAAAATTTTGGGTTCTCATTTCTTTTTCTTCCAACTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATAACTCCAAAATTTTGGGTTCTCATTTCTTTTTCTTCCAACTTC  428

seq1  ATTTTTCCATAAGTATACTCTGCCAATATAAATGGTGCTAACAAACAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCATAAGTATACTCTGCCAATATAAATGGTGCTAACAAACAAGA  478

seq1  ATAGGTTTTGTCGTGGACCCAACACAGACAAGAGATACATGAGACAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTGTCGTGGACCCAACACAGACAAGAGATACATGAGACAAATA  528

seq1  CTGTTTTATACCACTAAGTCCTGGAGTAGTTGTTGGGAAACAATAGAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATACCACTAAGTCCTGGAGTAGTTGTTGGGAAACAATAGAATC  578

seq1  TAAAATCATAAAATGCAGAGTCCCCAGCACAGAAGGCAATCCTCAAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATAAAATGCAGAGTCCCCAGCACAGAAGGCAATCCTCAAATGT  628

seq1  GTTGCAGGATATTTGATTACACTGTGAACCTTAAGACTGTGATCTGGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGATATTTGATTACACTGTGAACCTTAAGACTGTGATCTGGAAA  678

seq1  AAACTGTTTCCTGTTGTGGTGTGGCTCAGCCCAAGCACACACCATTAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTCCTGTTGTGGTGTGGCTCAGCCCAAGCACACACCATTAACC  728

seq1  CAAAAGCTCTTGTAAACAAAAGCTAAATAACGTCAAACATAGGTCAAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTCTTGTAAACAAAAGCTAAATAACGTCAAACATAGGTCAAGAG  778

seq1  GTGGAGCAAGCAACTAATTGACAGGGAGTGAGCCTAAAAAAACCCAGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCAAGCAACTAATTGACAGGGAGTGAGCCTAAAAAAACCCAGGGA  828

seq1  AAAAAAGGTGAGCCTTTGGGTGGAAGGGTATTTAAGACAATGTGGAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTGAGCCTTTGGGTGGAAGGGTATTTAAGACAATGTGGAGAAA  878

seq1  GAAAAAGGATTTTCTCCTTCTGGGATGACAGTGGAGTAGGAATCAGGATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGATTTTCTCCTTCTGGGATGACAGTGGAGTAGGAATCAGGATG  928

seq1  CTTTCTCTGCTTCTTTGAGCTGGCAGACTTTCATCACAGCATCCAGCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTTCTTTGAGCTGGCAGACTTTCATCACAGCATCCAGCTCT  978

seq1  TGAGTTTTCATTTGGTAAATCGAACACTTGGGCTTTTGTTTTAAAAACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTCATTTGGTAAATCGAACACTTGGGCTTTTGTTTTAAAAACAA  1028

seq1  CACAAATGTCCTTTTGGACTCAAAAAATAAATTTCTTCAGATCAAAGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTCCTTTTGGACTCAAAAAATAAATTTCTTCAGATCAAAGAGA  1078

seq1  CAGACCTAGAACAGTTTTCTGCAAGATGAATAAACTTGGGTGTCTCCATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTAGAACAGTTTTCTGCAAGATGAATAAACTTGGGTGTCTCCATT  1128

seq1  TTTGTAAGCTCCCCTTGTTTACACTAATTTTCACTCATTTGAAATATTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCTCCCCTTGTTTACACTAATTTTCACTCATTTGAAATATTTT  1178

seq1  TCCTGCCAAAAGAATTC  1214
      |||||||||||||||||
seq2  TCCTGCCAAAAGAATTC  1195


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