BAC Information

Click to search

BAC

Clone NameB6Ng01-249N17
Chromosome17 (Build37)
Map Location 75,821,244 - 75,955,954
singlet/doubletdoublet
Overlap geneRasgrp3, 2810405J04Rik
Upstream geneSlc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
Downstream geneLOC668787, LOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249N17.bB6Ng01-249N17.g
ACCGA057567GA057568
length528419
definitionB6Ng01-249N17.b B6Ng01-249N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,821,244 - 75,821,771)(75,955,530 - 75,955,954)
sequence
gaattctagcccctgagctcatgtagccctgtgcaatggttggtcttgct
catcaatttgctgggagttagaatcacctggaaggcgtttccagtggtct
cagtccaagaggtttgaacaacttcgtgggttggagtcccgggcaataga
aaggccaaaagaaaaaaaaaagtgggtctggaaccatatttactttcctc
tgtttcctgacacaatatgtgtctgcagcacaactcgccactatactccc
attcctaccaccataataactgtactccctcaaaccatgagccaaaggaa
cccttccttcagtttctttgcccatatattttgtcacagaaatgagggaa
acaatctactactgtgtgggttaaaacggcctgggctgctgggtgaggtg
ggattcaggaagtttgactgtgcgcaccgcactcagccactgagtgagtg
tcaggctatgagaagccacaggatcctgctctgggggtggggaagtgcag
tctgaggtccctgcagactgctggagct

ctcctgtgtggagcattgacgttgcgcacagccttggggacagagtagaa
agtgaactgagcggtacagcggcataccagtagacagaagaacacactgg
agctgcccatgccaacatgaggaggacacttctgttggtagaggaaaaca
aactaagttgtcttagtcttggagactgagcaagaagcatctgtcaggca
gggaagaaggaagaggattccagtcagaggaaacaatctgatatgaaagt
atagctgtggttggcagcagctatcaggtaaaccaagaaacaaggtaggt
acatcatcccttaaaagtcttccagtttacctcactctaactttcaaaag
catcactgattttcttctgtgagtgtgtgtgcgtgtgtgtgtgtgtatgt
gtgtgtgtgtttgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75821244_75821771
seq2: B6Ng01-249N17.b_47_574

seq1  GAATTCTAGCCCCTGAGCTCATGTAGCCCTGTGCAATGGTTGGTCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCCCTGAGCTCATGTAGCCCTGTGCAATGGTTGGTCTTGCT  50

seq1  CATCAATTTGCTGGGAGTTAGAATCACCTGGAAGGCGTTTCCAGTGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTTGCTGGGAGTTAGAATCACCTGGAAGGCGTTTCCAGTGGTCT  100

seq1  CAGTCCAAGAGGTTTGAACAACTTCGTGGGTTGGAGTCCCGGGCAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGAGGTTTGAACAACTTCGTGGGTTGGAGTCCCGGGCAATAGA  150

seq1  AAGGCCAAAAGAAAAAAAAAAGTGGGTCTGGAACCATATTTACTTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAAAGAAAAAAAAAAGTGGGTCTGGAACCATATTTACTTTCCTC  200

seq1  TGTTTCCTGACACAATATGTGTCTGCAGCACAACTCGCCACTATACTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGACACAATATGTGTCTGCAGCACAACTCGCCACTATACTCCC  250

seq1  ATTCCTACCACCATAATAACTGTACTCCCTCAAACCATGAGCCAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTACCACCATAATAACTGTACTCCCTCAAACCATGAGCCAAAGGAA  300

seq1  CCCTTCCTTCAGTTTCTTTGCCCATATATTTTGTCACAGAAATGAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCAGTTTCTTTGCCCATATATTTTGTCACAGAAATGAGGGAA  350

seq1  ACAATCTACTACTGTGTGGGTTAAAACGGCCTGGGCTGCTGGGTGAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTACTACTGTGTGGGTTAAAACGGCCTGGGCTGCTGGGTGAGGTG  400

seq1  GGATTCAGGAAGTTTGACTGTGCGCACCGCACTCAGCCACTGAGTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGAAGTTTGACTGTGCGCACCGCACTCAGCCACTGAGTGAGTG  450

seq1  TCAGGCTATGAGAAGCCACAGGATCCTGCTCTGGGGGTGGGGAAGTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTATGAGAAGCCACAGGATCCTGCTCTGGGGGTGGGGAAGTGCAG  500

seq1  TCTGAGGTCCCTGCAGACTGCTGGAGCT  528
      ||||||||||||||||||||||||||||
seq2  TCTGAGGTCCCTGCAGACTGCTGGAGCT  528


seq1: chr17_75955530_75955954
seq2: B6Ng01-249N17.g_68_492 (reverse)

seq1  CACACACAAACACACACACACATACACACACACACACGCACACACACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAACACACACACACATACACACACACACACGCACACACACTCA  50

seq1  CAGAAGAAAATCAGTGATGCTTTTGAAAGTTAGAGTGAGGTAAACTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAATCAGTGATGCTTTTGAAAGTTAGAGTGAGGTAAACTGGAA  100

seq1  GACTTTTAAGGGATGATGTACCTACCTTGTTTCTTGGTTTACCTGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAAGGGATGATGTACCTACCTTGTTTCTTGGTTTACCTGATAGC  150

seq1  TGCTGCCAACCACAGCTATACTTTCATATCAGATTGTTTCCTCTGACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAACCACAGCTATACTTTCATATCAGATTGTTTCCTCTGACTGG  200

seq1  AATCCTCTTCCTTCTTCCCTGCCTGACAGATGCTTCTTGCTCAGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTCCTTCTTCCCTGCCTGACAGATGCTTCTTGCTCAGTCTCCA  250

seq1  AGACTAAGACAACTTAGTTTGTTTTCCTCTACCAACAGAAGTGTCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGACAACTTAGTTTGTTTTCCTCTACCAACAGAAGTGTCCTCCT  300

seq1  CATGTTGGCATGGGCAGCTCCAGTGTGTTCTTCTGTCTACTGGTATGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGCATGGGCAGCTCCAGTGTGTTCTTCTGTCTACTGGTATGCCG  350

seq1  CTGTACCGCTCAGTTCACTTTCTACTCTGTCCCCAAGGCTGTGCGCAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCGCTCAGTTCACTTTCTACTCTGTCCCCAAGGCTGTGCGCAACG  400

seq1  TCAATGCTCCACACAGGAGGAATTC  425
      |||||||||||||||||||||||||
seq2  TCAATGCTCCACACAGGAGGAATTC  425


| Home | SequenceCutter | Blast | Download |