BAC Information

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BAC

Clone NameB6Ng01-250K04
Chromosome17 (Build37)
Map Location 35,103,297 - 35,282,936
singlet/doubletdoublet
Overlap geneHspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3
Upstream geneVps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b
Downstream geneBat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250K04.bB6Ng01-250K04.g
ACCGA058128GA058129
length8261,077
definitionB6Ng01-250K04.b B6Ng01-250K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,103,297 - 35,104,119)(35,281,893 - 35,282,936)
sequence
gaattcatttggcttacacttccacattgtagtccatcatcgaaggaagt
caggacaggaactcaggggaggaaacctagaggtagaagccaatgcagag
gccatggaaggatgctgttactggcttgcttggcctactttcttatagaa
cccaccaccagcccaagaatagtctcatccacaatgggctggtcccttcc
ctatcaatctaattaagaaaatgctttacagcaaatcccatggaagaact
cactcagttgaggttccctcctttcagatcactctagcttgtgtcaaagt
tgccataaaattatccggctcaagccggacggtggtggtgcacaccttta
atcccagcacttgggaggcagaggcaggcggatttttgagttcgaggcca
gcctggtctacagagtgagttccaggacagccagggctatacagagaaac
cctgtctcgaaaaaaccaacaaaacaaaacaaaacaaaaaaaacaaaaaa
accctatccagctcagtaaggattaataaagcaacatacaagaggtcccg
aaaaagtgtctactctgttacaccacaccgatgttgagatcagaggagtg
ttcactggaatacttaaaacatgggcaacaaaaactgtgaagtggcccag
caagatgactcagtaggtacaagtgtttgtacacaaacctgacttcctga
gttcaataactccagagcccagtgaaaagaaaactgactccccaagttat
ccctctaacctgtacatgtaccaaacccaccctccccccccactctctct
ctctcttctctctctctctctctctt
gaattctttgctcccaagccccttttctcacagccatctactccatatta
ttcggcttctcaaacagtacctgaggttcaggggaagttctttctgctcc
ctgaacttccatcggctcttcaggaagtgtctgtgaaattggtcaaagaa
atataaaggggatgtggtgggaggggctgctccaggccatctcttcagtt
tctttacatcctgacaccaccccctattggatcccttacctgaggaggat
caccaaccctacgaacatatctgaggatggcgtcgggacccacaggcatg
tgctccaagaccacctgaagcctcagtcccatcatggttgtcagccagct
caccaaggatggattcaccccgcgagacatgcggcgctgagggccagaaa
acagattgaccatataactctcaagctacttttgcaatctattacatcca
gggcaacaggtagagtatttggagaagaaaattaaaactcacaggacata
acaaaaaagccagagacctagaattgggtggtacttacaattcgaccatt
gatgacagcagcaagctccatttgctgtccccccaagcagtggaggttca
gggccaagcattcaaacaggccctggttacacagctccagcaaccgggct
ccaaatccactgtctgcggggaggatgtgagagagcacatgattctggca
gtcgtgcgtggacaggacacactacctgtgatttggctggcccccaagcc
tgacctgtacagtgcagcacatgagcagcaatgctgttaaactgcttctt
ggagaaattctaaatttgtccggatgatatccacaccctggctgaaacct
gtaccaaaagacttgagacaagacacaccaaagaactcccgttttcatta
ctttaagatcttaggaagaagaaagcagggcagacagaactaacagatca
cacacccaccctccccaccccaaacccttggactggaaggaaacagaaca
aagacaacttacataaacttctcccctttacatacctccttcccagccca
agtgatcagatgtggtgggggttcgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35103297_35104119
seq2: B6Ng01-250K04.b_45_869

seq1  GAATTCATTTGGCTTACACTTCCACATTGTAGTCCATCATCGAAGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGCTTACACTTCCACATTGTAGTCCATCATCGAAGGAAGT  50

seq1  CAGGACAGGAACTCAGGGGAGGAAACCTAGAGGTAGAAGCCAATGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGAACTCAGGGGAGGAAACCTAGAGGTAGAAGCCAATGCAGAG  100

seq1  GCCATGGAAGGATGCTGTTACTGGCTTGCTTGGCCTACTTTCTTATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAAGGATGCTGTTACTGGCTTGCTTGGCCTACTTTCTTATAGAA  150

seq1  CCCACCACCAGCCCAAGAATAGTCTCATCCACAATGGGCTGGTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCAGCCCAAGAATAGTCTCATCCACAATGGGCTGGTCCCTTCC  200

seq1  CTATCAATCTAATTAAGAAAATGCTTTACAGCAAATCCCATGGAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATCTAATTAAGAAAATGCTTTACAGCAAATCCCATGGAAGAACT  250

seq1  CACTCAGTTGAGGTTCCCTCCTTTCAGATCACTCTAGCTTGTGTCAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTTGAGGTTCCCTCCTTTCAGATCACTCTAGCTTGTGTCAAAGT  300

seq1  TGCCATAAAATTATCCGGCTCAAGCCGGACGGTGGTGGTGCACACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAAATTATCCGGCTCAAGCCGGACGGTGGTGGTGCACACCTTTA  350

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCA  400

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450

seq1  CCTGTCTCGAAAAAACCAACAAAACAAAACAAAACAAAAAAAACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAAACCAACAAAACAAAACAAAACAAAAAAAACAAAAAA  500

seq1  ACCCTATCCAGCTCAGTAAGGATTAATAAAGCAACATACAAGAGGTCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCCAGCTCAGTAAGGATTAATAAAGCAACATACAAGAGGTCCCG  550

seq1  AAAAAGTGTCTACTCTGTTACACCACACCGATGTTGAGATCAGAGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTCTACTCTGTTACACCACACCGATGTTGAGATCAGAGGAGTG  600

seq1  TTCACTGGAATACTTAAAACATGGGCAACAAAAACTGTGAAGTGGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGAATACTTAAAACATGGGCAACAAAAACTGTGAAGTGGCCCAG  650

seq1  CAAGATGACTCAGTAGGTACAAGTGTTTGTACACAAACCTGACTTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGACTCAGTAGGTACAAGTGTTTGTACACAAACCTGACTTCCTGA  700

seq1  GTTCAAT-ACTCCAGAGCCCAGTG-AAAGAAAACTGACTCCCCAAGTTAT  748
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCAATAACTCCAGAGCCCAGTGAAAAGAAAACTGACTCCCCAAGTTAT  750

seq1  -CCTCTAACCTGTACATGTACCAAACCCACCCTCCCCCCCCACTCTCTCT  797
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAACCTGTACATGTACCAAACCCACCCTCCCCCCCCACTCTCTCT  800

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCT  823
      |||||| |||||||||||||||||||
seq2  CTCTCT-TCTCTCTCTCTCTCTCTCT  825

seq1: chr17_35281893_35282936
seq2: B6Ng01-250K04.g_71_1147 (reverse)

seq1  GGCGA---CCCA-CACA-CTGATCAC-TGGGCT-GGAAG--AGTATGTAA  41
      |||||   |||| |||| |||||||| |||||| |||||   ||||||||
seq2  GGCGAACCCCCACCACATCTGATCACTTGGGCTGGGAAGGAGGTATGTAA  50

seq1  --GGGAG-AGTTT-TGTAAG-TGTCCTTTGTCTGTTTCCTTCCAGTC--A  84
        ||||| ||||| |||||| |||| ||  |||||||||||||||||  |
seq2  AGGGGAGAAGTTTATGTAAGTTGTCTTTGTTCTGTTTCCTTCCAGTCCAA  100

seq1  GGGTTT-GGGTTGGGTGTGTGTGTGTGTG-TCTGTCTG-TCTGTCTG-CC  130
      |||||| |||| ||| | ||| ||||||| |||||  | |||||||| ||
seq2  GGGTTTGGGGTGGGGAGGGTGGGTGTGTGATCTGTTAGTTCTGTCTGCCC  150

seq1  TGC-TTCCTCTTC--TAGATCTTAAAGTACTGAAA--CGGAGTTC-TTGG  174
      ||| ||| |||||   ||||||||||||| |||||   ||||||| ||||
seq2  TGCTTTCTTCTTCCTAAGATCTTAAAGTAATGAAAACGGGAGTTCTTTGG  200

seq1  TGTGTCTTGTCTC-AGTC-TTTGGTACAGG-TTCAGCCA-GGTGTGGATA  220
      ||||||||||||| |||| ||||||||||| |||||||| ||||||||||
seq2  TGTGTCTTGTCTCAAGTCTTTTGGTACAGGTTTCAGCCAGGGTGTGGATA  250

seq1  TCATCCGGACAAATTTAGAATTTCTCCAAG-AGCAGTTTAACAGCATTGC  269
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCATCCGGACAAATTTAGAATTTCTCCAAGAAGCAGTTTAACAGCATTGC  300

seq1  TGCTCATGTGCTGCACTGTACAGGTCAGGC-TGGGGGCCAGCC-AATCAC  317
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TGCTCATGTGCTGCACTGTACAGGTCAGGCTTGGGGGCCAGCCAAATCAC  350

seq1  AGGTAGTGTGTCCTGTCCACGCACGACTGCCAGAATCATGTGCTCTCTCA  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGTGTCCTGTCCACGCACGACTGCCAGAATCATGTGCTCTCTCA  400

seq1  CATCCTCCCCGCAGACAGTGGATTTGGAGCCCGGTTGCTGGAGCTGTGTA  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCCGCAGACAGTGGATTTGGAGCCCGGTTGCTGGAGCTGTGTA  450

seq1  ACCAGGGCCTGTTTGAATGCTTGGCCCTGAACCTCCACTGCTTGGGGGGA  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCCTGTTTGAATGCTTGGCCCTGAACCTCCACTGCTTGGGGGGA  500

seq1  CAGCAAATGGAGCTTGCTGCTGTCATCAATGGTCGAATTGTAAGTACCAC  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGGAGCTTGCTGCTGTCATCAATGGTCGAATTGTAAGTACCAC  550

seq1  CCAATTCTAGGTCTCTGGCTTTTTTGTTATGTCCTGTGAGTTTTAATTTT  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTAGGTCTCTGGCTTTTTTGTTATGTCCTGTGAGTTTTAATTTT  600

seq1  CTTCTCCAAATACTCTACCTGTTGCCCTGGATGTAATAGATTGCAAAAGT  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAAATACTCTACCTGTTGCCCTGGATGTAATAGATTGCAAAAGT  650

seq1  AGCTTGAGAGTTATATGGTCAATCTGTTTTCTGGCCCTCAGCGCCGCATG  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGAGTTATATGGTCAATCTGTTTTCTGGCCCTCAGCGCCGCATG  700

seq1  TCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGG  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGG  750

seq1  ACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTGTGGGTCCCGACGCCA  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTGTGGGTCCCGACGCCA  800

seq1  TCCTCAGATATGTTCGTAGGGTTGGTGATCCTCCTCAGGTAAGGGATCCA  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGATATGTTCGTAGGGTTGGTGATCCTCCTCAGGTAAGGGATCCA  850

seq1  ATAGGGGGTGGTGTCAGGATGTAAAGAAACTGAAGAGATGGCCTGGAGCA  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGGTGGTGTCAGGATGTAAAGAAACTGAAGAGATGGCCTGGAGCA  900

seq1  GCCCCTCCCACCACATCCCCTTTATATTTCTTTGACCAATTTCACAGACA  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCACCACATCCCCTTTATATTTCTTTGACCAATTTCACAGACA  950

seq1  CTTCCTGAAGAGCCGATGGAAGTTCAGGGAGCAGAAAGAACTTCCCCTGA  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAGAGCCGATGGAAGTTCAGGGAGCAGAAAGAACTTCCCCTGA  1000

seq1  ACCTCAGGTACTGTTTGAGAAGCCGAATAATATGGAGTAGATGGCTGTGA  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGTACTGTTTGAGAAGCCGAATAATATGGAGTAGATGGCTGTGA  1050

seq1  GAAAAGGGGCTTGGGAGCAAAGAATTC  1044
      |||||||||||||||||||||||||||
seq2  GAAAAGGGGCTTGGGAGCAAAGAATTC  1077