BAC Information

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BAC

Clone NameB6Ng01-251J23
Chromosome17 (Build37)
Map Location 47,221,776 - 47,329,231
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J23.bB6Ng01-251J23.g
ACCGA058831GA058832
length9411,130
definitionB6Ng01-251J23.b B6Ng01-251J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,328,297 - 47,329,231)(47,221,776 - 47,222,742)
sequence
gaattcactctgcactggcttaccgtgtggtgtctgtgggctcagctgca
atggaggctcacaggggcccatagtaggggccatacccttaggaaggtag
tgcacggtgacacctagtaactcaaggagaggaggctgtgttctcacaaa
atcatgtgacaactgggatgagggaaagacagacttcagaagaccccgac
atcaaagaggcagaagctaagggcatcccatgatctccagggcctttagg
aaacaccatccagatgtgggaactacagttctgaatgtctcctaaatgtg
gatttcagactatcataccatccccataactactgcctatgtgtcagagt
gccaaattccagaaggccatggtccctcaatccaaacagtcagacacaac
gacctcaagagacctgggtcctaagtgggaccttgggaaacccagccagg
tggccagagaggaggagtggggaccaggcagcagggactctgtggttcat
ggaacgcaccagaaaaaagcacggccaggacaaagtggttctcagagagg
caccagaggaggcaggcacaggtcaggaggtagaggtgggttttgtttta
tttttgaggaggagcacctgtgggcacagatagggaagcacaaaccaggc
caatgaacagtaactggccacagtttttgaataaattaccaccacaaacc
agggagaagaccaccagagaactacccagcttctgtcatgcatgatctcc
aaccctcaagtccatagcacttcctgaaaatacagcggctaaaaaaatgt
cttgtctgaaaaagccttaaaatggtcctactgaggaaactgtccttgtt
ccccagtttacacacaaaggaaactggatttgagaggcatatttcagaaa
ctgtcttgtatggagtttggagagatggcggtcggtaagct
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttattgcttacatcttcaggagccagagtgcaagaagcaag
agagagagaaaacgaaaccccgtccctattaaggagaattctccttcgcc
taggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagcacatggagtagagaaccaccctcggcatatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacaatacagctccttctcctcctgtt
cctccttttcaccctcctcttattcttcctcctcctcctcctcttctttc
tccttcaagacaaggtttctctgtttagccctggcctgtcctataactct
ctttgcagaccaggttggcctcaagctcacagagatctacctgcctctgc
ctccgcctcctgcttcttaatgctcgtatctatttactaattctgtcagc
tgtggctttctggatgtttctatgaactgctttcttatgatgtgtctcat
aacacctcgagtgagtgccaggcatttgcacatttccttgtttgctctgt
agacgttggatgtgatgtagcccttgtgagtgtgtctgtgcacttgtgaa
catctgtgcatttgtgtggggatggcagccagactgacgttgaccttggg
tgcctttcctctttctctccccaccttttgaagctcaaggacagttagag
ttcaaggaaacaacagggcaggagacctgtaattctctgtagtcattcca
tgggaaggggaagacgcaaagtgtgtccttcttggagttctggacctcag
aagactaccaggcttcagcacttggaagggtaagcagccatgggcagaag
ggtgctaggttcggaaccttcagaagactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47328297_47329231
seq2: B6Ng01-251J23.b_45_985 (reverse)

seq1  AGCTTACCGACCGCCATCTCTCC-AACTCCATACAAGACAG-TTCTG-AA  47
      ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
seq2  AGCTTACCGACCGCCATCTCTCCAAACTCCATACAAGACAGTTTCTGAAA  50

seq1  TATGCCTCTCAAATCCAGTTTCC-TTGTGTGTAAACTGGGG-ACAAGGAC  95
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TATGCCTCTCAAATCCAGTTTCCTTTGTGTGTAAACTGGGGAACAAGGAC  100

seq1  AGTTTCCTCAGTAGGACCATTTTAAGGCTTTTTCAGACAAGACA-TTTTT  144
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTTCCTCAGTAGGACCATTTTAAGGCTTTTTCAGACAAGACATTTTTT  150

seq1  TAGCCGCTGTATTTTCAGGAAGTGCTATGGACTTGAGGGTTGGAGATCAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGCTGTATTTTCAGGAAGTGCTATGGACTTGAGGGTTGGAGATCAT  200

seq1  GCATGACAGAAGCTGGGTAGTTCTCTGGTGGTCTTCTCCCTGGTTTGTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACAGAAGCTGGGTAGTTCTCTGGTGGTCTTCTCCCTGGTTTGTGG  250

seq1  TGGTAATTTATTCAAAAACTGTGGCCAGTTACTGTTCATTGGCCTGGTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTATTCAAAAACTGTGGCCAGTTACTGTTCATTGGCCTGGTTT  300

seq1  GTGCTTCCCTATCTGTGCCCACAGGTGCTCCTCCTCAAAAATAAAACAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCCTATCTGTGCCCACAGGTGCTCCTCCTCAAAAATAAAACAAA  350

seq1  ACCCACCTCTACCTCCTGACCTGTGCCTGCCTCCTCTGGTGCCTCTCTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTCTACCTCCTGACCTGTGCCTGCCTCCTCTGGTGCCTCTCTGA  400

seq1  GAACCACTTTGTCCTGGCCGTGCTTTTTTCTGGTGCGTTCCATGAACCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTTTGTCCTGGCCGTGCTTTTTTCTGGTGCGTTCCATGAACCAC  450

seq1  AGAGTCCCTGCTGCCTGGTCCCCACTCCTCCTCTCTGGCCACCTGGCTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCTGCTGCCTGGTCCCCACTCCTCCTCTCTGGCCACCTGGCTGG  500

seq1  GTTTCCCAAGGTCCCACTTAGGACCCAGGTCTCTTGAGGTCGTTGTGTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAAGGTCCCACTTAGGACCCAGGTCTCTTGAGGTCGTTGTGTCT  550

seq1  GACTGTTTGGATTGAGGGACCATGGCCTTCTGGAATTTGGCACTCTGACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTGGATTGAGGGACCATGGCCTTCTGGAATTTGGCACTCTGACA  600

seq1  CATAGGCAGTAGTTATGGGGATGGTATGATAGTCTGAAATCCACATTTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCAGTAGTTATGGGGATGGTATGATAGTCTGAAATCCACATTTAG  650

seq1  GAGACATTCAGAACTGTAGTTCCCACATCTGGATGGTGTTTCCTAAAGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTCAGAACTGTAGTTCCCACATCTGGATGGTGTTTCCTAAAGGC  700

seq1  CCTGGAGATCATGGGATGCCCTTAGCTTCTGCCTCTTTGATGTCGGGGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGATCATGGGATGCCCTTAGCTTCTGCCTCTTTGATGTCGGGGTC  750

seq1  TTCTGAAGTCTGTCTTTCCCTCATCCCAGTTGTCACATGATTTTGTGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCTGTCTTTCCCTCATCCCAGTTGTCACATGATTTTGTGAGA  800

seq1  ACACAGCCTCCTCTCCTTGAGTTACTAGGTGTCACCGTGCACTACCTTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTCCTCTCCTTGAGTTACTAGGTGTCACCGTGCACTACCTTCC  850

seq1  TAAGGGTATGGCCCCTACTATGGGCCCCTGTGAGCCTCCATTGCAGCTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTATGGCCCCTACTATGGGCCCCTGTGAGCCTCCATTGCAGCTGA  900

seq1  GCCCACAGACACCACACGGTAAGCCAGTGCAGAGTGAATTC  935
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGACACCACACGGTAAGCCAGTGCAGAGTGAATTC  941

seq1: chr17_47221776_47222742
seq2: B6Ng01-251J23.g_222_1195

seq1  CTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAA  50

seq1  GCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGAG  100

seq1  AGAAAACGAAACCCCGTCCCTATTAAGGAGAATTCTCCTTCGCCTAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACGAAACCCCGTCCCTATTAAGGAGAATTCTCCTTCGCCTAGGAC  150

seq1  GTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGG  200

seq1  GAAGGCAGAGCACATGGAGTAGAGAACCACCCTCGGCATATGCGCAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGCACATGGAGTAGAGAACCACCCTCGGCATATGCGCAGATT  250

seq1  ATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGA  300

seq1  ATGTGGGCGCGGCTCCCAACAATACAGCTCCTTCTCCTCCTGTTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCGCGGCTCCCAACAATACAGCTCCTTCTCCTCCTGTTCCTCCT  350

seq1  TTTCACCCTCCTCTTATTCTTCCTCCTCCTCCTCCTCTTCTTTCTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCTCCTCTTATTCTTCCTCCTCCTCCTCCTCTTCTTTCTCCTTC  400

seq1  AAGACAAGGTTTCTCTGTTTAGCCCTGGCCTGTCCTATAACTCTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGGTTTCTCTGTTTAGCCCTGGCCTGTCCTATAACTCTCTTTGC  450

seq1  AGACCAGGTTGGCCTCAAGCTCACAGAGATCTACCTGCCTCTGCCTCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTTGGCCTCAAGCTCACAGAGATCTACCTGCCTCTGCCTCCGC  500

seq1  CTCCTGCTTCTTAATGCTCGTATCTATTTACTAATTCTGTCAGCTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCTTAATGCTCGTATCTATTTACTAATTCTGTCAGCTGTGGC  550

seq1  TTTCTGGATGTTTCTATGAACTGCTTTCTTATGATGTGTCTCATAACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATGTTTCTATGAACTGCTTTCTTATGATGTGTCTCATAACACC  600

seq1  TCGAGTGAGTGCCAGGCATTTGCACATTTCCTTGTTTGCTCTGTAGACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGAGTGCCAGGCATTTGCACATTTCCTTGTTTGCTCTGTAGACGT  650

seq1  TGGATGTGATGTAGCCCTTGTGAGTGTGTCTGTGCACTTGTGAACATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGATGTAGCCCTTGTGAGTGTGTCTGTGCACTTGTGAACATCTG  700

seq1  TGCATTTGTGTGGGGATGGCAGCCAGACTGACGTTGACCTTGGGTGCC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCATTTGTGTGGGGATGGCAGCCAGACTGACGTTGACCTTGGGTGCCTT  750

seq1  TCCTCTTTCTCTCCCCACCTTTTGAAGCTCAAGGACAGTTAGAGTTCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCTCTTTCTCTCCCCACCTTTTGAAGCTCAAGGACAGTTAGAGTTC-AA  799

seq1  GGAAACAACAGGGCAGGAGACCTGTAATTCTCTGTAGTCATTCCATGGAA  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAAACAACAGGGCAGGAGACCTGTAATTCTCTGTAGTCATTCCATGGGA  849

seq1  AGGGGAAGACGCAAAGTGGTGTCC-TCTT-GAG-TCTGGACC-CAGAAGA  895
      ||||||||||||||||| |||||| |||| ||| |||||||| |||||||
seq2  AGGGGAAGACGCAAAGT-GTGTCCTTCTTGGAGTTCTGGACCTCAGAAGA  898

seq1  CTAACAAGC-TCAGCAC-TGGA--GGTTAGCAG-CAT-GGCAGAAGGGTG  939
      ||| || || ||||||| ||||  ||| ||||| ||| ||||||||||| 
seq2  CTACCAGGCTTCAGCACTTGGAAGGGTAAGCAGCCATGGGCAGAAGGGT-  947

seq1  GGTAGG-TCAGAA-CTTCAGAGGAAGACTG  967
      | |||| || ||| |||||   ||||||||
seq2  GCTAGGTTCGGAACCTTCA---GAAGACTG  974