BAC Information

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BAC

Clone NameB6Ng01-252F23
Chromosome17 (Build37)
Map Location 41,066,940 - 41,067,801
singlet/doubletsinglet
Overlap geneCenpq
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528
Downstream geneMut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252F23.bB6Ng01-252F23.g
ACCGA059384GA059385
length1,179868
definitionB6Ng01-252F23.b B6Ng01-252F23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactagaacttcaaagaagttcattcattctgtgacgccacagt
tactatgatacctaaattacaaaagacctgaactaagaaagaaaacttca
gaccagttcgcttgtgaatataaatgtaaaaatattcaataaaattctca
caaaccaaatccaagaacacatgaaaaacatcattcataacaaacaagta
ggcttcatcgccaggatgcaggaaagattcaacatacaaaagtccatcga
tgtaattcatcatataaacaaactcaaagaaaaaagccccacgatcatct
cattagatactgagaaaaaaataaaaaagaaagaaaaaaagaaaaaaaac
ttcgacaaaatccagcaccccttcatgttataaatctccgagagatcagg
aattcaaggcacatacctaaacataataaaagcaatttatagcaaaccaa
aagccgacatcaaattaaatgaagagaatcttgacgcaattaaaatcagg
gacaagacaaggctctgcactctctccttatctattcaatatagtacttg
aagttctagcttgagcaataagaacaaaatgagatcaagaggttataaat
tggaaaggaagaagtcaaggtatcaatcactatttgtggatgatatgata
gtatacataaactgggtgggatataaaattaactcaaacaaagcagttgc
ctccttctactcataggataaacaaactgagaaagaaattagggaaataa
caccctttacaatagccacaaataatataaaataccttttgtatctaacc
aagcaaggggcagatgtgtatgacaagaacttcaagtccctgaagaaaga
aaatgaagaaaagttcaaaagatgggaaagatctcccatgctcatggatt
gataagattaacacagtaaaaatatccatcttaccaaaagcaattacaga
ttcaatgcaatctccatcaaattccagcacaattcttcacagacatggga
agagcaactctcacttcatatggaaaaacaaaaaaacccaggtagcaaac
atttctcacaataaaggactgggatcacacctgacctcagctgtactacg
agcatagttatcaaggaaaaaatgattgatcaggacacggacggttcact
aatgaacaggaaattaaagagaccaatag
gaattcttatgatgcaatatgattcaaagaaatttccattgttctgttta
aagtgttttgtagataatagaataaaaatgtgatgagattaccatgttgt
atgtgtgagtgtgtgggggtcaatgaaacccactattttgttttaatata
taccaggagcaataaaaacatagatatataatactaaatacaatactaaa
aattttaatatcatgaatttcaattaaaggtaagttatgttgttcaataa
tgtatctagtaaacccacagaatcaattaagctgggctcataggggctca
cagacactgaactgccaaccagggagcctgaatgggatggacgtaggccc
tctgcacatatgttgcagttgtgtagtttggtcctgtgtgactcctaaca
gtgggaacaggggtatctctgactgttgcctgccttggggaccttttcct
cctattgggtggccttgtccacctttactgggtaaagaggtgtctagtgt
tactgcaacttgatatgccatggctggttaatatctgtggtagggctgcc
cttttctgaagagaaacagaggagtggatagggatgtgcaggtggggaga
agagtctgggaagagaggatggatgtaaaaattaataatattaatagtaa
taataaatctagtataaaggaataggtgaatgatttctggctgagtatga
acacttgaaaaaatttttgaaatacagattgtgttatgcttcaaagtaat
atttccctcaatcttttttgttcccccaaggaattttatttcacataaaa
agaaaaaaagaaattcagtgttatctcaaccagttggaagaaaaggtaac
ccatatttggaaatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41066940_41067801
seq2: B6Ng01-252F23.g_68_935 (reverse)

seq1  AATCATTTCCAATTATGGGTTACCTTTTCTT-CAACTGGTTGAGATGACA  49
      |||||||||||| |||||||||||||||||| |||||||||||||| |||
seq2  AATCATTTCCAAATATGGGTTACCTTTTCTTCCAACTGGTTGAGATAACA  50

seq1  CTGAATTTCTTCTTTTCTTTTTATGTTGAATAAAATTCCACTGGGGAAC-  98
      ||||||||||| ||||||||||||||  |||||||||||   ||||||| 
seq2  CTGAATTTCTTTTTTTCTTTTTATGTGAAATAAAATTCCTTGGGGGAACA  100

seq1  AAAAAGATTGA-GGAAATATTACTTTGAAGCATAACACAATCTGTATTTC  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTGAGGGAAATATTACTTTGAAGCATAACACAATCTGTATTTC  150

seq1  AAAAA-TTTTTCAAGTGTTCATACTCAG-CAG-AATCATTCACCTATTCC  194
      ||||| |||||||||||||||||||||| ||| |||||||||||||||||
seq2  AAAAATTTTTTCAAGTGTTCATACTCAGCCAGAAATCATTCACCTATTCC  200

seq1  TTTATACTAGATTTATTATTACTATTATTATTATTAATTTTTACATCCAT  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTATACTAGATTTATTATTACTATTAATATTATTAATTTTTACATCCAT  250

seq1  CCTCTCTTCCCAGACTCTTCTCCCCACCTGCACATCCCTATCCACTCCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTCCCAGACTCTTCTCCCCACCTGCACATCCCTATCCACTCCTC  300

seq1  TGTTTCTCTTCAGAAAAGGGCAGCCCTACCACAGATATTAACCAGCCATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTCAGAAAAGGGCAGCCCTACCACAGATATTAACCAGCCATG  350

seq1  GCATATCAAGTTGCAGTAACACTAGACACCTCTTTACCCAGTAAAGGTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAAGTTGCAGTAACACTAGACACCTCTTTACCCAGTAAAGGTGG  400

seq1  ACAAGGCCACCCAATAGGAGGAAAAGGTCCCCAAGGCAGGCAACAGTCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCACCCAATAGGAGGAAAAGGTCCCCAAGGCAGGCAACAGTCAG  450

seq1  AGATACCCCTGTTCCCACTGTTAGGAGTCACACAGGACCAAACTACACAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCCTGTTCCCACTGTTAGGAGTCACACAGGACCAAACTACACAA  500

seq1  CTGCAACATATGTGCAGAGGGCCTACGTCCATCCCATTCAGGCTCCCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACATATGTGCAGAGGGCCTACGTCCATCCCATTCAGGCTCCCTGG  550

seq1  TTGGCAGTTCAGTGTCTGTGAGCCCCTATGAGCCCAGCTTAATTGATTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTTCAGTGTCTGTGAGCCCCTATGAGCCCAGCTTAATTGATTCT  600

seq1  GTGGGTTTACTAGATACATTATTGAACAACATAACTTACCTTTAATTGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTACTAGATACATTATTGAACAACATAACTTACCTTTAATTGAA  650

seq1  ATTCATGATATTAAAATTTTTAGTATTGTATTTAGTATTATATATCTATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGATATTAAAATTTTTAGTATTGTATTTAGTATTATATATCTATG  700

seq1  TTTTTATTGCTCCTGGTATATATTAAAACAAAATAGTGGGTTTCATTGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGCTCCTGGTATATATTAAAACAAAATAGTGGGTTTCATTGAC  750

seq1  CCCCACACACTCACACATACAACATGGTAATCTCATCACATTTTTATTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACACTCACACATACAACATGGTAATCTCATCACATTTTTATTCT  800

seq1  ATTATCTACAAAACACTTTAAACAGAACAATGGAAATTTCTTTGAATCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTACAAAACACTTTAAACAGAACAATGGAAATTTCTTTGAATCAT  850

seq1  ATTGCATCATAAGAATTC  862
      ||||||||||||||||||
seq2  ATTGCATCATAAGAATTC  868