BAC Information

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BAC

Clone NameB6Ng01-253C02
Chromosome17 (Build37)
Map Location 47,056,917 - 47,058,073
singlet/doubletsinglet
Overlap genePrph2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc
Downstream geneUbr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253C02.bB6Ng01-253C02.g
ACCGA059946GA059947
length1,1441,155
definitionB6Ng01-253C02.b B6Ng01-253C02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgggcgtcgtcacacttctcgtctggctctttgaggtaggcc
cacagagggctggggaagggagcctgccagacttgggtttaacatggtga
agacagacctggtgagcaaaccctacagggtctcaggtaatctgggctag
ccttgaacttgataagtagccaaggctagcccagaattccttatccttcc
cagtaccaggaaagaggtgtccaccgccatgcagttgagacatactctca
ttatgttgcccatgctacccttgaattcatgatcctctgcctcagtatcc
ccaaaaagctgggatcacagatgtgccatcgtgtctggtgtcattactta
caaaaaagtatttaggtaaaaatcaacaacaacaaaaaaatagacttttt
cttcctttcctttccttttttatttttgaaatagggtctttctatataga
gagctggctgtcctggaactccccaagtagaccaggctggcctcaaactg
acagatatctgcctgcccccacctcctaaatgctgggattaaaggcatgt
gcaaaattaagccgtttattatattcacagtagcacatatccaccacctc
aacctagttctaaaacattttattctcgccccccaccccaagaaaacttc
acacccactaaacagtaacactcatttgtaactgtgcccgcgtgtgtacc
tattgtggacacctggtatgcatggaccaatgggaagctacacaacctct
tgtgcttggcttttcacttagccagactttggggttcccagtactttccc
tgtttgtttctgaggccttggatggttacgtaaactgttacacggggatg
atggcattacctctggggactgctgggagtccctgtgtacgtatatgctg
ggaccttcattcaggcaagagcgtctaaatcgatttgtacttttggaagt
ctagttggtgtttacatgctagtctaatctatgtcatctgtaagctcatt
tccttttctgtagttctggaagtcagcacttccccctcccccatctgcct
ttgtcaataatctttgaggatacgctacacatgttgctaggagctgttct
agtgctgaacagggctacacctagttggggtattccttgcttcg
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtctgtggtgttcttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaaaaactcgggactggcgcaagga
agatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtacagctttacgaggtaagtctg
atcttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aatatgtttggccttgaattttttctggtgttaggagcccttttgttcct
tttcacatgttatcaagtgattaagatagggctgaaaattctagaggaaa
ttcaggacaagctatcagaagtaaagcggggagagagagtaggaacaaag
aggaaatatggtacacaaaataagtatacaggcctttccaagggtcttga
acccgaggaaaagttaaggttaggtaggaatacctggagagagattagaa
gaaaaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctct
aggaaaaggagcctgtgctcatcgctggatgggctcggggagccagctct
tagtagctctgaagcagatgaagaattctcctctgaagaaacagactggg
aggaagaagcagctcattatgagaaaaaagggtaccagccaggtaaagtg
ctagctaatcagttaaggaagccaaaagcggctggcgaaggccagtttgc
tgattggcctcaaggcagtcggcttcaggtccgccctatgcggagtcccc
cgccctgcgtagtgcgtcagcagtgcgcagagaggcagtgcgcagactca
tcatccccagagagaacaaagaaatacaacagcatttcctgtcttgagga
gccgagggtgggcgtgttccacgctccgtaggaatactaccaaataaaaa
ttgcagtcggtcgtaaatacgcacccaatggcgtaattttatcacctttg
aatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47056917_47058073
seq2: B6Ng01-253C02.b_42_1185

seq1  GAATTCCATGGGCGTCGTCACACTTCTCGTCTGGCTCTTTGAGGTAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGCGTCGTCACACTTCTCGTCTGGCTCTTTGAGGTAGGCC  50

seq1  CACAGAGGGCTGGGGAAGGGAGCCTGCCAGACTTGGGTTTAACATGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGCTGGGGAAGGGAGCCTGCCAGACTTGGGTTTAACATGGTGA  100

seq1  AGACAGACCTGGTGAGCAAACCCTACAGGGTCTCAGGTAATCTGGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACCTGGTGAGCAAACCCTACAGGGTCTCAGGTAATCTGGGCTAG  150

seq1  CCTTGAACTTGATAAGTAGCCAAGGCTAGCCCAGAATTCCTTATCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGATAAGTAGCCAAGGCTAGCCCAGAATTCCTTATCCTTCC  200

seq1  CAGTACCAGGAAAGAGGTGTCCACCGCCATGCAGTTGAGACATACTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAGGAAAGAGGTGTCCACCGCCATGCAGTTGAGACATACTCTCA  250

seq1  TTATGTTGCCCATGCTACCCTTGAATTCATGATCCTCTGCCTCAGTATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGCCCATGCTACCCTTGAATTCATGATCCTCTGCCTCAGTATCC  300

seq1  CCAAAAAGCTGGGATCACAGATGTGCCATCGTGTCTGGTGTCATTACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGCTGGGATCACAGATGTGCCATCGTGTCTGGTGTCATTACTTA  350

seq1  CAAAAAAGTATTTAGGTAAAAATCAACAACAACAAAAAAATAGACTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTATTTAGGTAAAAATCAACAACAACAAAAAAATAGACTTTTT  400

seq1  CTTCCTTTCCTTTCCTTTTTTATTTTTGAAATAGGGTCTTTCTATATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCCTTTCCTTTTTTATTTTTGAAATAGGGTCTTTCTATATAGA  450

seq1  GAGCTGGCTGTCCTGGAACTCCCCAAGTAGACCAGGCTGGCCTCAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCTGTCCTGGAACTCCCCAAGTAGACCAGGCTGGCCTCAAACTG  500

seq1  ACAGATATCTGCCTGCCCCCACCTCCTAAATGCTGGGATTAAAGGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATCTGCCTGCCCCCACCTCCTAAATGCTGGGATTAAAGGCATGT  550

seq1  GCAAAATTAAGCCGTTTATTATATTCACAGTAGCACATATCCACCACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTAAGCCGTTTATTATATTCACAGTAGCACATATCCACCACCTC  600

seq1  AACCTAGTTCTAAAACATTTTATTCTCGCCCCCCACCCCAAGAAAACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTTCTAAAACATTTTATTCTCGCCCCCCACCCCAAGAAAACTTC  650

seq1  ACACCCACTAAACAGTAACACTCATTTGTAACTGTGCCCGCGTGTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACTAAACAGTAACACTCATTTGTAACTGTGCCCGCGTGTGTACC  700

seq1  TATTGTGGACACCTGGTATGCATGGACCAATGGGAAGCTACACAACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGACACCTGGTATGCATGGACCAATGGGAAGCTACACAACCTCT  750

seq1  TGTGCTTGGCTTTTCACTTAGCCAGACTTTGGGGTTCCCAGTACTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGCTTTTCACTTAGCCAGACTTTGGGGTTCCCAGTACTTTCCC  800

seq1  TGTTTGTTTCTGAGGCCTTGGATGGTTACGTAAACTGTTACACGGGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTCTGAGGCCTTGGATGGTTACGTAAACTGTTACACGGGGATG  850

seq1  ATGGCATTACCTCTGGGGACTGCTGGGAGTCCCTGTGTACGTATATGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTACCTCTGGGGACTGCTGGGAGTCCCTGTGTACGTATATGCTG  900

seq1  GGACCTTCATTCAGGCAAGAGCGTCTAAATCGATTTGTACTTTTGGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCATTCAGGCAAGAGCGTCTAAATCGATTTGTACTTTTGGAAGT  950

seq1  CTAGTTGGTGTTTACATGCTAGTCTAATCTTATGTCATCTGTAAGGCTCA  1000
      ||||||||||||||||||||||||||||| |||||||||||||| |||| 
seq2  CTAGTTGGTGTTTACATGCTAGTCTAATC-TATGTCATCTGTAA-GCTC-  997

seq1  ATTCCCTTTTCTGTAGTTTCTGGAAGTTCAGCAC-TCCCCCTCCCCCAAT  1049
      ||| |||||||||||| ||||||||| ||||||| |||||||||||| ||
seq2  ATTTCCTTTTCTGTAG-TTCTGGAAG-TCAGCACTTCCCCCTCCCCC-AT  1044

seq1  CTGCCTTTGTCCAAATAATCCTTGGAAGGATACGCTAACACATGGTGCTA  1099
      |||||||||||  ||||||| |||  |||||||||| ||||||| |||||
seq2  CTGCCTTTGTC--AATAATCTTTG--AGGATACGCT-ACACATGTTGCTA  1089

seq1  GGAGCTGTTCTAGGTGCTGAACA-GGCTACAAACTAGTTTGGGGTAAATT  1148
      |||||||||||| |||||||||| |||||| | |||| ||||||| | | 
seq2  GGAGCTGTTCTA-GTGCTGAACAGGGCTAC-ACCTAG-TTGGGGT-ATTC  1135

seq1  CGTGCTTCG  1157
      | |||||||
seq2  CTTGCTTCG  1144