BAC Information

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BAC

Clone NameB6Ng01-254C07
Chromosome17 (Build37)
Map Location 14,514,189 - 14,515,340
singlet/doubletsinglet
Overlap geneSmoc2
Upstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneLOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254C07.bB6Ng01-254C07.g
ACCGA060689GA060690
length1,143741
definitionB6Ng01-254C07.b B6Ng01-254C07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcacaaatagctctttagtctcaagagagtctgaagagaggaa
gagcgatgcaggtggaataatggggcacactggggtacatggctcaaaac
acccgtgggcttttaaaacttccatttaattatgtttgtgtgtggccatg
ggctcatggatgcaggaacatcagatgaccttggagcttgaataacagcg
tggagcacagatgtgagcgcccgccgggaaccaaaactggtcctcatcga
gagcagtacctgttactgatcactcatctgtctccgggccgctcagcata
tggtactttaattaggagcaaaagaagagaggtttgcctaaggggaaaag
atggctctgcgactattttatgtttttattaacctggttttgtttacttt
tctcaaagccactataaggcaaccagagagaagcccctggcatgagagaa
cattgaggaaccccctctcttccacatacagcctgatgctagactccaaa
gaccaagtcatctcttgctgtcagcgggcatgagctaacaaagaggcaag
ggcagcaagctgtcttcccagcttgacatgggagttgaaggctgccgagc
tggaagaaagcaatgtagaaaggaacgcacgtctgcacggaaggaaactc
acccctcggcctctctcacatgacgcttcacctgccaggtggctggctgc
tgggttattgtggaaatcagtttctcctcctcacaaaggggatcctgcat
cctggagttaatttaggactttcctggatttctctcctaataaggataat
gttccaactaatgaaagctattacgtgggtgtgagcagtactctcccaaa
cacttttgggactgcagatgagctggcctctccagggctcggcagaggga
tggtaagccccatggtccttcccccttgtgtcagcaaagtgcagtgcctg
ccttgactctacatgggacctcttctatatgctgagtgtgctcttctgag
taacttctgacctcagacagccaacaatgataccattgtcagttcttcac
agtgacagccactgaattcctcacaaatttcgtacaccccagtctttgat
cagaacggtagccacttaaggtatgcaatcccaccaggagaga
gaattcaattatttttcacttttcccccgtgaaccaagtttcaagacaaa
gccagtgtgttcctcctggtctcctggagaggagggggagtgtgtcaaca
aaaagcttgtttgatctctccacaggctcctggtaattggagtgtgaggg
ctcacagattgggtttgtgtattgctgacgtgggggggggggtttaatcg
ttaacattaaagaacgggtcatggttgtaaagttcatttttcctcgtctg
gaggccaatcacacaactgaagtggagagaaccacccaccccggttgacg
agtttctgatttgcagccttgagccattgggtgctacctgttttttattc
cagatatcactgataatgaatatttaggggcatatttgtggtgaaataaa
aatcttacttctatcaaaaggatttggcgatgatgatcatatcatctata
cagacagccatggaaatgagcacaacatgccatcggatgctgccatccaa
gaacggacctgaggaccaagtcaactatattgtatagtatctttctgctg
catcgtacaaatagggtgagaaaataattcatagcactgtattctaggga
gaattggctatttgttacagactagaacttatagagaatcatacctggac
ttctcatgggctgacctaccctataacaacggggggcagtgtaggcttgt
aaatactggtttgcacaaagttgggtccaattacatgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14514189_14515340
seq2: B6Ng01-254C07.b_43_1185 (reverse)

seq1  TCTCTCCTGGTGGGATTTCATACTTTAGGTGGCTACTGTTCTTGATTCAA  50
      ||||||||||||||||| ||||| ||| |||||||| |||| ||| ||||
seq2  TCTCTCCTGGTGGGATTGCATACCTTAAGTGGCTACCGTTC-TGA-TCAA  48

seq1  AGACTGGGGTTGTACGAAATTTGGTGAG--AATCAGTGGCTGTCACTGTG  98
      ||||||||| |||||||||||| |||||  | ||||||||||||||||||
seq2  AGACTGGGG-TGTACGAAATTT-GTGAGGAATTCAGTGGCTGTCACTGTG  96

seq1  GAGAACCTGAC-ATGGTATCATTGTTTGGCCTGTCTGAAGGTCAGAAGTT  147
       |||| ||||| ||||||||||||||  | ||||||| ||||||||||||
seq2  AAGAA-CTGACAATGGTATCATTGTT--GGCTGTCTG-AGGTCAGAAGTT  142

seq1  ACTCAGAAGAGCCAACACTCAGCATATAGAAGAGGTCCCATGTAGAGTCA  197
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGAGC--ACACTCAGCATATAGAAGAGGTCCCATGTAGAGTCA  190

seq1  AGGCAGCCACTGCACTTTGCTGACACAAGGGGGAAGGACCATGGGGCCTT  247
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGCAGGCACTGCACTTTGCTGACACAAGGGGGAAGGACCATGGGG-CTT  239

seq1  ACCATCCCTCTGCCCGAGCCCTGGAGAGGCCAGCTCATCTGCAGTCCCAA  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTCTG-CCGAGCCCTGGAGAGGCCAGCTCATCTGCAGTCCCAA  288

seq1  AAGTGTTTGGGAGAGTACTGCTCACACCCACGTAATAGCTTTCATTAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGGGAGAGTACTGCTCACACCCACGTAATAGCTTTCATTAGTT  338

seq1  GGAACATTATCCTTATTAGGAGAGAAATCCAGGAAAGTCCTAAATTAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTATCCTTATTAGGAGAGAAATCCAGGAAAGTCCTAAATTAACT  388

seq1  CCAGGATGCAGGATCCCCTTTGTGAGGAGGAGAAACTGATTTCCACAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGCAGGATCCCCTTTGTGAGGAGGAGAAACTGATTTCCACAATA  438

seq1  ACCCAGCAGCCAGCCACCTGGCAGGTGAAGCGTCATGTGAGAGAGGCCGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCAGCCAGCCACCTGGCAGGTGAAGCGTCATGTGAGAGAGGCCGA  488

seq1  GGGGTGAGTTTCCTTCCGTGCAGACGTGCGTTCCTTTCTACATTGCTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGTTTCCTTCCGTGCAGACGTGCGTTCCTTTCTACATTGCTTTC  538

seq1  TTCCAGCTCGGCAGCCTTCAACTCCCATGTCAAGCTGGGAAGACAGCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTCGGCAGCCTTCAACTCCCATGTCAAGCTGGGAAGACAGCTTG  588

seq1  CTGCCCTTGCCTCTTTGTTAGCTCATGCCCGCTGACAGCAAGAGATGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTGCCTCTTTGTTAGCTCATGCCCGCTGACAGCAAGAGATGACT  638

seq1  TGGTCTTTGGAGTCTAGCATCAGGCTGTATGTGGAAGAGAGGGGGTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTGGAGTCTAGCATCAGGCTGTATGTGGAAGAGAGGGGGTTCCT  688

seq1  CAATGTTCTCTCATGCCAGGGGCTTCTCTCTGGTTGCCTTATAGTGGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTCTCATGCCAGGGGCTTCTCTCTGGTTGCCTTATAGTGGCTT  738

seq1  TGAGAAAAGTAAACAAAACCAGGTTAATAAAAACATAAAATAGTCGCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGTAAACAAAACCAGGTTAATAAAAACATAAAATAGTCGCAGA  788

seq1  GCCATCTTTTCCCCTTAGGCAAACCTCTCTTCTTTTGCTCCTAATTAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTTCCCCTTAGGCAAACCTCTCTTCTTTTGCTCCTAATTAAAG  838

seq1  TACCATATGCTGAGCGGCCCGGAGACAGATGAGTGATCAGTAACAGGTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATGCTGAGCGGCCCGGAGACAGATGAGTGATCAGTAACAGGTAC  888

seq1  TGCTCTCGATGAGGACCAGTTTTGGTTCCCGGCGGGCGCTCACATCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCGATGAGGACCAGTTTTGGTTCCCGGCGGGCGCTCACATCTGTG  938

seq1  CTCCACGCTGTTATTCAAGCTCCAAGGTCATCTGATGTTCCTGCATCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGCTGTTATTCAAGCTCCAAGGTCATCTGATGTTCCTGCATCCAT  988

seq1  GAGCCCATGGCCACACACAAACATAATTAAATGGAAGTTTTAAAAGCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATGGCCACACACAAACATAATTAAATGGAAGTTTTAAAAGCCCA  1038

seq1  CGGGTGTTTTGAGCCATGTACCCCAGTGTGCCCCATTATTCCACCTGCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTTTTGAGCCATGTACCCCAGTGTGCCCCATTATTCCACCTGCAT  1088

seq1  CGCTCTTCCTCTCTTCAGACTCTCTTGAGACTAAAGAGCTATTTGTGAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCCTCTCTTCAGACTCTCTTGAGACTAAAGAGCTATTTGTGAGG  1138

seq1  AATTC  1152
      |||||
seq2  AATTC  1143