BAC Information

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BAC

Clone NameB6Ng01-255B13
Chromosome17 (Build37)14 (Build37)
Map Location 26,145,301 - 26,145,34790,012,282 - 90,013,448
singlet/doubletsingletsinglet
Overlap geneRab11fip3
Upstream geneCramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik
Downstream geneDecr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255B13.bB6Ng01-255B13.g
ACCGA061389GA061390
length8871,148
definitionB6Ng01-255B13.b B6Ng01-255B13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,145,301 - 26,145,347)(90,012,282 - 90,013,448)
sequence
gaattctttccctaatttctttctcagcctgcttatcctttgtattaatt
gagttaattttatatccagccactttgctgaagttgtttgtcagctggag
aagttctctggtagaatttttggggtcgcttatgtatactatcttaccat
ctgcaaatagtgagacctttatttcttctttaccaatatgtattcccttg
atctatttttgtggtcttaattctagctaacatttcaagtactatattga
atagatatggggagagtggacatccttgttttgtcccagatttcactggg
attgtttctagtatgtctccacttaatttaatattggctgttggttagca
gtaaattgcttttactatgtttaggtatgggccttgaattcccaatctct
ctaatacgtttaacatgaaggggtgttgtgttttgtcaaatgccttttct
gcatctaaagatatgatcatgtgatatttttcctttgagtttgcttatat
agtgtattatgttaatggattttcacatattaaatcaacctttcatctct
gggatgaagcctacttgatcatggtgaatgatgtttttgatgtgttcttg
gattcagtttgctaggattttattgagtatttttgcattgatattcataa
gaaagattagtttgaagttctctttttaggttggggtcttgtgtggtttg
ggtatcagagtaactgtggcttcatagagtgaattaggtagtgttcctgc
tgtttctattttatggaatagttggaggatagttggtaccaggtattctt
tgaaggtctggtagagttctgcactaaatccatctggccctgcggtattt
tggttgggagtttttttgttgttgtttgtttttttga
gaattcagtgagtcaaacaagagatatattagttgtcatatgactataca
gctatagcagacattgagaatgtttatttaagcttctgaaatgaattaaa
taggtaatctcagtttattaaaacagatataaaggaatattcaagacaca
aaatgagtacgaagactgatagcttaaagtgtactgtttaatagtatgtc
ttttaaagacatgtctcaattattcaaggttttggatctaaatataacaa
aaaataagtggataaattatataacaaaggattcatgagtaaattatata
ttaataatatatatgcaagtgtgcatgatagtattcaaatgtatgtggaa
catatttatctgttaagctgagaatacttagaactgagagtggaaaacta
agttttagtcatattttcctatctagatttctacactgaaataatcttta
cactacattggaaaaaatacactggatgatatctgttcatacatattggt
tcttaaatacaatacagtaagaagcttttctatatgaaatatgagagtta
taaaagaagatccaaagaggataaggttgagttaaaatgtgaattaatgt
gaaacaggtagctgcagatcttcacattttagtttctgtgatcaaataaa
acaaagtttgataggacttatgtatgtttttgagagtttatttttattat
tatttgtgtagagaaagtttaaaacagtatcagtatattaaccacgctca
aaggagatccatgcccaggatcataagttgtgagcaattttgtttacttt
gctattttatgtctatttttcttgtttgtttatctggttatattgtattt
tttgtgttaattcagtggggtgggtacaagtttagggagaacctaatagg
agtgggggatagagagaccataatcagaatatactgtatgaaaaaaaaat
tctattctcgctttaaaacaaaataaaaaaggagacttaaaatatatgga
ttatgaacaaatttattcattggtatctctgttcttatctattaccatac
gtttaagtgataatatttagaaatttctctggttttgtttgttgttggtt
gatggttggtgttttgcaaagaacaggtaccagttattcttatgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26145301_26145347
seq2: B6Ng01-255B13.b_894_932 (reverse)

seq1  CAAACAAAACAAAACAACAACAAAAAAACTCACACAAAACACCAAAA  47
      |||| ||||| |||||||||||||||||||| ||      |||||||
seq2  CAAA-AAAAC-AAACAACAACAAAAAAACTCCCA------ACCAAAA  39

seq1: chr14_90012282_90013448
seq2: B6Ng01-255B13.g_69_1216

seq1  GAATTCAGTGAGTCAAACAAGAGATATATTAGTTGTCATATGACTATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGTCAAACAAGAGATATATTAGTTGTCATATGACTATACA  50

seq1  GCTATAGCAGACATTGAGAATGTTTATTTAAGCTTCTGAAATGAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCAGACATTGAGAATGTTTATTTAAGCTTCTGAAATGAATTAAA  100

seq1  TAGGTAATCTCAGTTTATTAAAACAGATATAAAGGAATATTCAAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATCTCAGTTTATTAAAACAGATATAAAGGAATATTCAAGACACA  150

seq1  AAATGAGTACGAAGACTGATAGCTTAAAGTGTACTGTTTAATAGTATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTACGAAGACTGATAGCTTAAAGTGTACTGTTTAATAGTATGTC  200

seq1  TTTTAAAGACATGTCTCAATTATTCAAGGTTTTGGATCTAAATATAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACATGTCTCAATTATTCAAGGTTTTGGATCTAAATATAACAA  250

seq1  AAAATAAGTGGATAAATTATATAACAAAGGATTCATGAGTAAATTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGGATAAATTATATAACAAAGGATTCATGAGTAAATTATATA  300

seq1  TTAATAATATATATGCAAGTGTGCATGATAGTATTCAAATGTATGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATATATATGCAAGTGTGCATGATAGTATTCAAATGTATGTGGAA  350

seq1  CATATTTATCTGTTAAGCTGAGAATACTTAGAACTGAGAGTGGAAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATCTGTTAAGCTGAGAATACTTAGAACTGAGAGTGGAAAACTA  400

seq1  AGTTTTAGTCATATTTTCCTATCTAGATTTCTACACTGAAATAATCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTCATATTTTCCTATCTAGATTTCTACACTGAAATAATCTTTA  450

seq1  CACTACATTGGAAAAAATACACTGGATGATATCTGTTCATACATATTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATTGGAAAAAATACACTGGATGATATCTGTTCATACATATTGGT  500

seq1  TCTTAAATACAATACAGTAAGAAGCTTTTCTATATGAAATATGAGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATACAATACAGTAAGAAGCTTTTCTATATGAAATATGAGAGTTA  550

seq1  TAAAAGAAGATCCAAAGAGGATAAGGTTGAGTTAAAATGTGAATTAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGATCCAAAGAGGATAAGGTTGAGTTAAAATGTGAATTAATGT  600

seq1  GAAACAGGTAGCTGCAGATCTTCACATTTTAGTTTCTGTGATCAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTAGCTGCAGATCTTCACATTTTAGTTTCTGTGATCAAATAAA  650

seq1  ACAAAGTTTGATAGGACTTATGTATGTTTTTGAGAGTTTATTTTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTGATAGGACTTATGTATGTTTTTGAGAGTTTATTTTTATTAT  700

seq1  TATTTGTGTAGAGAAAGTTTAAAACAGTATCAGTATATTAACCACGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTAGAGAAAGTTTAAAACAGTATCAGTATATTAACCACGCTCA  750

seq1  AAGGAGATCCATGCCCAGGATCATAAGTTGTGAGCAATTTTGTTTACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCCATGCCCAGGATCATAAGTTGTGAGCAATTTTGTTTACTTT  800

seq1  GCTATTTTATGTCTATTTTTCTTGTTTGTTTATCTGGTTATATTGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTATGTCTATTTTTCTTGTTTGTTTATCTGGTTATATTGTATTT  850

seq1  TTTGTGTTAATTCAGTGGGGTGGGTACAAG-TTAGGGAGAACCTAATAGG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGTGTTAATTCAGTGGGGTGGGTACAAGTTTAGGGAGAACCTAATAGG  900

seq1  AGTGGGGGATAGAGAGACCATAATCAGAATATACTGTATGAAAAAAAAA-  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGGGGGATAGAGAGACCATAATCAGAATATACTGTATGAAAAAAAAAT  950

seq1  TCTATTCTCGCTTTAAAAACAAAATAAAAAAGGAAGACTTAAAAATAATA  998
      |||||||||||||| |||||||||||||||||| |||||| ||||||   
seq2  TCTATTCTCGCTTT-AAAACAAAATAAAAAAGG-AGACTT-AAAATA--T  995

seq1  ATGGATTAATGAACAAAATTTATTCATTGGTATCTTCTGTTCTTTATCTA  1048
      ||||||| |||||| ||||||||||||||||||| ||||||| |||||||
seq2  ATGGATT-ATGAAC-AAATTTATTCATTGGTATC-TCTGTTC-TTATCTA  1041

seq1  TTACCAATACGTTTAAGTTGATAATAATTTAGATATTTCTCTGTTTTTTG  1098
      ||||| ||||||||||| ||||||| ||||||| ||||||||| |     
seq2  TTACC-ATACGTTTAAG-TGATAAT-ATTTAGAAATTTCTCTGGT-----  1083

seq1  TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGGAAAAGACAAAGTAA  1148
      ||||||||||   ||| ||| | ||| || ||||| |||  ||  ||  |
seq2  TTTGTTTGTT--GTTGGTTGATGGTTGGTGTTTTGCAAAGAAC--AGGTA  1129

seq1  CCATGTATTCTTATGACAA  1167
      |||  ||||||||||||||
seq2  CCAGTTATTCTTATGACAA  1148