BAC Information

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BAC

Clone NameB6Ng01-255E02
Chromosome17 (Build37)
Map Location 32,988,711 - 32,989,888
singlet/doubletsinglet
Overlap geneLOC631266
Upstream geneSnf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik
Downstream geneBC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255E02.bB6Ng01-255E02.g
ACCGA061507GA061508
length1,2221,168
definitionB6Ng01-255E02.b B6Ng01-255E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcgtgattataacaagcatcgcgctggatgaaggctttccca
caatgcttacaaatatagggtttctctccagtgtgaattctctcatggtt
gttgagatgactggcacggaggaatgcttttccacagtgcttacaaacgt
agggtttctctccggtgtgaattcgctcatgaatgtaacgagcactggaa
tgggtgaaggctttcccacagtgcttacaggagtaaggtttctctccagt
gtgaattctttcatgcctccggaacgatgtagagcatgaaaaggctttcc
cacactgtgtgcacacatagggtttctctctagtgtgaatcctttcatga
ctgtaccagccgctataatgggtgaaagattttccacaatgctcacacgt
gtaaggtttttctccactgtgaattctttcatggataagaaggtcatagg
aacgaatgaaggtttttccacattgcttacatacatatggcctctccccg
ctatggattctttcatggttctgaagggatgaggaatatctgaatgcctt
cccacactgcttacatgtgtaacatttttcttcagggctaattacttcat
gtttaataagatgactagaattaaccaaggcttcaccatactgcttacac
acaaatggttcctctccaatggtgattctctcatatatttgaccgtaact
gtacctccagaaggctttctcaacttgcttccattcacggagtttatctc
cagtgtgaatttgctcacaataccggtcagaattaagactcctataggct
tcattagattgcttattttgatagggtgtctctcgaggaggactttgctt
tgtctgaaaggactcagaagaagtagactctttgcaacacttcacatatt
ccctgagacccacagggtttctctgcagtttcacatctgaggtgcacttc
tgagagggaatgaacaagatgtctctagcaagcacactgtttttacacac
tgattatttcaggaggcgtgtctctacgatgatacaccttctggatcgtt
gccggattctcccacactgactgacattctcggtagtccacaactcctct
cgagccaccagagttctgcaaatggagaaggctacctatacttaatacgg
tcacttagagagtgcctgaaggcttagattggcaggtctccggttccgaa
tattctctgggggcgagctcag
gaattctctaaattcttgttgtgatcccactgatgaggaaaaagtaggag
ttgcccacggtgcattgttacaagcccgatgaggccagaacgaattatgc
ttaaatgtactttctctcatgaaggtagggcctagtaactggctagttgc
attctcctagtaaaacttgtgtctcctgtctccagagctccaggcaaagg
gctcgctggcctatcagaatatatttgagtgcatgaactggccaaggagg
agtgtgcttcttaggtgtaggaagctgccagacccgggtctgttagttca
cttgcccccgctacccacacttcctacccctacagacacactaggcatgt
ttgtgttctctctctttttttttttccaatttgccaagctgtgactgttt
attaactgaccagattacaaaaataccacgggtgacaccttaggtcatct
gtctaataagcctgtttatctggtcttccctgttgccagcatctccacct
tctacaaagtgagttgactttttcttcattccacctcgtggggaagataa
tttgaagggccacaggaagttatttgcggattccttgaagcgtttcccaa
ctgtatagatctcatgaattagatcctccatgcagatgatgccaaactta
ccaagagaccgagcaatcaaggaattatctgtcaaggcaatccgcttctt
gttgattttgccgtagccgcgcttgtagatgagctcatttactgacttca
ggttggggtacccccatgcaatgtatggttccacaattccgcagcatgtt
aattgaagccttgttgagcttaacaaaggtgccgttgaagatctgtcaaa
gacgaagctgcaataccttgcggacccttgagcttactccaatgaatacc
tcggattctgatgacaaaggcccagttttggttctgcgggcacatagaaa
gttcccagcttttccttgccattcggggccatccgaaatctcagtggcgt
aacatctatctgcctgtacctctgtgatagccgctttgcctctcatagat
gagcttcttcctgcctttcgaagtgtcttcaggcaactccttctcaggcg
cttccactccactctgcaattcttcgcttttctaagattctgcacgacgt
acttttcttgagagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32988711_32989888
seq2: B6Ng01-255E02.g_67_1234

seq1  GAATTCTCTAAATTCTTGTTGTGATCCCACTGATGAGGAAAAAGTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAATTCTTGTTGTGATCCCACTGATGAGGAAAAAGTAGGAG  50

seq1  TTGCCCACGGTGCATTGTTACAAGCCCGATGAGGCCAGAACGAATTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACGGTGCATTGTTACAAGCCCGATGAGGCCAGAACGAATTATGC  100

seq1  TTAAATGTACTTTCTCTCATGAAGGTAGGGCCTAGTAACTGGCTAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTACTTTCTCTCATGAAGGTAGGGCCTAGTAACTGGCTAGTTGC  150

seq1  ATTCTCCTAGTAAAACTTGTGTCTCCTGTCTCCAGAGCTCCAGGCAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTAGTAAAACTTGTGTCTCCTGTCTCCAGAGCTCCAGGCAAAGG  200

seq1  GCTCGCTGGCCTATCAGAATATATTTGAGTGCATGAACTGGCCAAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTGGCCTATCAGAATATATTTGAGTGCATGAACTGGCCAAGGAGG  250

seq1  AGTGTGCTTCTTAGGTGTAGGAAGCTGCCAGACCCGGGTCTGTTAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTCTTAGGTGTAGGAAGCTGCCAGACCCGGGTCTGTTAGTTCA  300

seq1  CTTGCCCCCGCTACCCACACTTCCTACCCCTACAGACACACTAGGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCCGCTACCCACACTTCCTACCCCTACAGACACACTAGGCATGT  350

seq1  TTGTGTTCTCTCTCTTTTTTTTTTTCCAATTTGCCAAGCTGTGACTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTCTCTCTTTTTTTTTTTCCAATTTGCCAAGCTGTGACTGTTT  400

seq1  ATTAACTGACCAGATTACAAAAATACCACGGGTGACACCTTAGGTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGACCAGATTACAAAAATACCACGGGTGACACCTTAGGTCATCT  450

seq1  GTCTAATAAGCCTGTTTATCTGGTCTTCCCTGTTGCCAGCATCTCCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATAAGCCTGTTTATCTGGTCTTCCCTGTTGCCAGCATCTCCACCT  500

seq1  TCTACAAAGTGAGTTGACTTTTTCTTCATTCCACCTCGTGGGGAAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTGACTTTTTCTTCATTCCACCTCGTGGGGAAGATAA  550

seq1  TTTGAAGGGCCACAGGAAGTTATTTGCGGATTCCTTGAAGCGTTTCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGGCCACAGGAAGTTATTTGCGGATTCCTTGAAGCGTTTCCCAA  600

seq1  CTGTATAGATCTCATGAATTAGATCCTCCATGCAGATGATGCCAAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGATCTCATGAATTAGATCCTCCATGCAGATGATGCCAAACTTA  650

seq1  CCAAGAGACCGAGCAATCAAGGAATTATCTGTCAAGGCAATCCGCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGACCGAGCAATCAAGGAATTATCTGTCAAGGCAATCCGCTTCTT  700

seq1  GTTGATTTTGCCGTAGCCGCGCTTGTAGATGAGCTCATTTACTGACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTTGCCGTAGCCGCGCTTGTAGATGAGCTCATTTACTGACTTCA  750

seq1  GGTTGGGGTACCCCCATGCAATGTATGGTTCCACAA-TCCGCAGCATGTT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTTGGGGTACCCCCATGCAATGTATGGTTCCACAATTCCGCAGCATGTT  800

seq1  AATTGAAGCCTTGTTGAGCTTAACAAAGGTGCCGTTGAAGATCTGTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGCCTTGTTGAGCTTAACAAAGGTGCCGTTGAAGATCTGTCAAA  850

seq1  GACGAAGCTGCAATACCTTGCGGACCTTTGAGCTTACTCCATTG-ATACC  898
      |||||||||||||||||||||||||| |||||||||||||| || |||||
seq2  GACGAAGCTGCAATACCTTGCGGACCCTTGAGCTTACTCCAATGAATACC  900

seq1  TCGGATTCTGATGACAAAGG-CCAGTTTTGGTTCTGCGGGCACATAG-AA  946
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TCGGATTCTGATGACAAAGGCCCAGTTTTGGTTCTGCGGGCACATAGAAA  950

seq1  GTTCCCAGC-TTTCCTTGCCA-TCCGGGCCATCCG-AATCTCAGT-GCGG  992
      ||||||||| ||||||||||| || |||||||||| ||||||||| ||| 
seq2  GTTCCCAGCTTTTCCTTGCCATTCGGGGCCATCCGAAATCTCAGTGGCGT  1000

seq1  TACATCTATCTGCCTGTACTCCTTGTGATAG-CGCTTTGCCTTCTCATAG  1041
       |||||||||||||||||| |  |||||||| ||||||||| ||||||||
seq2  AACATCTATCTGCCTGTAC-CTCTGTGATAGCCGCTTTGCC-TCTCATAG  1048

seq1  ATGAGCTTCCTCCTTGCCTTTCGAAGTGTCTTCAGGGCAAACTTCTTCCT  1091
      ||||||||| ||| ||||||||||||||||||||||   |||| ||| ||
seq2  ATGAGCTTCTTCC-TGCCTTTCGAAGTGTCTTCAGG--CAACTCCTT-CT  1094

seq1  CAGGCGCTTCACCTTCAACTCTGCGAAATTCCTTCGCTTTTTCTTAAGGG  1141
      |||||||||| |  || |||||||  |||| ||||||||||   |||  |
seq2  CAGGCGCTTC-CACTCCACTCTGC--AATT-CTTCGCTTTT--CTAA--G  1136

seq1  TTTCTGGCACAGCCGGAACCTTTTTCTTGAGAGTTTT  1178
       |||| |||| | || |    ||||||||||||||||
seq2  ATTCT-GCAC-GACGTA---CTTTTCTTGAGAGTTTT  1168