BAC Information

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BAC

Clone NameB6Ng01-256C02
Chromosome17 (Build37)
Map Location 50,746,358 - 50,892,771
singlet/doubletdoublet
Overlap genePlcl2, EG654432, Tbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256C02.bB6Ng01-256C02.g
ACCGA062168GA062169
length1,1701,061
definitionB6Ng01-256C02.b B6Ng01-256C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,891,585 - 50,892,771)(50,746,358 - 50,747,423)
sequence
gaattcattattattctcaatttttatcatgtgtgcaataaatgacttaa
aatgtcaagtgctaatcaagactgttttataactgatagcagaacaaata
aagaaaaagcttttggaagaaaaattatatagtaatgtttgttcaaatgg
ctggcaggctggttcatctcctcctggcctggagctcagtgctgagggag
gatttgtctcgtcagagtcctaattttattaactccatgtaaaatgcaaa
gatttagaactgaaaatagttttattagatctaaattttccctgtcaatt
tcagactatttttttttttacttgttcattattctgttactatagttact
ccctgctcaccctcctgacaagctattgacaatgttaacctctggggctg
agctcaaggtagtttaaaaattgctgaatttcatatagatgtgcacatga
atggcagcctgaacttgtgtgatcttacggagctggactgtgcggtggct
gttttcagtatgcattagctcttactctacacaatccccgtgcccacagc
aggcagctccaaactgacctacctccactagattgggaagtagagcctct
tttccagtcacaggctgcctttatgtgacacttgcaatggaagggtcctt
tgcagtgatgtagaggaattgtctttctctgctctcactgagagtgcagt
agctgatagcttcagagaacagtaaagtcacttgcagctggagcaatggc
tcaacggttaaagacacttctgcttctgcagagaactagcattcagttcc
cagcacccacatcacagggtgcacaccaccttttactgtagatctaggaa
atccaacaccctctgttggcttttgcaggtaattgtatataagacacaca
cacaccaccaccacaccacatattttttaaagaatataaacctgccatac
caacatcttcacttaggaacggcagcttctagccttgtgaaagaatacag
ttctattctgttccatctctatgtttgacatactgttttaccacatccct
tgcaaactagttcaacataatagctgtgagtagtgagatgagatccggat
catctcattttccctcagtaaagcggcagtgtgaagctcccaggctggca
gctctgtgaggtactcttca
gaattccttgataccaaggaccttatgatgtttcttgaggcagaacaggg
tgtagcacatatcaatgaggaaataagcctggaaattattcacaaatacg
agccatccaaagaaggccaggaaaagggctggctctccatagatggattc
actaactacctgatgtcacctgattgttacatctttgatccggaacataa
gaaggtctgtcaggatatgaagcaacctctgtctcattactttataaact
catctcataatacatacttaatagaggatcagttccggggtccctctgac
atcacgggatatatccgcgctctgaaaatgggttgcaggagcgttgaatt
agatgtgtgggatgggccagataatgagcctgtgatttacacaggccaca
ccatgacctctcagatagtcttccgcagcgtcatcgacatcattaacaag
tacgcgttctttgcttctgagtatcctctcatcttatgtttagaaaacca
ctgctctattaaacaacagaaggtgatggttcaacacatgaagaaaattt
taggagacaagctgtatacgacatcacccaacatggaggaatcttatcta
ccatccccagatgtcctgaaagggaaaatactaatcaaagcaaagaagct
gtcttcaaattgctccggcgtggaaggggatgttactgatgaggatgaag
gagcagaaatgtctcagaggatggggaaagagaatgtggaacaacccaac
catgtgcctgtgaagcggtttcagctttgcaaagaactgtccgagctggt
cagcatctgtaaatccgtccagttcaaggagtttcaggtgtcgtttcagt
gcagaagtactgggaagtgtgctcctttaatgaagtacttgcgagtaaat
acgcccaatgagaaccccggggacttgtgaattacataagcgtttccttc
gccaggtcttccctagtccattgagaattgactcagcacatgaccctcag
gatttttggaaatggtggcctgtcagattgtagcaatgacctccagactc
agggctgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50891585_50892771
seq2: B6Ng01-256C02.b_46_1215 (reverse)

seq1  TGAAGAGCACCTCACAGAGCTGCCAGGCCTGGGGAAAGCCTACCACTGGC  50
      ||||||| ||||||||||||||||| |||||||   ||| |  |||| ||
seq2  TGAAGAGTACCTCACAGAGCTGCCA-GCCTGGG---AGCTTCACACT-GC  45

seq1  CGGCTTTTACTTGAGGGGAAAATGAGATGAT-CTGATCTCATCTCACTAC  99
      ||   ||||| ||| |||||||||||||||| | ||||||||||||||||
seq2  CG--CTTTAC-TGA-GGGAAAATGAGATGATCCGGATCTCATCTCACTAC  91

seq1  TCACAGCTTAATTATGTTGGACTAGTTTCCAGGGGATGTGGTTAAAACAG  149
      ||||||||  ||||||||| |||||||| || ||||||||| ||||||||
seq2  TCACAGCT--ATTATGTTGAACTAGTTTGCAAGGGATGTGG-TAAAACAG  138

seq1  TATGTCAAACATAGAGATGGAACAGAATAGAACTGTATTCTTTCACAAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAACATAGAGATGGAACAGAATAGAACTGTATTCTTTCACAAGG  188

seq1  CTAGAAGCTGCCGTT-CTAAGTGAAGATGTTGGTATGGCAGGTTTAATAT  248
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTAGAAGCTGCCGTTCCTAAGTGAAGATGTTGGTATGGCAGGTTT-ATAT  237

seq1  TCTTTAAAAAATATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTA  298
      ||||||||||||| |||| ||||| ||| ||| ||||||||||||| |||
seq2  TCTTTAAAAAATA-TGTG-GTGTG-GTG-GTG-GTGTGTGTGTGTC-TTA  281

seq1  TATACAATTACCTGCAAAAGCCAACAGAGGGTGTTGGATTTCCTAGATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTACCTGCAAAAGCCAACAGAGGGTGTTGGATTTCCTAGATCT  331

seq1  ACAGTAAAAGGTGGTGTGCACCCTGTGATGTGGGTGCTGGGAACTGAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAAGGTGGTGTGCACCCTGTGATGTGGGTGCTGGGAACTGAATG  381

seq1  CTAGTTCTCTGCAGAAGCAGAAGTGTCTTTAACCGTTGAGCCATTGCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCTGCAGAAGCAGAAGTGTCTTTAACCGTTGAGCCATTGCTCC  431

seq1  AGCTGCAAGTGACTTTACTGTTCTCTGAAGCTATCAGCTACTGCACTCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAGTGACTTTACTGTTCTCTGAAGCTATCAGCTACTGCACTCTC  481

seq1  AGTGAGAGCAGAGAAAGACAATTCCTCTACATCACTGCAAAGGACCCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGCAGAGAAAGACAATTCCTCTACATCACTGCAAAGGACCCTTC  531

seq1  CATTGCAAGTGTCACATAAAGGCAGCCTGTGACTGGAAAAGAGGCTCTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAGTGTCACATAAAGGCAGCCTGTGACTGGAAAAGAGGCTCTAC  581

seq1  TTCCCAATCTAGTGGAGGTAGGTCAGTTTGGAGCTGCCTGCTGTGGGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATCTAGTGGAGGTAGGTCAGTTTGGAGCTGCCTGCTGTGGGCAC  631

seq1  GGGGATTGTGTAGAGTAAGAGCTAATGCATACTGAAAACAGCCACCGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGTGTAGAGTAAGAGCTAATGCATACTGAAAACAGCCACCGCAC  681

seq1  AGTCCAGCTCCGTAAGATCACACAAGTTCAGGCTGCCATTCATGTGCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTCCGTAAGATCACACAAGTTCAGGCTGCCATTCATGTGCACA  731

seq1  TCTATATGAAATTCAGCAATTTTTAAACTACCTTGAGCTCAGCCCCAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGAAATTCAGCAATTTTTAAACTACCTTGAGCTCAGCCCCAGAG  781

seq1  GTTAACATTGTCAATAGCTTGTCAGGAGGGTGAGCAGGGAGTAACTATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTGTCAATAGCTTGTCAGGAGGGTGAGCAGGGAGTAACTATAG  831

seq1  TAACAGAATAATGAACAAGTAAAAAAAAAAATAGTCTGAAATTGACAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAATAATGAACAAGTAAAAAAAAAAATAGTCTGAAATTGACAGGG  881

seq1  AAAATTTAGATCTAATAAAACTATTTTCAGTTCTAAATCTTTGCATTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGATCTAATAAAACTATTTTCAGTTCTAAATCTTTGCATTTTA  931

seq1  CATGGAGTTAATAAAATTAGGACTCTGACGAGACAAATCCTCCCTCAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTTAATAAAATTAGGACTCTGACGAGACAAATCCTCCCTCAGCA  981

seq1  CTGAGCTCCAGGCCAGGAGGAGATGAACCAGCCTGCCAGCCATTTGAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCCAGGCCAGGAGGAGATGAACCAGCCTGCCAGCCATTTGAACA  1031

seq1  AACATTACTATATAATTTTTCTTCCAAAAGCTTTTTCTTTATTTGTTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTATATAATTTTTCTTCCAAAAGCTTTTTCTTTATTTGTTCTG  1081

seq1  CTATCAGTTATAAAACAGTCTTGATTAGCACTTGACATTTTAAGTCATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTATAAAACAGTCTTGATTAGCACTTGACATTTTAAGTCATTT  1131

seq1  ATTGCACACATGATAAAAATTGAGAATAATAATGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACACATGATAAAAATTGAGAATAATAATGAATTC  1170

seq1: chr17_50746358_50747423
seq2: B6Ng01-256C02.g_62_1122

seq1  GAATTCCTTGATACCAAGGACCTTATGATGTTTCTTGAGGCAGAACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATACCAAGGACCTTATGATGTTTCTTGAGGCAGAACAGGG  50

seq1  TGTAGCACATATCAATGAGGAAATAAGCCTGGAAATTATTCACAAATACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACATATCAATGAGGAAATAAGCCTGGAAATTATTCACAAATACG  100

seq1  AGCCATCCAAAGAAGGCCAGGAAAAGGGCTGGCTCTCCATAGATGGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCAAAGAAGGCCAGGAAAAGGGCTGGCTCTCCATAGATGGATTC  150

seq1  ACTAACTACCTGATGTCACCTGATTGTTACATCTTTGATCCGGAACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTACCTGATGTCACCTGATTGTTACATCTTTGATCCGGAACATAA  200

seq1  GAAGGTCTGTCAGGATATGAAGCAACCTCTGTCTCATTACTTTATAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGTCAGGATATGAAGCAACCTCTGTCTCATTACTTTATAAACT  250

seq1  CATCTCATAATACATACTTAATAGAGGATCAGTTCCGGGGTCCCTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATAATACATACTTAATAGAGGATCAGTTCCGGGGTCCCTCTGAC  300

seq1  ATCACGGGATATATCCGCGCTCTGAAAATGGGTTGCAGGAGCGTTGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGGATATATCCGCGCTCTGAAAATGGGTTGCAGGAGCGTTGAATT  350

seq1  AGATGTGTGGGATGGGCCAGATAATGAGCCTGTGATTTACACAGGCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTGGGATGGGCCAGATAATGAGCCTGTGATTTACACAGGCCACA  400

seq1  CCATGACCTCTCAGATAGTCTTCCGCAGCGTCATCGACATCATTAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCTCTCAGATAGTCTTCCGCAGCGTCATCGACATCATTAACAAG  450

seq1  TACGCGTTCTTTGCTTCTGAGTATCCTCTCATCTTATGTTTAGAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCGTTCTTTGCTTCTGAGTATCCTCTCATCTTATGTTTAGAAAACCA  500

seq1  CTGCTCTATTAAACAACAGAAGGTGATGGTTCAACACATGAAGAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTATTAAACAACAGAAGGTGATGGTTCAACACATGAAGAAAATTT  550

seq1  TAGGAGACAAGCTGTATACGACATCACCCAACATGGAGGAATCTTATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACAAGCTGTATACGACATCACCCAACATGGAGGAATCTTATCTA  600

seq1  CCATCCCCAGATGTCCTGAAAGGGAAAATACTAATCAAAGCAAAGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCAGATGTCCTGAAAGGGAAAATACTAATCAAAGCAAAGAAGCT  650

seq1  GTCTTCAAATTGCTCCGGCGTGGAAGGGGATGTTACTGATGAGGATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAATTGCTCCGGCGTGGAAGGGGATGTTACTGATGAGGATGAAG  700

seq1  GAGCAGAAATGTCTCAGAGGATGGGGAAAGAGAATGTGGAACAACCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAATGTCTCAGAGGATGGGGAAAGAGAATGTGGAACAACCCAAC  750

seq1  CATGTGCCTGTGAAGCGGTTTCAGCTTTGCAAAGAACTGTCCGAGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTGTGAAGCGGTTTCAGCTTTGCAAAGAACTGTCCGAGCTGGT  800

seq1  CAGCATCTGTAAATCCGTCCAGTTCAAGGAGTTTCAGGTGTCGTTTCAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCATCTGTAAATCCGTCCAGTTCAAGGAGTTTCAGGTGTCGTTTCA-G  849

seq1  TGCAGAAGTACTGGGAAGTGTGCTCCTTTAATGAAGTACTTGCGAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTACTGGGAAGTGTGCTCCTTTAATGAAGTACTTGCGAGTAAA  899

seq1  TACG-CCAATGAGAACCCCGGGGACTTTGTGAATTACAATAAGCGTTTCC  949
      |||| |||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TACGCCCAATGAGAACCCCGGGGAC-TTGTGAATTAC-ATAAGCGTTTCC  947

seq1  -TCGCCAGGGTCTTCCCTAGTCCAATGAGAATTGACTCAAGCAACATGAA  998
       |||||| |||||||||||||||| ||||||||||||| ||| ||||| |
seq2  TTCGCCA-GGTCTTCCCTAGTCCATTGAGAATTGACTC-AGC-ACATG-A  993

seq1  CCCTCAGGATTTTTGGAAAT-GTGG-CTGTCAGATTGTAGCCATGAACTT  1046
      |||||||||||||||||||| |||| ||||||||||||||| ||| || |
seq2  CCCTCAGGATTTTTGGAAATGGTGGCCTGTCAGATTGTAGCAATG-ACCT  1042

seq1  CCAGACTCCAGGGCTGATGA  1066
      ||||||| ||||||||||||
seq2  CCAGACT-CAGGGCTGATGA  1061