BAC Information

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BAC

Clone NameB6Ng01-256C12
Chromosome17 (Build37)
Map Location 80,352,837 - 80,448,237
singlet/doubletdoublet
Overlap geneHnrpll
Upstream genePrkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
Downstream geneGpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256C12.bB6Ng01-256C12.g
ACCGA062188GA062189
length1,1841,157
definitionB6Ng01-256C12.b B6Ng01-256C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,352,837 - 80,354,020)(80,447,067 - 80,448,237)
sequence
gaattctgggatggacgggcagcttgccccttcctttaagcagtgaagat
gagatacaaagcaagcgcactgagggtgagattaaagaggtcagttcgat
ggaaacacagcccctgcccgcctcttctgcatcactcgcagctcagatgg
gcacgtacattctctccagaatgcgactgagaagcctccaaaattctttc
tccatccagatgcccaatctcaaatctgttcttaaaaagccacattcttt
tactcaagattttgcatttggcagcattgctagacgggggcctcagtacc
atttaggtttcagtggaaaatcaatgctggtctccaggctgcagttcctc
ttcttggatctgagaaacggattctcccctctgtctctctagctgtagac
tttccctgcatcaacacaaagaccttacaggctccagctctggactattc
tgtgtccactttatatccctagggaactctctccagagctgagctttagt
tagatcccaggcctcatccaatcttgatctctttttctagggcatcaccc
atgctgtgctttgaagatgagatgcccctgcatcgtctcatgttttgaac
acttggcctccaactgattggggagtgtagaaaccttaaagggtaaagca
taactgggtaggtgagtcactgggtgcttgccttgggaggttctacctgg
tcccagccatggtcctctgccacatgtttctacccccatgatggtctgtc
tctctgtaagcccagaatctacgaagccaaggactatgcactgaagcccc
tgaaaccgtgatctaaaatacatcccctcccccgcccttgcttacatgaa
gtgtttttgtcatgaaaggatgaacaactaactcaatgaacatctaactt
tgatccatcaaacaaaaaaccattttccaactgagcatgaaagctcttaa
gtgttttggcttttgggtttttagtttttcatagctaacttagctaagcc
tcattatatgcttagaacttctcttggctgtgaacacaaaggaagtaaga
caaaatagcaacctgcatcttagtctgtagggaatacaagactgaccata
aaattgtgacagtgtccttagagaacagcttcactggagttcaccaatca
ttgcattctcagaatattttccttgggccctcgc
gaattcttcagccacatttccttaatgaagccttacgtttgagtcagtcc
tttgcgcccagaaggctaaagcagcactcaatggagctgatatatatgcc
ggatgttgcacactaaaaattgaatatgcaagggtaagcatttctttcga
cagtctaccaaaggaatatttatacttgggtattcaatttaaacttactt
atcttcactttccacagccaactcgtctaaatgttattaggaatgacaat
gacagttgggactacactaaaccttatttgggaagacgaggtaggtattt
tacgaattttagaatgtactgagatctgctgagaaactttacaagcagtc
gcattcttttttttctgagatgagctagttaattaaaatgaaaatcttgt
tgaatgcttttgttacaaaagtccgtgtaatgctggaaattaaccttgga
cattagtgccccctactggtacctgctgagcttatttatatttagttcaa
caaggagccctcacatacaggcacgcccgcagttcaaggacttgcatttc
tccaagcagctctctctctttggaggagaggaaactgattcagaatattc
cttacaaactgcaaacttgcacactgcttctctatggaaaggacttttcc
cccaagctggacgaggcattcagaaggctagaggactccggcaggctgac
tctacacttcatcatgcacaacaccggcatcagcaaagccctctgaaaaa
ctcagacttgcaattcaccttgactgcatactacatgcatcatcagccca
agtttgtaaaggacgacatttaacagtacttcagacttgcatgggatgaa
caccatgatagactgtgcccatttattcaagttgtatgtatactgatcgg
atttcccttaaggttccagttgtagagttttatttatgaaaactagactt
tatgtaatgttgtaaagttactgcccattgatgtaactgtattcagctag
atttaatgtaattggtttttaccaggggtcagtttatctacacaccttgg
ggatgatattgctaccgtcacaccagacgtcaagatctgtggtagaaagg
tgtgagtgttgagatagctggtccatggtgtgagcacgcgtcttaagatg
tgtgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80352837_80354020
seq2: B6Ng01-256C12.b_46_1229

seq1  GAATTCTGGGATGGACGGGCAGCTTGCCCCTTCCTTTAAGCAGTGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGATGGACGGGCAGCTTGCCCCTTCCTTTAAGCAGTGAAGAT  50

seq1  GAGATACAAAGCAAGCGCACTGAGGGTGAGATTAAAGAGGTCAGTTCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAAAGCAAGCGCACTGAGGGTGAGATTAAAGAGGTCAGTTCGAT  100

seq1  GGAAACACAGCCCCTGCCCGCCTCTTCTGCATCACTCGCAGCTCAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGCCCCTGCCCGCCTCTTCTGCATCACTCGCAGCTCAGATGG  150

seq1  GCACGTACATTCTCTCCAGAATGCGACTGAGAAGCCTCCAAAATTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTACATTCTCTCCAGAATGCGACTGAGAAGCCTCCAAAATTCTTTC  200

seq1  TCCATCCAGATGCCCAATCTCAAATCTGTTCTTAAAAAGCCACATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAGATGCCCAATCTCAAATCTGTTCTTAAAAAGCCACATTCTTT  250

seq1  TACTCAAGATTTTGCATTTGGCAGCATTGCTAGACGGGGGCCTCAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGATTTTGCATTTGGCAGCATTGCTAGACGGGGGCCTCAGTACC  300

seq1  ATTTAGGTTTCAGTGGAAAATCAATGCTGGTCTCCAGGCTGCAGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTTTCAGTGGAAAATCAATGCTGGTCTCCAGGCTGCAGTTCCTC  350

seq1  TTCTTGGATCTGAGAAACGGATTCTCCCCTCTGTCTCTCTAGCTGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATCTGAGAAACGGATTCTCCCCTCTGTCTCTCTAGCTGTAGAC  400

seq1  TTTCCCTGCATCAACACAAAGACCTTACAGGCTCCAGCTCTGGACTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCATCAACACAAAGACCTTACAGGCTCCAGCTCTGGACTATTC  450

seq1  TGTGTCCACTTTATATCCCTAGGGAACTCTCTCCAGAGCTGAGCTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACTTTATATCCCTAGGGAACTCTCTCCAGAGCTGAGCTTTAGT  500

seq1  TAGATCCCAGGCCTCATCCAATCTTGATCTCTTTTTCTAGGGCATCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCAGGCCTCATCCAATCTTGATCTCTTTTTCTAGGGCATCACCC  550

seq1  ATGCTGTGCTTTGAAGATGAGATGCCCCTGCATCGTCTCATGTTTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCTTTGAAGATGAGATGCCCCTGCATCGTCTCATGTTTTGAAC  600

seq1  ACTTGGCCTCCAACTGATTGGGGAGTGTAGAAACCTTAAAGGGTAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCTCCAACTGATTGGGGAGTGTAGAAACCTTAAAGGGTAAAGCA  650

seq1  TAACTGGGTAGGTGAGTCACTGGGTGCTTGCCTTGGGAGGTTCTACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGTAGGTGAGTCACTGGGTGCTTGCCTTGGGAGGTTCTACCTGG  700

seq1  TCCCAGCCATGGTCCTCTGCCACATGTTTCTACCCCCATGATGGTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCATGGTCCTCTGCCACATGTTTCTACCCCCATGATGGTCTGTC  750

seq1  TCTCTGTAAGCCCAGAATCTACGAAGCCAAGGACTATGCACTGAAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAAGCCCAGAATCTACGAAGCCAAGGACTATGCACTGAAGCCCC  800

seq1  TGAAACCGTGATCTAAAATACATCCCCTCCCCCGCCCTTGCTTACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGTGATCTAAAATACATCCCCTCCCCCGCCCTTGCTTACATGAA  850

seq1  GTGTTTTTGTCATG-AAGGATGAACAACTAACTCAATGAACATCTAAC-T  898
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GTGTTTTTGTCATGAAAGGATGAACAACTAACTCAATGAACATCTAACTT  900

seq1  TGATCCATCAAACAAAAAACCATTTTCCAACTGAGCATGAAAGCTCTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCAAACAAAAAACCATTTTCCAACTGAGCATGAAAGCTCTTAA  950

seq1  GTGTTTTGGCTTTT-GGTTTTTAGTTTTTCATTAGCTAACTTAGCTAAGC  997
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GTGTTTTGGCTTTTGGGTTTTTAGTTTTTCA-TAGCTAACTTAGCTAAGC  999

seq1  CTCATTATATGCTTAGAACTTCTCTTGGCTGTGGAACACAAAGGAAGTAA  1047
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATTATATGCTTAGAACTTCTCTTGGCTGT-GAACACAAAGGAAGTAA  1048

seq1  GACAAAATAGCAAACCCTGCATCCTTTAGTCTGTAGGGAATACAAGACTG  1097
      |||||||||||||  ||||||||  |||||||||||||||||||||||||
seq2  GACAAAATAGCAA--CCTGCATC--TTAGTCTGTAGGGAATACAAGACTG  1094

seq1  ACCATAAAA-TGTGACAGTGTCCCTTAGAG-ACAGCTTCAACTGAAAGTT  1145
      ||||||||| ||||||||||| |||||||| |||||||| ||||  ||||
seq2  ACCATAAAATTGTGACAGTGT-CCTTAGAGAACAGCTTC-ACTG-GAGTT  1141

seq1  CACCAATCATTTGCATCCTCAG-ATATTT--CT--GGCCCTCGC  1184
      ||||||||| |||||| ||||| ||||||  ||  |||||||||
seq2  CACCAATCA-TTGCATTCTCAGAATATTTTCCTTGGGCCCTCGC  1184

seq1: chr17_80447067_80448237
seq2: B6Ng01-256C12.g_66_1222 (reverse)

seq1  ATTCACAC----TAAG-CGCGTGCTTCACACCACTGACCAGCTTATCCTC  45
      ||||||||    |||| ||||||| ||||||||  ||||||| ||| |||
seq2  ATTCACACATCTTAAGACGCGTGC-TCACACCATGGACCAGC-TAT-CTC  47

seq1  AGACAAACCACACCTTTCTACCCACAGATCTTTAACGTCT-GTGTGAATT  94
      | || |  |||||||||||| ||||||||| || |||||| ||||||   
seq2  A-AC-ACTCACACCTTTCTA-CCACAGATC-TTGACGTCTGGTGTGA--C  91

seq1  GGTTAAGCATTATCAATCCCCAAGGTGTGTAGATAAACTGACCCCTGGTT  144
      |||  |||| |||| ||||||||||||||||||||||||||||||||| |
seq2  GGT--AGCAATATC-ATCCCCAAGGTGTGTAGATAAACTGACCCCTGG-T  137

seq1  AAAAACCAATTAACAATTTAAAATCTAAGCTGAATACAGTTACATCAATG  194
      ||||||||||| |||   | |||||| |||||||||||||||||||||||
seq2  AAAAACCAATT-ACA---TTAAATCT-AGCTGAATACAGTTACATCAATG  182

seq1  GGCAGTAAACTTTACAACATTACATAAAGTCTAGTTTTCATAAATAAAAA  244
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCAGT-AACTTTACAACATTACATAAAGTCTAGTTTTCATAAAT-AAAA  230

seq1  CTCTACAACTGGAACCTTAAGGGAAATCCGATCAGTATACATACAACTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAACTGGAACCTTAAGGGAAATCCGATCAGTATACATACAACTTG  280

seq1  AATAAATGGGCACAGTCTATCATGGTGTTCATCCCATGCAAGTCTGAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGGCACAGTCTATCATGGTGTTCATCCCATGCAAGTCTGAAGT  330

seq1  ACTGTTAAATGTCGTCCTTTACAAACTTGGGCTGATGATGCATGTAGTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAATGTCGTCCTTTACAAACTTGGGCTGATGATGCATGTAGTAT  380

seq1  GCAGTCAAGGTGAATTGCAAGTCTGAGTTTTTCAGAGGGCTTTGCTGATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAGGTGAATTGCAAGTCTGAGTTTTTCAGAGGGCTTTGCTGATG  430

seq1  CCGGTGTTGTGCATGATGAAGTGTAGAGTCAGCCTGCCGGAGTCCTCTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTTGTGCATGATGAAGTGTAGAGTCAGCCTGCCGGAGTCCTCTAG  480

seq1  CCTTCTGAATGCCTCGTCCAGCTTGGGGGAAAAGTCCTTTCCATAGAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATGCCTCGTCCAGCTTGGGGGAAAAGTCCTTTCCATAGAGAA  530

seq1  GCAGTGTGCAAGTTTGCAGTTTGTAAGGAATATTCTGAATCAGTTTCCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGCAAGTTTGCAGTTTGTAAGGAATATTCTGAATCAGTTTCCTC  580

seq1  TCCTCCAAAGAGAGAGAGCTGCTTGGAGAAATGCAAGTCCTTGAACTGCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAAGAGAGAGAGCTGCTTGGAGAAATGCAAGTCCTTGAACTGCG  630

seq1  GGCGTGCCTGTATGTGAGGGCTCCTTGTTGAACTAAATATAAATAAGCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCCTGTATGTGAGGGCTCCTTGTTGAACTAAATATAAATAAGCTC  680

seq1  AGCAGGTACCAGTAGGGGGCACTAATGTCCAAGGTTAATTTCCAGCATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTACCAGTAGGGGGCACTAATGTCCAAGGTTAATTTCCAGCATTA  730

seq1  CACGGACTTTTGTAACAAAAGCATTCAACAAGATTTTCATTTTAATTAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGACTTTTGTAACAAAAGCATTCAACAAGATTTTCATTTTAATTAAC  780

seq1  TAGCTCATCTCAGAAAAAAAAGAATGCGACTGCTTGTAAAGTTTCTCAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATCTCAGAAAAAAAAGAATGCGACTGCTTGTAAAGTTTCTCAGC  830

seq1  AGATCTCAGTACATTCTAAAATTCGTAAAATACCTACCTCGTCTTCCCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGTACATTCTAAAATTCGTAAAATACCTACCTCGTCTTCCCAA  880

seq1  ATAAGGTTTAGTGTAGTCCCAACTGTCATTGTCATTCCTAATAACATTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTTTAGTGTAGTCCCAACTGTCATTGTCATTCCTAATAACATTTA  930

seq1  GACGAGTTGGCTGTGGAAAGTGAAGATAAGTAAGTTTAAATTGAATACCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGTTGGCTGTGGAAAGTGAAGATAAGTAAGTTTAAATTGAATACCC  980

seq1  AAGTATAAATATTCCTTTGGTAGACTGTCGAAAGAAATGCTTACCCTTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATATTCCTTTGGTAGACTGTCGAAAGAAATGCTTACCCTTGC  1030

seq1  ATATTCAATTTTTAGTGTGCAACATCCGGCATATATATCAGCTCCATTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAATTTTTAGTGTGCAACATCCGGCATATATATCAGCTCCATTGA  1080

seq1  GTGCTGCTTTAGCCTTCTGGGCGCAAAGGACTGACTCAAACGTAAGGCTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTTAGCCTTCTGGGCGCAAAGGACTGACTCAAACGTAAGGCTT  1130

seq1  CATTAAGGAAATGTGGCTGAAGAATTC  1171
      |||||||||||||||||||||||||||
seq2  CATTAAGGAAATGTGGCTGAAGAATTC  1157