BAC Information

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BAC

Clone NameB6Ng01-256F14
Chromosome17 (Build37)
Map Location 80,352,837 - 80,448,237
singlet/doubletdoublet
Overlap geneHnrpll
Upstream genePrkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
Downstream geneGpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256F14.bB6Ng01-256F14.g
ACCGA062330GA062331
length1,1021,111
definitionB6Ng01-256F14.b B6Ng01-256F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,352,837 - 80,353,939)(80,447,116 - 80,448,237)
sequence
gaattctgggatggacgggcagcttgccccttcctttaagcagtgaagat
gagatacaaagcaagcgcactgagggtgagattaaagaggtcagttcgat
ggaaacacagcccctgcccgcctcttctgcatcactcgcagctcagatgg
gcacgtacattctctccagaatgcgactgagaagcctccaaaattctttc
tccatccagatgcccaatctcaaatctgttcttaaaaagccacattcttt
tactcaagattttgcatttggcagcattgctagacgggggcctcagtacc
atttaggtttcagtggaaaatcaatgctggtctccaggctgcagttcctc
ttcttggatctgagaaacggattctcccctctgtctctctagctgtagac
tttccctgcatcaacacaaagaccttacaggctccagctctggactattc
tgtgtccactttatatccctagggaactctctccagagctgagctttagt
tagatcccaggcctcatccaatcttgatctctttttctagggcatcaccc
atgctgtgctttgaagatgagatgcccctgcatcgtctcatgttttgaac
acttggcctccaactgattggggagtgtagaaaccttaaagggtaaagca
taactgggtaggtgagtcactgggtgcttgccttgggaggttctacctgg
tcccagccatggtcctctgccacatgtttctacccccatgatggtctgtc
tctctgtaagcccagaatctacgaagccaaggactatgcactgaagcccc
tgaaaccgtgatctaaaatacatcccctcccccgcccttgcttacatgaa
gtgtttttgtcatgaaggatgaacaactaactcaatgaacatctaacttg
atccatcaacaaaaaccatttttccaactgagcatgaagctcttaagtgt
tttggcttttggtttttagtttttcattagctaacttagctaggcctcat
tatatgcttaggacttctcttggctgttgaacacagaggagtaggacaaa
tagccaaccctggcatccattagtctgtaggaatactatgaactggacca
ta
gaattcttcagccacatttccttaatgaagccttacgtttgagtcagtcc
tttgcgcccagaaggctaaagcagcactcaatggagctgatatatatgcc
ggatgttgcacactaaaaattgaatatgcaagggtaagcatttctttcga
cagtctaccaaaggaatatttatacttgggtattcaatttaaacttactt
atcttcactttccacagccaactcgtctaaatgttattaggaatgacaat
gacagttgggactacactaaaccttatttgggaagacgaggtaggtattt
tacgaattttagaatgtactgagatctgctgagaaactttacaagcagtc
gcattcttttttttctgagatgagctagttaattaaaatgaaaatcttgt
tgaatgcttttgttacaaaagtccgtgtaatgctggaaattaaccttgga
cattagtgccccctactggtacctgctgagcttatttatatttagttcaa
caaggagccctcacatacaggcacgcccgcagttcaaggacttgcatttc
tccaagcagctctctctctttggaggagaggaaactgattcagaatattc
cttacaaactgcaaacttgcacactgcttctctatggaaaggacttttcc
cccaagctggacgaggcattcagaaggctagaggactccggcaggctgac
tctacacttcatcatgcacaacaccggcatcagcaaagccctctgaaaaa
ctcagacttgcaattcaccttgactgcatactacatgcatcatcagccca
agtttgtaaaggacgacatttaacagtacttcagacttgcatggggatga
acaccatgatagactgtgcccatttattcaagttgtatgtatactgatcg
gatttcccttaaggttccagttgtagagtttttatttatgaaaactagac
tttatgtaatgttgtaagtttactgcccaattgatgtactgtatcagcta
gatttaaattgttcatggattttaaccagggtcagttatctacacacctt
tggggatgatatgcctaccaatcacacagacgtgaaagatctgtggtgaa
tggtgtggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80352837_80353939
seq2: B6Ng01-256F14.b_42_1143

seq1  GAATTCTGGGATGGACGGGCAGCTTGCCCCTTCCTTTAAGCAGTGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGATGGACGGGCAGCTTGCCCCTTCCTTTAAGCAGTGAAGAT  50

seq1  GAGATACAAAGCAAGCGCACTGAGGGTGAGATTAAAGAGGTCAGTTCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAAAGCAAGCGCACTGAGGGTGAGATTAAAGAGGTCAGTTCGAT  100

seq1  GGAAACACAGCCCCTGCCCGCCTCTTCTGCATCACTCGCAGCTCAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGCCCCTGCCCGCCTCTTCTGCATCACTCGCAGCTCAGATGG  150

seq1  GCACGTACATTCTCTCCAGAATGCGACTGAGAAGCCTCCAAAATTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTACATTCTCTCCAGAATGCGACTGAGAAGCCTCCAAAATTCTTTC  200

seq1  TCCATCCAGATGCCCAATCTCAAATCTGTTCTTAAAAAGCCACATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAGATGCCCAATCTCAAATCTGTTCTTAAAAAGCCACATTCTTT  250

seq1  TACTCAAGATTTTGCATTTGGCAGCATTGCTAGACGGGGGCCTCAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGATTTTGCATTTGGCAGCATTGCTAGACGGGGGCCTCAGTACC  300

seq1  ATTTAGGTTTCAGTGGAAAATCAATGCTGGTCTCCAGGCTGCAGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTTTCAGTGGAAAATCAATGCTGGTCTCCAGGCTGCAGTTCCTC  350

seq1  TTCTTGGATCTGAGAAACGGATTCTCCCCTCTGTCTCTCTAGCTGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATCTGAGAAACGGATTCTCCCCTCTGTCTCTCTAGCTGTAGAC  400

seq1  TTTCCCTGCATCAACACAAAGACCTTACAGGCTCCAGCTCTGGACTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCATCAACACAAAGACCTTACAGGCTCCAGCTCTGGACTATTC  450

seq1  TGTGTCCACTTTATATCCCTAGGGAACTCTCTCCAGAGCTGAGCTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACTTTATATCCCTAGGGAACTCTCTCCAGAGCTGAGCTTTAGT  500

seq1  TAGATCCCAGGCCTCATCCAATCTTGATCTCTTTTTCTAGGGCATCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCAGGCCTCATCCAATCTTGATCTCTTTTTCTAGGGCATCACCC  550

seq1  ATGCTGTGCTTTGAAGATGAGATGCCCCTGCATCGTCTCATGTTTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCTTTGAAGATGAGATGCCCCTGCATCGTCTCATGTTTTGAAC  600

seq1  ACTTGGCCTCCAACTGATTGGGGAGTGTAGAAACCTTAAAGGGTAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCTCCAACTGATTGGGGAGTGTAGAAACCTTAAAGGGTAAAGCA  650

seq1  TAACTGGGTAGGTGAGTCACTGGGTGCTTGCCTTGGGAGGTTCTACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGTAGGTGAGTCACTGGGTGCTTGCCTTGGGAGGTTCTACCTGG  700

seq1  TCCCAGCCATGGTCCTCTGCCACATGTTTCTACCCCCATGATGGTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCATGGTCCTCTGCCACATGTTTCTACCCCCATGATGGTCTGTC  750

seq1  TCTCTGTAAGCCCAGAATCTACGAAGCCAAGGACTATGCACTGAAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAAGCCCAGAATCTACGAAGCCAAGGACTATGCACTGAAGCCCC  800

seq1  TGAAACCGTGATCTAAAATACATCCCCTCCCCCGCCCTTGCTTACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGTGATCTAAAATACATCCCCTCCCCCGCCCTTGCTTACATGAA  850

seq1  GTGTTTTTGTCATGAAGGATGAACAACTAACTCAATGAACATCTAACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGTCATGAAGGATGAACAACTAACTCAATGAACATCTAACTTG  900

seq1  ATCCATCAAACAAAAAACCATTTTCCAACTGAGCATGAAAGCTCTTAAGT  950
      ||||||| |||||||| |  ||||||||||||||||| ||||||||||||
seq2  ATCCATC-AACAAAAACCATTTTTCCAACTGAGCATG-AAGCTCTTAAGT  948

seq1  GTTTTGGCTTTTGGTTTTTAGTTTTTCATTAGCTAACTTAGCTAAGCCTC  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTTGGCTTTTGGTTTTTAGTTTTTCATTAGCTAACTTAGCTAGGCCTC  998

seq1  ATTATATGCTTAGAACTTCTCTTGGCTGTGGAACACAAAGGAAGTAAGAC  1050
      ||||||||||||| ||||||||||||||| ||||||| ||| |||| |||
seq2  ATTATATGCTTAGGACTTCTCTTGGCTGTTGAACACAGAGG-AGTAGGAC  1047

seq1  AAAATAGCAAACCCT-GCATCCTTTAGTCTGTAGGGAATACAA--GACT-  1096
       ||||||| |||||| |||||| |||||||||| ||||||| |   ||| 
seq2  -AAATAGCCAACCCTGGCATCCATTAGTCTGTA-GGAATACTATGAACTG  1095

seq1  GACCATA  1103
      |||||||
seq2  GACCATA  1102

seq1: chr17_80447116_80448237
seq2: B6Ng01-256F14.g_65_1175 (reverse)

seq1  AAACCACACCTTTCTACCCACAGATCTTTAACGTCTGTGTGAATTGGTTA  50
      |||||||||| |||   |||||||||||| ||||||||||| ||||| ||
seq2  AAACCACACCATTC--ACCACAGATCTTTCACGTCTGTGTG-ATTGG-TA  46

seq1  AGCATTATCAATCCCCAAGGTGTGTAGATAAACTGACCCCTGGTTAAAAA  100
       ||| |||||  ||| ||||||||||||| |||||| |||||||||||| 
seq2  GGCA-TATCATCCCCAAAGGTGTGTAGAT-AACTGA-CCCTGGTTAAAAT  93

seq1  CCAATTAACAATTTAAAATCTAAGCTGAATACAGTTACATCAA-TGGGCA  149
      || || |||||||| |||||| ||||| |||||| |||||||| ||||||
seq2  CC-ATGAACAATTT-AAATCT-AGCTG-ATACAG-TACATCAATTGGGCA  138

seq1  GTAAACTTTACAACATTACATAAAGTCTAGTTTTCATAAATAAAAACTCT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAC-TTACAACATTACATAAAGTCTAGTTTTCATAAATAAAAACTCT  187

seq1  ACAACTGGAACCTTAAGGGAAATCCGATCAGTATACATACAACTTGAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGAACCTTAAGGGAAATCCGATCAGTATACATACAACTTGAATA  237

seq1  AATGGGCACAGTCTATCATGGTGTTCAT-CCCATGCAAGTCTGAAGTACT  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGGGCACAGTCTATCATGGTGTTCATCCCCATGCAAGTCTGAAGTACT  287

seq1  GTTAAATGTCGTCCTTTACAAACTTGGGCTGATGATGCATGTAGTATGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTCGTCCTTTACAAACTTGGGCTGATGATGCATGTAGTATGCA  337

seq1  GTCAAGGTGAATTGCAAGTCTGAGTTTTTCAGAGGGCTTTGCTGATGCCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTGAATTGCAAGTCTGAGTTTTTCAGAGGGCTTTGCTGATGCCG  387

seq1  GTGTTGTGCATGATGAAGTGTAGAGTCAGCCTGCCGGAGTCCTCTAGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGCATGATGAAGTGTAGAGTCAGCCTGCCGGAGTCCTCTAGCCT  437

seq1  TCTGAATGCCTCGTCCAGCTTGGGGGAAAAGTCCTTTCCATAGAGAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGCCTCGTCCAGCTTGGGGGAAAAGTCCTTTCCATAGAGAAGCA  487

seq1  GTGTGCAAGTTTGCAGTTTGTAAGGAATATTCTGAATCAGTTTCCTCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAGTTTGCAGTTTGTAAGGAATATTCTGAATCAGTTTCCTCTCC  537

seq1  TCCAAAGAGAGAGAGCTGCTTGGAGAAATGCAAGTCCTTGAACTGCGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAGAGAGAGCTGCTTGGAGAAATGCAAGTCCTTGAACTGCGGGC  587

seq1  GTGCCTGTATGTGAGGGCTCCTTGTTGAACTAAATATAAATAAGCTCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTATGTGAGGGCTCCTTGTTGAACTAAATATAAATAAGCTCAGC  637

seq1  AGGTACCAGTAGGGGGCACTAATGTCCAAGGTTAATTTCCAGCATTACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCAGTAGGGGGCACTAATGTCCAAGGTTAATTTCCAGCATTACAC  687

seq1  GGACTTTTGTAACAAAAGCATTCAACAAGATTTTCATTTTAATTAACTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGTAACAAAAGCATTCAACAAGATTTTCATTTTAATTAACTAG  737

seq1  CTCATCTCAGAAAAAAAAGAATGCGACTGCTTGTAAAGTTTCTCAGCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAGAAAAAAAAGAATGCGACTGCTTGTAAAGTTTCTCAGCAGA  787

seq1  TCTCAGTACATTCTAAAATTCGTAAAATACCTACCTCGTCTTCCCAAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTACATTCTAAAATTCGTAAAATACCTACCTCGTCTTCCCAAATA  837

seq1  AGGTTTAGTGTAGTCCCAACTGTCATTGTCATTCCTAATAACATTTAGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGTGTAGTCCCAACTGTCATTGTCATTCCTAATAACATTTAGAC  887

seq1  GAGTTGGCTGTGGAAAGTGAAGATAAGTAAGTTTAAATTGAATACCCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCTGTGGAAAGTGAAGATAAGTAAGTTTAAATTGAATACCCAAG  937

seq1  TATAAATATTCCTTTGGTAGACTGTCGAAAGAAATGCTTACCCTTGCATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTCCTTTGGTAGACTGTCGAAAGAAATGCTTACCCTTGCATA  987

seq1  TTCAATTTTTAGTGTGCAACATCCGGCATATATATCAGCTCCATTGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTTAGTGTGCAACATCCGGCATATATATCAGCTCCATTGAGTG  1037

seq1  CTGCTTTAGCCTTCTGGGCGCAAAGGACTGACTCAAACGTAAGGCTTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGCCTTCTGGGCGCAAAGGACTGACTCAAACGTAAGGCTTCAT  1087

seq1  TAAGGAAATGTGGCTGAAGAATTC  1122
      ||||||||||||||||||||||||
seq2  TAAGGAAATGTGGCTGAAGAATTC  1111