BAC Information

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BAC

Clone NameB6Ng01-258B20
Chromosome12 (Build37)17 (Build37)
Map Location 81,967,081 - 81,968,26850,434,886 - 50,435,311
singlet/doubletsingletsinglet
Overlap gene4933426M11Rik
Upstream geneLOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B20.bB6Ng01-258B20.g
ACCGA063637GA063638
length1,166313
definitionB6Ng01-258B20.b B6Ng01-258B20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,967,081 - 81,968,268)(50,434,886 - 50,435,311)
sequence
gaattctagccctttctctgagatcctcttccatgtgtactggcctgctt
ctgtgtgggtcctgcctgctttcaggagctggccagactgttcagtatta
attatgccaaggaaatgaaccagttagacacagtctatagagcgccaaga
gtcagtcagaaggtctgagggacttactactcaatggacggaaaatgaaa
aatgaaatagtaaagcaactgtttgcttgccagctgtctgaatgatttgg
ccaccacttagggaactacagcaatattttcactcacttctctcctgttt
aggactttgagccaggtgggtggcagggatgtcagaggtgtatcctttaa
ggggacaaggactcatacttgcattcatcttctggtgtcatagtttctgc
tggacttttagatcctttggcaacttttaaaaaattgctgagctgaaaca
gtagctcagcggggaatgtatactactatgtgtgaggtcctggggttgat
ctgcagtactgccgaaggatcaaataaagggaaagtgaggggggcatttg
ggatagcattggaaatgtaaatgaagaaaatacctaataaaagtaaataa
aaaaaatatttattaaaaaaaaaaggagccgggtgtggtagcgcatgctt
ttaatcccagcacttgggaggcagaggcagaggcaggcggatttctgagt
tcgaggccagtctggtctacaaagtaagttccaggacagccaggactata
cagagaaaccctgtctcgaaaaaccaaaccaaaaaaaaaaaaaaaaaaag
gaaagtgaatgaaattgtctctgatggcatgctgtctagccagcatggat
aagtccctaattcagtcccaaacacctgcccaaaaacagttataaccgca
cttaaatgatgaaacaaagaaaatggcatattttctacctacctctagga
tgtgcaacctgagggcaggattgttttccatctgacacttttccccagcc
agacttgatattaactgcatatagcatctgggtcaggtgggaggctgcaa
gggcacagcttacgaatgtgtcatggggatgttcacatggagagtcaggc
tttcttgctagtcagaaccgctggtgattccagtcactggactgtaagga
cgtgaaagaggaaatg
aactatgtaaccatagacaaccttgaacttctaatcttcctccccacact
tgactgatgagattacaagcttctatctaccattcctggctccttttttt
ttttttttttaagatttatttattgtgtagataacgttttgtatgcatgt
atgcctacacatcagaagagggtgccagatctcattatagatggttgtaa
gccaccatgtggttgctgggaattgaactcaggacctctggaagatcagt
tagtgctcttaaccactgagccatctctccagccccctccttttaatgtg
tgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81967081_81968268
seq2: B6Ng01-258B20.b_47_1212

seq1  GAATTCTAGCCCTTTCTCTGAGATCCTCTTCCATGTGTACTGGCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCCTTTCTCTGAGATCCTCTTCCATGTGTACTGGCCTGCTT  50

seq1  CTGTGTGGGTCCTGCCTGCTTTCAGGAGCTGGCCAGACTGTTCAGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGTCCTGCCTGCTTTCAGGAGCTGGCCAGACTGTTCAGTATTA  100

seq1  ATTATGCCAAGGAAATGAACCAGTTAGACACAGTCTATAGAGCGCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCAAGGAAATGAACCAGTTAGACACAGTCTATAGAGCGCCAAGA  150

seq1  GTCAGTCAGAAGGTCTGAGGGACTTACTACTCAATGGACGGAAAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCAGAAGGTCTGAGGGACTTACTACTCAATGGACGGAAAATGAAA  200

seq1  AATGAAATAGTAAAGCAACTGTTTGCTTGCCAGCTGTCTGAATGATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATAGTAAAGCAACTGTTTGCTTGCCAGCTGTCTGAATGATTTGG  250

seq1  CCACCACTTAGGGAACTACAGCAATATTTTCACTCACTTCTCTCCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTTAGGGAACTACAGCAATATTTTCACTCACTTCTCTCCTGTTT  300

seq1  AGGACTTTGAGCCAGGTGGGTGGCAGGGATGTCAGAGGTGTATCCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGAGCCAGGTGGGTGGCAGGGATGTCAGAGGTGTATCCTTTAA  350

seq1  GGGGACAAGGACTCATACTTGCATTCATCTTCTGGTGTCATAGTTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAGGACTCATACTTGCATTCATCTTCTGGTGTCATAGTTTCTGC  400

seq1  TGGACTTTTAGATCCTTTGGCAACTTTTAAAAAATTGCTGAGCTGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTAGATCCTTTGGCAACTTTTAAAAAATTGCTGAGCTGAAACA  450

seq1  GTAGCTCAGCGGGGAATGTATACTACTATGTGTGAGGTCCTGGGGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGCGGGGAATGTATACTACTATGTGTGAGGTCCTGGGGTTGAT  500

seq1  CTGCAGTACTGCCGAAGGATCAAATAAAGGGAAAGTGAGGGGGGCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTACTGCCGAAGGATCAAATAAAGGGAAAGTGAGGGGGGCATTTG  550

seq1  GGATAGCATTGGAAATGTAAATGAAGAAAATACCTAATAAAAGTAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCATTGGAAATGTAAATGAAGAAAATACCTAATAAAAGTAAATAA  600

seq1  AAAAAATATTTATTAAAAAAAAAAGGAGCCGGGTGTGGTAGCGCATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTATTAAAAAAAAAAGGAGCCGGGTGTGGTAGCGCATGCTT  650

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGT  700

seq1  TCGAGGCCAGTCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGTCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGACTATA  750

seq1  CAGAGAAACCCTGTCTCGAAAAACCAAACCAAAAAAAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||    ||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAACCAAACC----AAAAAAAAAAAAAAAA  796

seq1  AAAGGAAAGTGAATGAAATTGTCTCTGATGGCATGCTGTCTAGCCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTGAATGAAATTGTCTCTGATGGCATGCTGTCTAGCCAGCAT  846

seq1  GGATAAGTCCCTAATTCAGTCCCAAACACCTGCCCAAAAACAGTTATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTCCCTAATTCAGTCCCAAACACCTGCCCAAAAACAGTTATAAC  896

seq1  CGCACTTAAATGATGAAACAAAAGAAAATGGCATATTTTCTACCTACCTC  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGCACTTAAATGATGAAAC-AAAGAAAATGGCATATTTTCTACCTACCTC  945

seq1  TAGGGATGTGCAACCTGAGGGCAGGATTGTTTTCCATCTGACACTTTCCC  1000
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TA-GGATGTGCAACCTGAGGGCAGGATTGTTTTCCATCTGACACTTTTCC  994

seq1  CCAGCCAGACTTGATATTAACTGCATAATAGCATCTGGGTCAGGTGGGAG  1050
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGCCAGACTTGATATTAACTGCAT-ATAGCATCTGGGTCAGGTGGGAG  1043

seq1  GCTGCAAGGGCACAGCTACAGAATGTGGTCCATGGGATGTTCACATGGGA  1100
      |||||||||||||||||   |||||| |||   |||||||||||||||  
seq2  GCTGCAAGGGCACAGCTTACGAATGT-GTCATGGGGATGTTCACATGG--  1090

seq1  AGAAGCCAGGGCCTTTTCCTGCTAGTCAGACACGCCTGTGTGATTCCCAG  1150
      || || ||||    |||| ||||||||||| ||  ||| |||||| ||||
seq2  AG-AGTCAGG---CTTTCTTGCTAGTCAGA-ACCGCTG-GTGATT-CCAG  1133

seq1  TCACTTGGAGCTGTTAGAGGAAGTGAGAAGAGGAAATG  1188
      |||| |||| ||||   |||| |||| |||||||||||
seq2  TCAC-TGGA-CTGT--AAGGACGTGA-AAGAGGAAATG  1166

seq1: chr17_50434886_50435311
seq2: B6Ng01-258B20.g_176_386 (reverse)

seq1  ACACACACACACACACATTCCAAAAGATTATAAAGCATTTACGGTGAATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAATGGCCTGTTTGGATTGTATGAACATTTTATTTTTCTGACTCTTGTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGGTCTTTCAAGACAGGCTTGCTCTGTGTAGTCCTGGAATTCTCTCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGACCAGGCTGGCCTCGAACTTACAGAGACCCACTTGCCTCTGCCTGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCCAGCACTCTC-CGCTCTTTTACTGCTTTAATCGGGGCTGGAGAGAT  249
          || ||| | | | | | || |  |        ||||||||||||||
seq2  ---ACA-CACACACACACACATTAAAAG-----GAGGGGGCTGGAGAGAT  41

seq1  GGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCGAAGGTTCTGAGTTCAA  299
      |||||||  |||||||||||| |||| ||||||  |||| ||||||||||
seq2  GGCTCAGTGGTTAAGAGCACTAACTGATCTTCCAGAGGTCCTGAGTTCAA  91

seq1  ATCCCAGCAACCACATGGTGGCTTACAACCATCCTTAATGACATCTGACT  349
       ||||||||||||||||||||||||||||||||  |||||| ||||| | 
seq2  TTCCCAGCAACCACATGGTGGCTTACAACCATCTATAATGAGATCTGGCA  141

seq1  CCCTCTCCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAAAA-  398
      |||||| ||| |||||    || ||         ||| | |||| |||| 
seq2  CCCTCTTCTGATGTGT----AGGCA---------TACATGCATACAAAAC  178

seq1  ------TAAATAATAAATAAAGTCTTAAAAAAAA  426
            || | |||||||||| ||||||||||||
seq2  GTTATCTACACAATAAATAAA-TCTTAAAAAAAA  211