BAC Information

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BAC

Clone NameB6Ng01-258G03
Chromosome17 (Build37)
Map Location 40,418,821 - 40,547,211
singlet/doubletdoublet
Overlap geneCrisp1
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
Downstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G03.bB6Ng01-258G03.g
ACCGA063834GA063835
length4751,105
definitionB6Ng01-258G03.b B6Ng01-258G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,546,731 - 40,547,211)(40,418,821 - 40,419,439)
sequence
tgctacccatgaaccttcctcttagcctcagagagggtggggactcttgg
gtagccccttacccctatacataaagtctctgcagaattaggtacatcct
ctccagctgaggcagaacaaggcagccctctgctacatatgggcagtggg
ccttgctccagcccgtgtatgctatttagttggtgactcagtctttgaaa
gcttccagggctcaaggttagttgacactgttggtctttctgtgggtttc
tcatcccattcaaggcctacaatccttacccaaacgttttcataaaggtc
tccaacctccctctactgtttgtctgtgttcatctgcatctgtttaaatc
aactactgggaagaagctctcagaagacaattgtgctagactcctgtttt
cttgcccatgggtctcaggttgggtgagttaatgattggccaatgagaag
gatttcctcctcctcctcctcctcc

gaattctcatctgaggaatacagaactacctgaaaaaatgttcagaatcc
ttaatcaacagggaaaagcaaatcaaaataaccctgagattccacctcac
accactcagaatgactaagatcaaaaattcaggtgacagcagatgctggc
aaggatgtggagaaagaggaacactcctccattgttggtgtgattgcaag
cttgtacaaccactcttgaaatcagtctggcagttcttcagaaaattgga
catagtactaccggaggatcccgcaatacctctcctgggcatatttccag
aagatattccaaatgataagaaggacacatcctccactatgttcatagta
gccttacttataatagccagaagctggaaataacccagatgcccctcaac
agatgaatggatacagaaaatgtggtatatttacacaatggagtactact
cagctattaaaaagaatgaatttttgaaatttctagcaaaatggatggac
ctggagggcatcatcctgagtgtggtaacccaaccacaaaagaactcaca
caatatgtcctcactgataagtggatattagcttctgaagcttagaatac
ccaagatataagatacaatttgtgaaacacatgaaactcaagaagaagga
agaccaaagtatggacactttgccccttcttagaattcggaacaaaacct
ccatggaaggagttacagagatagttttcgagctgacaagaggatggacc
atctagagaatgccatatctggacatccatcccataatcaggctccaaac
gctgacagcattgcatacaatagcaagattttgctgaaaggacccagata
tagctgtcccttgtgagactatgctggggcctagcaaacacagaagtgga
tgcttacagtcagctattgcatagatcacagggcccccaatggaggagct
agagaaagtacccaaggagctaagggatctgcaatactaaatacaattga
ttccaagaacacatcaagatatctctgtggtatttcttgcccaagtagct
gtataaaaacataccacactcagttattaaattatagctatatgcttaga
tggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40546731_40547211
seq2: B6Ng01-258G03.b_44_524 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAAATCCTTCTCATTGGCCAATCATTAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGAAATCCTTCTCATTGGCCAATCATTAACTC  50

seq1  ACCCAACCTGAGACCCATGGGCAAGAAAACAGGAGTCTAGCACAATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCTGAGACCCATGGGCAAGAAAACAGGAGTCTAGCACAATTGTC  100

seq1  TTCTGAGAGCTTCTTCCCAGTAGTTGATTTAAACAGATGCAGATGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGCTTCTTCCCAGTAGTTGATTTAAACAGATGCAGATGAACAC  150

seq1  AGACAAACAGTAGAGGGAGGTTGGAGACCTTTATGAAAACGTTTGGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACAGTAGAGGGAGGTTGGAGACCTTTATGAAAACGTTTGGGTAA  200

seq1  GGATTGTAGGCCTTGAATGGGATGAGAAACCCACAGAAAGACCAACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAGGCCTTGAATGGGATGAGAAACCCACAGAAAGACCAACAGTG  250

seq1  TCAACTAACCTTGAGCCCTGGAAGCTTTCAAAGACTGAGTCACCAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAACCTTGAGCCCTGGAAGCTTTCAAAGACTGAGTCACCAACTAA  300

seq1  ATAGCATACACGGGCTGGAGCAAGGCCCACTGCCCATATGTAGCAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATACACGGGCTGGAGCAAGGCCCACTGCCCATATGTAGCAGAGGG  350

seq1  CTGCCTTGTTCTGCCTCAGCTGGAGAGGATGTACCTAATTCTGCAGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGTTCTGCCTCAGCTGGAGAGGATGTACCTAATTCTGCAGAGAC  400

seq1  TTTATGTATAGGGGTAAGGGGCTACCCAAGAGTCCCCACCCTCTCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATAGGGGTAAGGGGCTACCCAAGAGTCCCCACCCTCTCTGAGG  450

seq1  CTAAGAGGAAGGTTCATGGGTAGCAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  CTAAGAGGAAGGTTCATGGGTAGCAGAATTC  481


seq1: chr17_40418821_40419439
seq2: B6Ng01-258G03.g_562_1170

seq1  GGACCTGGAGGGCATCATCCTGAGTGTGGTAACCCAACCACAAAAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGAGGGCATCATCCTGAGTGTGGTAACCCAACCACAAAAGAACT  50

seq1  CACACAATATGTCCTCACTGATAAGTGGATATTAGCTTCTGAAGCTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATATGTCCTCACTGATAAGTGGATATTAGCTTCTGAAGCTTAGA  100

seq1  ATACCCAAGATATAAGATACAATTTGTGAAACACATGAAACTCAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGATATAAGATACAATTTGTGAAACACATGAAACTCAAGAAGA  150

seq1  AGGAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTCGGAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTCGGAACAAA  200

seq1  ACCTCCATGGAAGGAGTTACAGAGATAGTTTTCGAGCTGACAAGAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGGAAGGAGTTACAGAGATAGTTTTCGAGCTGACAAGAGGATG  250

seq1  GACCATCTAGAGAATGCCATATCTGGACATCCATCCCATAATCAGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTAGAGAATGCCATATCTGGACATCCATCCCATAATCAGGCTCC  300

seq1  AAACGCTGACAGCATTGCATACAATAGCAAGATTTTGCTGAAAGGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTGACAGCATTGCATACAATAGCAAGATTTTGCTGAAAGGACCCA  350

seq1  GATATAGCTGTCCCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCTGTCCCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAG  400

seq1  TGGATGCTTACAGTCAGCTATTGCATAGATCACAGGGCCCCCAATGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTTACAGTCAGCTATTGCATAGATCACAGGGCCCCCAATGGAGG  450

seq1  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATACTAAATACA  500
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AGCTAGAGAAAGTACCCAAGGAGCT-AAGGGATCTGCAATACTAAATAC-  498

seq1  AATTGATTCCAAGAACACATCAAAGATATCTCTTGTGGTAATTTCTTGCC  550
      ||||||||||||||||||||| |||||||||| |||||| ||||||||||
seq2  AATTGATTCCAAGAACACATC-AAGATATCTC-TGTGGT-ATTTCTTGCC  545

seq1  CAAGTAAGCCTGTATAAAAACATACACAACTCAGTTATTATATTTATAAG  600
      ||||||   ||||||||||||||||   |||||||||||| | |||| ||
seq2  CAAGTA--GCTGTATAAAAACATACCACACTCAGTTATTA-AATTAT-AG  591

seq1  CTATATGCCTAGATTGGGA  619
      |||||||| |||| |||||
seq2  CTATATGCTTAGA-TGGGA  609


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