BAC Information

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BAC

Clone NameB6Ng01-258I15
Chromosome17 (Build37)
Map Location 21,329,914 - 21,331,096
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666
Downstream geneEG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I15.bB6Ng01-258I15.g
ACCGA063952GA063953
length1,2251,181
definitionB6Ng01-258I15.b B6Ng01-258I15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttttttccttttttcaaatagatttatttctcaggtaatgta
tcttgattcactctctcttctcctcccagttcttccctatttcctgtcac
attcacataacactctctgtctgccatttggaaaaccacaagatttctaa
ggaattaacaatagaatataatattaaatataataaaagttctatagaaa
actaacacattgaagttgtacaaagtaagcaaacagaagggaataagcaa
aggaaaaggaacagaatctaatacacactcaatgacacactcaagattaa
ataaaaacactaaactgaaagtcacaatattcatgcaaaggacctgttgc
agacccatgcagaccatgtgcatgctgccatagtgtctgtgaatatgtat
gagctttgaccatgttgctgtagagggtcttgctttctttgtgtcctcca
tcctctttggatcttacactctttttgctttctcttccagaaaatgttgt
caacactgaggggtgggatttgtcgaaggcgctttatttacggctgagtg
ttccaaggtttcacactctttgtaatatctacctgtaagtctctatgtct
attcccatgtgctgctgtagtgatagagaatgcaaaaaaaaaaatatcac
cagtaaaaaaactttcataaaggataaagcctgagaatccagtaatatat
atcagacagtgaaacagtgcagatagtaatgattatgtaataggagatac
agctcaattcagaccattaatacaaaggaaggtaatctattcctaaaggt
ggagagggctgaggaaagataaggtgtttctggggtttgtttgtgttctg
ttctgatctgatacatatatgctaaaatagtactgacaactatgttgctt
ggtgtactggctagttttgtgtcaacttgacacagctggagttaccacag
agaaaggagcttcagttgaggaaatgcctccatgagatccagctgtaagg
cattttctcaatagtgatcaaagggggaaaaggcccttggtggggtggac
catctctgggcctggtagtcttgggtcaattagaaaagcagcttgagcag
caggaaagccagcagtaagacattcctcatggctttcggcatcgctctgc
ttcgacctgctgaattccagcctgaactctggagtgacagcaactgaaga
ttatagccaatcaaacccctttttc
gaattcatcagtggatccaggcacagtcaacattgtaagattgtgacctg
acatcatcatctgcaaatttcacactcaagaactggacaatcaggtcatt
ttcaggaagtttttgttgttttctggttcccatttatagctatccttaac
tcaaggtgccctgtgggctaccaggtagatatgactggaataactgataa
atttattactcttatgatctaggctctggaaatacccccacccccaatac
aggcccagagatgctctagtttcctaggctgttcttcatctatccatgcc
aatagtcagccgtagttgttgtactggctgatcttcacaaacaggcaact
ccatctccctagaggactacatgcacaccacatacctatacctgcacttg
tgatacagagcagactctagtcattatgaactgctgggtgagcatgcaag
catgggacagaaatcctaatgtagtaaggccaaggacactctcacattca
gtacacattggctgacctcattgtgatgtccagtggccactggctagaga
atgttattgtccagtatcactggctgaccttatccaggtgttcagtagcc
aggggctgactgcaccttgatgtccagggtttgttgctttcttcttttta
gaaatatccctttgcatttctctctcatttttgtcccatcatccctgtag
actgctatatcaagggtgtatttagtgttaactgttttataaacccttct
tgctcgtctgatgtgtgtgtgtttgatttttacttgcctgggtatacttc
tacttgtataataaatattaatgatcctcccttttgtttgctttgggatt
ctattcatgtcttcaatattcaaaatcattcatgttttctagtatttctt
ggttttactgctaaaagttaacctgttgttccatctggtcttattgcaag
caatggcaataagctgaaactgaatttaacatctgtcacatgcttcccat
atctttgggattataagagaaagattaggaatgatgtttgatagggaaga
gaatagaaagaagggagaaggagctgctgaaggacattgaatttgaggga
agatggctcttttgctactgtaggttattttttcttagttagaacaagga
caggcatgctacccttgcttaaggacaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21329914_21331096
seq2: B6Ng01-258I15.g_67_1247

seq1  GAATTCATCAGTGGATCCAGGCACAGTCAACATTGTAAGATTGTGACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGGATCCAGGCACAGTCAACATTGTAAGATTGTGACCTG  50

seq1  ACATCATCATCTGCAAATTTCACACTCAAGAACTGGACAATCAGGTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCATCTGCAAATTTCACACTCAAGAACTGGACAATCAGGTCATT  100

seq1  TTCAGGAAGTTTTTGTTGTTTTCTGGTTCCCATTTATAGCTATCCTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGTTTTTGTTGTTTTCTGGTTCCCATTTATAGCTATCCTTAAC  150

seq1  TCAAGGTGCCCTGTGGGCTACCAGGTAGATATGACTGGAATAACTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGCCCTGTGGGCTACCAGGTAGATATGACTGGAATAACTGATAA  200

seq1  ATTTATTACTCTTATGATCTAGGCTCTGGAAATACCCCCACCCCCAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTACTCTTATGATCTAGGCTCTGGAAATACCCCCACCCCCAATAC  250

seq1  AGGCCCAGAGATGCTCTAGTTTCCTAGGCTGTTCTTCATCTATCCATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGAGATGCTCTAGTTTCCTAGGCTGTTCTTCATCTATCCATGCC  300

seq1  AATAGTCAGCCGTAGTTGTTGTACTGGCTGATCTTCACAAACAGGCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAGCCGTAGTTGTTGTACTGGCTGATCTTCACAAACAGGCAACT  350

seq1  CCATCTCCCTAGAGGACTACATGCACACCACATACCTATACCTGCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCCTAGAGGACTACATGCACACCACATACCTATACCTGCACTTG  400

seq1  TGATACAGAGCAGACTCTAGTCATTATGAACTGCTGGGTGAGCATGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGAGCAGACTCTAGTCATTATGAACTGCTGGGTGAGCATGCAAG  450

seq1  CATGGGACAGAAATCCTAATGTAGTAAGGCCAAGGACACTCTCACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACAGAAATCCTAATGTAGTAAGGCCAAGGACACTCTCACATTCA  500

seq1  GTACACATTGGCTGACCTCATTGTGATGTCCAGTGGCCACTGGCTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATTGGCTGACCTCATTGTGATGTCCAGTGGCCACTGGCTAGAGA  550

seq1  ATGTTATTGTCCAGTATCACTGGCTGACCTTATCCAGGTGTTCAGTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGTCCAGTATCACTGGCTGACCTTATCCAGGTGTTCAGTAGCC  600

seq1  AGGGGCTGACTGCACCTTGATGTCCAGGGTTTGTTGCTTTCTTCTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGACTGCACCTTGATGTCCAGGGTTTGTTGCTTTCTTCTTTTTA  650

seq1  GAAATATCCCTTTGCATTTCTCTCTCATTTTTGTCCCATCATCCCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCCCTTTGCATTTCTCTCTCATTTTTGTCCCATCATCCCTGTAG  700

seq1  ACTGCTATATCAAGGGTGTATTTAGTGTTAACTGTTTTATAAACCCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATATCAAGGGTGTATTTAGTGTTAACTGTTTTATAAACCCTTCT  750

seq1  TGCTCGTCTGATGTGTGTGTGTTTGATTTTTACTTGCCTGGGTATACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTCTGATGTGTGTGTGTTTGATTTTTACTTGCCTGGGTATACTTC  800

seq1  TACTTGTATAATAAATATTAATGATCCTCCCTTTTGTTTGCTTTGGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTATAATAAATATTAATGATCCTCCCTTTTGTTTGCTTTGGGATT  850

seq1  CTATTCATGTCTTCAATATTCAAAATCATTCATGTTTTCTAGTATTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATGTCTTCAATATTCAAAATCATTCATGTTTTCTAGTATTTCTT  900

seq1  GGTTTTACTGCTAAAAGTTAACCTGTTG-TCCATCTGGTCTTATTGCAAG  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTTTACTGCTAAAAGTTAACCTGTTGTTCCATCTGGTCTTATTGCAAG  950

seq1  CAATGGC-ATAAGCTGAAACTGAA-TTAACATCTGTCACATGCTTCCCAT  997
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CAATGGCAATAAGCTGAAACTGAATTTAACATCTGTCACATGCTTCCCAT  1000

seq1  ATCTTTGGAATTATAAAGAAGAAAGAATAGGAATGATGTTTGATAGGGAA  1047
      |||||||| |||||||   ||||||| |||||||||||||||||||||||
seq2  ATCTTTGGGATTATAA--GAGAAAGATTAGGAATGATGTTTGATAGGGAA  1048

seq1  GAGGAATAAGAAAGA--GGAGAAAGAGCTTGCTTGAGAGGACATGACATT  1095
      || |||| |||||||  |||||| |||| ||| ||| |||||||   |||
seq2  GA-GAAT-AGAAAGAAGGGAGAAGGAGC-TGC-TGA-AGGACATTGAATT  1093

seq1  GGAGGGGAAGATGCCTC-TTTGCTACTGTAGTGTATTTTTCTATAGTTTA  1144
       || ||||||||| ||| |||||||||||||  |||||||   ||| |||
seq2  TGA-GGGAAGATGGCTCTTTTGCTACTGTAGGTTATTTTTTCTTAG-TTA  1141

seq1  GAAACAGAGCAGGGCATGCTACCC-TGC-TGAGGACACCCA  1183
      |||  ||  || |||||||||||| ||| | ||||||||||
seq2  GAACAAGGACA-GGCATGCTACCCTTGCTTAAGGACACCCA  1181