BAC Information

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BAC

Clone NameB6Ng01-259A24
Chromosome7 (Build37)17 (Build37)
Map Location 134,319,045 - 134,319,34156,973,489 - 56,973,790
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
Downstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259A24.bB6Ng01-259A24.g
ACCGA064344GA064345
length973302
definitionB6Ng01-259A24.b B6Ng01-259A24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,319,045 - 134,319,341)(56,973,489 - 56,973,790)
sequence
gaattcatgaccttcggaagagcatcggcgctcttaaatgctgagccatc
tctccagcccaattcaaatatctttagatgacctacattcataagcactg
tgtctgttcctttcacatcttctacataccacagggatctctttttttaa
atttatttatttatttattatatgtaagtacacttcagacactccagaag
agggcatcagatctcattacagatggttatgagccaccatgtggttcctg
ggatttgaactcaggacaattggaagagcagtcagtgctcttaacagctg
aggcatctctccagggatctttcttcatgacttatgattaaagaagaatt
tatccttagggactgtttgtctacagtcttttagggagtgacctgatctt
tcacaggcacagcaatgggcgttttgtgtttttacgtctttcgaaattgt
ttgtccaaccacaaatggattgtgagcattagatttaatatctgcagcag
ttttgtttgtttgttttttttttccgagacagggtttccctgtatagccc
tggctatcctggaactcactttgtagatcaggctggcctcgaactcagaa
atctgcctgcctctgcctcccaagtgctgggattaaaggtgtgcgccacc
acgcccagcttgcagcagttttgatagattcacaaataggtgcagatctg
gcctgatagcctgtttgcatttagcttcagtattcttaaaagctaaatgt
tcaattaaaaattctctaacatttggatctgttatccttctattcagtgc
tgcagtcaatctttgcaaaaagtccctgaaagagtcacttgaccctgaca
atagggtagttggtaactccgtcagcagtgactttcccctttctaaattt
ggagagcttggaccttggaacatccttgtaagtgattcagctggtccctg
ttgaccagccttgtcctaagcat
tttctgtctcttaatcatcatgcttaaagtctttcgttggaagttaagac
aagatttcactgtgtagctgccctggaacgtgctctgtacaccaggctgg
cctcgaactcagagatccacttgagtctgcctcccaagtgctgggattaa
agggatgtgacaccaatacccagctttatattaaaaatagtcttattcta
gccgggcgtggtggcacacgcctttaattccagcactcgggaggcagatg
caggtagatttctgagttcgaggcaagcctggtgttcagagcacgttcca
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134319045_134319341
seq2: B6Ng01-259A24.b_227_704 (reverse)

seq1  AGCTGAGCGTGGTGGTGCAGGCCTTTAATCCCAGCACTTGGGAGGCAGAG  50
      ||||| ||||||||| |||  |||||||||||||||||||||||||||||
seq2  AGCTGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAG  50

seq1  GCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC  100
      |||||| ||||||||||||| ||||||||||| |||||||||||||||||
seq2  GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCC  100

seq1  AGTACAGCCAGGACTACACAGAGAAACCCTGTCTCG------AAAAAC--  142
      || | ||||||| ||| |||| ||||||||||||||      ||||||  
seq2  AGGATAGCCAGGGCTATACAGGGAAACCCTGTCTCGGAAAAAAAAAACAA  150

seq1  -----CAAAA----------------------------------------  147
           |||||                                        
seq2  ACAAACAAAACTGCTGCAGATATTAAATCTAATGCTCACAATCCATTTGT  200

seq1  -------------------AAAGA--------------------------  152
                         |||||                          
seq2  GGTTGGACAAACAATTTCGAAAGACGTAAAAACACAAAACGCCCATTGCT  250

seq1  ---------AAAGA--------------AAAAGA--------AAAAAG--  169
               |||||              ||||||        ||| ||  
seq2  GTGCCTGTGAAAGATCAGGTCACTCCCTAAAAGACTGTAGACAAACAGTC  300

seq1  ------------------------------------AGAAAG--GCCTGG  181
                                          ||||||   |||||
seq2  CCTAAGGATAAATTCTTCTTTAATCATAAGTCATGAAGAAAGATCCCTGG  350

seq1  TGAGATGGCTCAGTGAGTAAGAGCGCTGACTGCTCTTCCGAAGGTCCTGA  231
       |||||| |||||    ||||||| |||||||||||||| |  |||||||
seq2  AGAGATGCCTCAGCTGTTAAGAGCACTGACTGCTCTTCCAATTGTCCTGA  400

seq1  GTTCAAATCCCAGCAACCACATAGTGGCTCACAACC------------AT  269
      ||||||||||||| |||||||| |||||||| ||||            ||
seq2  GTTCAAATCCCAGGAACCACATGGTGGCTCATAACCATCTGTAATGAGAT  450

seq1  CTGACTCCCTCTTCTGGTGTGTCTGAAG  297
      ||||  ||||||||||| ||||||||||
seq2  CTGATGCCCTCTTCTGGAGTGTCTGAAG  478

seq1: chr17_56973489_56973790
seq2: B6Ng01-259A24.g_72_373

seq1  TTTCTGTCTCTTAATCATCATGCTTAAAGTCTTTCGTTGGAAGTTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCTTAATCATCATGCTTAAAGTCTTTCGTTGGAAGTTAAGAC  50

seq1  AAGATTTCACTGTGTAGCTGCCCTGGAACGTGCTCTGTACACCAGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCACTGTGTAGCTGCCCTGGAACGTGCTCTGTACACCAGGCTGG  100

seq1  CCTCGAACTCAGAGATCCACTTGAGTCTGCCTCCCAAGTGCTGGGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAGATCCACTTGAGTCTGCCTCCCAAGTGCTGGGATTAA  150

seq1  AGGGATGTGACACCAATACCCAGCTTTATATTAAAAATAGTCTTATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGACACCAATACCCAGCTTTATATTAAAAATAGTCTTATTCTA  200

seq1  GCCGGGCGTGGTGGCACACGCCTTTAATTCCAGCACTCGGGAGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCGGGCGTGGTGGCACACGCCTTTAATTCCAGCACTCGGGAGGCAGATG  250

seq1  CAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA  300
      |||| ||||||||||||||||||| |||||||| | || ||   ||||||
seq2  CAGGTAGATTTCTGAGTTCGAGGCAAGCCTGGTGTTCAGAGCACGTTCCA  300

seq1  GG  302
      ||
seq2  GG  302