BAC Information

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BAC

Clone NameB6Ng01-259C08
Chromosome17 (Build37)
Map Location 49,824,080 - 49,934,039
singlet/doubletdoublet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C08.bB6Ng01-259C08.g
ACCGA064405GA064406
length1,1071,096
definitionB6Ng01-259C08.b B6Ng01-259C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,824,080 - 49,825,190)(49,932,950 - 49,934,039)
sequence
gaattcttttcctccatactaagtgcccgacttctttccccttcacttct
aatattttgccatctcagagcttattttctgacttcaccttcgaatatta
cttcatgcctcgcacatctgttggtgaacctggaggtcaggagagtcttc
catgtccctggacaatgaatttactcaaagcacctttagctagtcggagg
caaaatcgaaggcataaagggatctactcaaacgagaacccagctcatcc
ctgtccgttcagagcgccttccgactgcctgcatttccaatatgctcact
tctgagtcttattaaaaataaaagaagtatgcctgttttcactaggggaa
aggagtttttctgcctttgtgggcattgttgaagggtctgcagaagcgtc
atctacaggaaggaagcacacctccagggacacattgcctgcagatgtcc
cgagcaagttacatttccttactgcggttagtatttttaagtgtccacaa
attacatatgaaaaggccagaaacttgcttgaagaatggggaaaaattaa
ttatggtatttgaaaactcttcatttaaaaggtaaccatatcctaaataa
gctttttccttattcacatattttatttttaaaaataactcttctttatt
cttgagaacttcatacatctatagaatgtaaaggacatcccagatttcct
tcctccaactcatccatcttttcctcagtgtgtcatcctccaaacttcat
gtcttcttttttaataactcactaagtctaattagtgctgtgtgtgtgct
cttggttttgaagaccctattgctgacgatgtcatatgctttgcttgcag
gacgtagagaagccagtctcaaactgaccaaaaaaaaggtccctcctgtt
gactagcttccatgatgtctaaaaatactaagcaggctgttgtggtagga
aagtcttcagtggactttctcagggctggaccccacgtgacgcaatgcca
ccctctagacagtgtgcccaccagcacagtagtggcatggcagttatagg
gataacaccattttctgattgggaccttgaggtcattgctcaggaggaaa
ttcctgt

gaattcaccgggttcataaacatgtaaaaaaaatgtacaacttcacttat
aataagagaaaagcacattctagcttataaagatcctacctaacacacag
gaaagcccatcaaactgataagccagtgtgtcggggggctatggggaaac
aagcaacctcagcttctgacgctgggaatgcaaataaacaacaaaagagc
cccaaagagtgcaattccaaaatctccataaaattataaatgcatctaga
ctgtgaaatgcacgtgtttcattctatgaatatatatcaaaatacaaagt
gctattaaatatatacagaataatataaagatgagatttttgtttgtttg
tttgtttgtttaggagctggctctccacataacagaatagtttgcatttg
acaaatgaatgtgtataaacctgggctggagagatggttcattggttaag
agtgcttgcggctcttccatacagtttggattcagttcccagcacccatg
tgggttgatgtaccactgcctctaactccagcttcaggggaatctgatgc
cctcttctggcctccagcagtactgcaaacatgtggtgtacttaaaatac
attctggcatacaaaaagtatctactaaataaaccttaaaaaaaagataa
aaaacatataaggcctattttatgagagtgtacgtgtgtggcatatgaac
acagatgtgtggaaatgcttgttcatttcatacgtgtgtgaagagtctag
aagatggtgttgggtgctcggttctagatctcttatccttatttgaaata
ggatctttcattgaaactggagctaggctggtggccagcctgtctctgct
gtctcccattgcactggggttacaggcatgcctggcattttacacggatg
atgagatgagagtgtacgtttcatgatttcacagcctgtgctctgacctc
ctgagcttcatctctttctctccggcccctccaagaacttcttgcttttt
ttttggacaaccaaagccctggagaagctttgaatcatacacattaatat
ttgtttaagtttggatttggatttttatgtatttatgatttactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49824080_49825190
seq2: B6Ng01-259C08.b_45_1151

seq1  GAATTCTTTTCCTCCATACTAAGTGCCCGACTTCTTTCCCCTTCACTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTCCATACTAAGTGCCCGACTTCTTTCCCCTTCACTTCT  50

seq1  AATATTTTGCCATCTCAGAGCTTATTTTCTGACTTCACCTTCGAATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGCCATCTCAGAGCTTATTTTCTGACTTCACCTTCGAATATTA  100

seq1  CTTCATGCCTCGCACATCTGTTGGTGAACCTGGAGGTCAGGAGAGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCCTCGCACATCTGTTGGTGAACCTGGAGGTCAGGAGAGTCTTC  150

seq1  CATGTCCCTGGACAATGAATTTACTCAAAGCACCTTTAGCTAGTCGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTGGACAATGAATTTACTCAAAGCACCTTTAGCTAGTCGGAGG  200

seq1  CAAAATCGAAGGCATAAAGGGATCTACTCAAACGAGAACCCAGCTCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCGAAGGCATAAAGGGATCTACTCAAACGAGAACCCAGCTCATCC  250

seq1  CTGTCCGTTCAGAGCGCCTTCCGACTGCCTGCATTTCCAATATGCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCGTTCAGAGCGCCTTCCGACTGCCTGCATTTCCAATATGCTCACT  300

seq1  TCTGAGTCTTATTAAAAATAAAAGAAGTATGCCTGTTTTCACTAGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCTTATTAAAAATAAAAGAAGTATGCCTGTTTTCACTAGGGGAA  350

seq1  AGGAGTTTTTCTGCCTTTGTGGGCATTGTTGAAGGGTCTGCAGAAGCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTTCTGCCTTTGTGGGCATTGTTGAAGGGTCTGCAGAAGCGTC  400

seq1  ATCTACAGGAAGGAAGCACACCTCCAGGGACACATTGCCTGCAGATGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGGAAGGAAGCACACCTCCAGGGACACATTGCCTGCAGATGTCC  450

seq1  CGAGCAAGTTACATTTCCTTACTGCGGTTAGTATTTTTAAGTGTCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAAGTTACATTTCCTTACTGCGGTTAGTATTTTTAAGTGTCCACAA  500

seq1  ATTACATATGAAAAGGCCAGAAACTTGCTTGAAGAATGGGGAAAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATGAAAAGGCCAGAAACTTGCTTGAAGAATGGGGAAAAATTAA  550

seq1  TTATGGTATTTGAAAACTCTTCATTTAAAAGGTAACCATATCCTAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTATTTGAAAACTCTTCATTTAAAAGGTAACCATATCCTAAATAA  600

seq1  GCTTTTTCCTTATTCACATATTTTATTTTTAAAAATAACTCTTCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCCTTATTCACATATTTTATTTTTAAAAATAACTCTTCTTTATT  650

seq1  CTTGAGAACTTCATACATCTATAGAATGTAAAGGACATCCCAGATTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAACTTCATACATCTATAGAATGTAAAGGACATCCCAGATTTCCT  700

seq1  TCCTCCAACTCATCCATCTTTTCCTCAGTGTGTCATCCTCCAAACTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACTCATCCATCTTTTCCTCAGTGTGTCATCCTCCAAACTTCAT  750

seq1  GTCTTCTTTTTTAATAACTCACTAAGTCTAATTAGTGCTGTGTGTGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTTTAATAACTCACTAAGTCTAATTAGTGCTGTGTGTGTGCT  800

seq1  CTTGGTTTTGAAGACCCTATTGCTGACGATGTCATATGCTTTGCTTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTTGAAGACCCTATTGCTGACGATGTCATATGCTTTGCTTGCAG  850

seq1  GACGTAGAGAAGCCAGTCTCAAACTGACCAAAAAAAAGGTCCCTCCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGAGAAGCCAGTCTCAAACTGACCAAAAAAAAGGTCCCTCCTGTT  900

seq1  GACTAGCTTCCATGATGTCTAAAAATACTAAGCAGGCTGTTGTGGTAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCTTCCATGATGTCTAAAAATACTAAGCAGGCTGTTGTGGTAGGA  950

seq1  AAGTCTTCAGTGGACTTTCTCAGGGCTGGACCCCACGTGACGCAATGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGTCTTCAGTGGACTTTCTCAGGGCTGGACCCCACGTGACGCAATGCC-  999

seq1  ACCCTCTAGACAAGTTGTGCCCACCAGCACAGTAGTGGCATGGCAGTTAT  1050
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  ACCCTCTAGACA--GTGTGCCCACCAGCACAGTAGTGGCATGGCAGTTAT  1047

seq1  AGGGATAACCAACCAATTTCTGATTGG--ACTTGAGGTCATTGCTCAGGA  1098
      |||||||||  |||| |||||||||||   ||||||||||||||||||||
seq2  AGGGATAAC--ACCATTTTCTGATTGGGACCTTGAGGTCATTGCTCAGGA  1095

seq1  GGGAAATTCCTGT  1111
       ||||||||||||
seq2  -GGAAATTCCTGT  1107


seq1: chr17_49932950_49934039
seq2: B6Ng01-259C08.g_68_1163 (reverse)

seq1  ACAGTAAATCATAAATACATAAAAAATCATAATACAAACTTAAACAAATA  50
      |||||||||||||||||||| |||||||  ||| ||||||||||||||||
seq2  ACAGTAAATCATAAATACAT-AAAAATCCAAATCCAAACTTAAACAAATA  49

seq1  TTAATGTGTATGATTCAAAGC-TCT-CAGGGCTTTGGTTGTCCAAAAAAA  98
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  TTAATGTGTATGATTCAAAGCTTCTCCAGGGCTTTGGTTGTCCAAAAAAA  99

seq1  AAGCA--GAGTTCTTGGAGGGGCCGGAGAG-AAGAGATGAAGCTCAGGAG  145
      |||||   |||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCAAGAAGTTCTTGGAGGGGCCGGAGAGAAAGAGATGAAGCTCAGGAG  149

seq1  GTCAGAGCACAGGCTGTGAAATCATG-AACGTACACTCTCATCTCATCAT  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCAGAGCACAGGCTGTGAAATCATGAAACGTACACTCTCATCTCATCAT  199

seq1  CCGTGTAAAATGCCAGGCATGCCTGTAACCCCAGTGCAATGGGAGACAGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAAAATGCCAGGCATGCCTGTAACCCCAGTGCAATGGGAGACAGC  249

seq1  AGAGACAGGCTGGCCACCAGCCTAGCTCCAGTTTCAATGAAAGATCCTAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGCTGGCCACCAGCCTAGCTCCAGTTTCAATGAAAGATCCTAT  299

seq1  TTCAAATAAGGATAAGAGATCTAGAACCGAGCACCCAACACCATCTTCTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAGGATAAGAGATCTAGAACCGAGCACCCAACACCATCTTCTA  349

seq1  GACTCTTCACACACGTATG-AATGAACAAGCATTTCCACACATCTGTGTT  393
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACTCTTCACACACGTATGAAATGAACAAGCATTTCCACACATCTGTGTT  399

seq1  CATATGCCACACACGTACACTCTCATAAAATAGGCCTTATATGTTTTTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCACACACGTACACTCTCATAAAATAGGCCTTATATGTTTTTTA  449

seq1  TCTTTTTTTTAAGGTTTATTTAGTAGATACTTTTTGTATGCCAGAATGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTAAGGTTTATTTAGTAGATACTTTTTGTATGCCAGAATGTA  499

seq1  TTTTAAGTACACCACATGTTTGCAGTACTGCTGGAGGCCAGAAGAGGGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTACACCACATGTTTGCAGTACTGCTGGAGGCCAGAAGAGGGCA  549

seq1  TCAGATTCCCCTGAAGCTGGAGTTAGAGGCAGTGGTACATCAACCCACAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCCCCTGAAGCTGGAGTTAGAGGCAGTGGTACATCAACCCACAT  599

seq1  GGGTGCTGGGAACTGAATCCAAACTGTATGGAAGAGCCGCAAGCACTCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGGAACTGAATCCAAACTGTATGGAAGAGCCGCAAGCACTCTT  649

seq1  AACCAATGAACCATCTCTCCAGCCCAGGTTTATACACATTCATTTGTCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGAACCATCTCTCCAGCCCAGGTTTATACACATTCATTTGTCAA  699

seq1  ATGCAAACTATTCTGTTATGTGGAGAGCCAGCTCCTAAACAAACAAACAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTATTCTGTTATGTGGAGAGCCAGCTCCTAAACAAACAAACAA  749

seq1  ACAAACAAAAATCTCATCTTTATATTATTCTGTATATATTTAATAGCACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAATCTCATCTTTATATTATTCTGTATATATTTAATAGCACT  799

seq1  TTGTATTTTGATATATATTCATAGAATGAAACACGTGCATTTCACAGTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTGATATATATTCATAGAATGAAACACGTGCATTTCACAGTCT  849

seq1  AGATGCATTTATAATTTTATGGAGATTTTGGAATTGCACTCTTTGGGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATTTATAATTTTATGGAGATTTTGGAATTGCACTCTTTGGGGCT  899

seq1  CTTTTGTTGTTTATTTGCATTCCCAGCGTCAGAAGCTGAGGTTGCTTGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGTTTATTTGCATTCCCAGCGTCAGAAGCTGAGGTTGCTTGTT  949

seq1  TCCCCATAGCCCCCCGACACACTGGCTTATCAGTTTGATGGGCTTTCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATAGCCCCCCGACACACTGGCTTATCAGTTTGATGGGCTTTCCTG  999

seq1  TGTGTTAGGTAGGATCTTTATAAGCTAGAATGTGCTTTTCTCTTATTATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGGTAGGATCTTTATAAGCTAGAATGTGCTTTTCTCTTATTATA  1049

seq1  AGTGAAGTTGTACATTTTTTTTACATGTTTATGAACCCGGTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTTGTACATTTTTTTTACATGTTTATGAACCCGGTGAATTC  1096


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