BAC Information

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BAC

Clone NameB6Ng01-259D06
Chromosome17 (Build37)
Map Location 44,674,847 - 44,827,968
singlet/doubletdoublet
Overlap geneRunx2
Upstream geneLOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneSupt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259D06.bB6Ng01-259D06.g
ACCGA064447GA064448
length4471,051
definitionB6Ng01-259D06.b B6Ng01-259D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,827,517 - 44,827,968)(44,674,847 - 44,675,904)
sequence
ttaccttatgcagaattgtagggattctgtccacagaggagcctcagagt
ttcgaatcagagaggctatttgagtttgatagggacacaggaaacagatt
ggaaggaagacacaggaagtaaggaacatacagaggcacggaagccagct
agagagcacttctacatcccaagtgtgttaaggatgggggtggaagatca
ggaggtgtgcgtgcctctaaaatcaatgttcatatcagggagaagaaagg
ggagcggtctgtgaaggggtctcttaaagcaaagcatgaaataagttgta
ggtcatcagctagcacatgcttactgcatacctactgtgtgccactgctg
tttgatgtctgttggcactctttcaagctttattctagctcagactatac
cacaaagtataacaggaagtgtgtgtgtgtgtgtgttgggggtgggt
gaattctttgaccctgccatccattttactagctagcccaaacctgaaag
atggaatccagagccaccattcaggaagaggaaggtggaccgtgggagac
aaggtcggtgatagattttggaggacaccgagtccaacattactttttaa
aaataagggaaatgaagttttgagatgttattgtataatcctatgaagat
tccacagaactcaggggctggaccagacaccaacaactgcttctatttgc
cttcccttctggacttgtttggaacatttatcactgtgagatctgtgaca
gtggatcctatgttctatttacttaagttatttttttttgaagaagggta
ttgtgtagcctaggctgtcctcaaacacaccgagatgaccttctgatccc
catgtctcaacctccccagtgctaggattatatccatggtccaccacacc
tgttttgtgccgtgctgagaatggaacctagggtttcaagcttgctacgc
aagcactctgcccctgttgtatttacttttattctccccaacctacctaa
gtcagaacttaaatggggatggagcagtaataggttgatctgaatgtcta
caccaatggtctcttcccctgtctacactttccaaaactagggacgttac
aagaagtcaagttgagggtcagagtagccagagttttctatgggctcccc
ctgaaatagatcaagcccttttgagagccatgccaggctgggctgggcag
cggcctgaggcatgcaggaaagctggggggggcatctgaattaggttcac
tgttctgacctcggaggtctctttccatctctaagctttagactccgtga
tataaaagagcttttctttcctaagacacataaggtttcaactagttgaa
tcccttaaagtcaaaggcctctcagacagatccccgtggtctctcaccca
aataaatcacacacatcaaaacaaggctccaaccgtggcacgggatagag
tgttccccaatgtctctcaaatgaactctgatctatcttatgactttcaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44827517_44827968
seq2: B6Ng01-259D06.b_45_496 (reverse)

seq1  CCCACCCCCAACACACACACACACACACTTCCTGTTATACTTTGTGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCAACACACACACACACACACTTCCTGTTATACTTTGTGGTAT  50

seq1  AGTCTGAGCTAGAATAAAGCTTGAAAGAGTGCCAACAGACATCAAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGCTAGAATAAAGCTTGAAAGAGTGCCAACAGACATCAAACAGC  100

seq1  AGTGGCACACAGTAGGTATGCAGTAAGCATGTGCTAGCTGATGACCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACACAGTAGGTATGCAGTAAGCATGTGCTAGCTGATGACCTACA  150

seq1  ACTTATTTCATGCTTTGCTTTAAGAGACCCCTTCACAGACCGCTCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTCATGCTTTGCTTTAAGAGACCCCTTCACAGACCGCTCCCCTT  200

seq1  TCTTCTCCCTGATATGAACATTGATTTTAGAGGCACGCACACCTCCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCTGATATGAACATTGATTTTAGAGGCACGCACACCTCCTGAT  250

seq1  CTTCCACCCCCATCCTTAACACACTTGGGATGTAGAAGTGCTCTCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCCCCATCCTTAACACACTTGGGATGTAGAAGTGCTCTCTAGCT  300

seq1  GGCTTCCGTGCCTCTGTATGTTCCTTACTTCCTGTGTCTTCCTTCCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGTGCCTCTGTATGTTCCTTACTTCCTGTGTCTTCCTTCCAATC  350

seq1  TGTTTCCTGTGTCCCTATCAAACTCAAATAGCCTCTCTGATTCGAAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTGTCCCTATCAAACTCAAATAGCCTCTCTGATTCGAAACTC  400

seq1  TGAGGCTCCTCTGTGGACAGAATCCCTACAATTCTGCATAAGGTAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCCTCTGTGGACAGAATCCCTACAATTCTGCATAAGGTAAGAAT  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr17_44674847_44675904
seq2: B6Ng01-259D06.g_68_1118

seq1  GAATTCTTTGACCCTGCCATCCATTTTACTAGCTAGCCCAAACCTGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACCCTGCCATCCATTTTACTAGCTAGCCCAAACCTGAAAG  50

seq1  ATGGAATCCAGAGCCACCATTCAGGAAGAGGAAGGTGGACCGTGGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCCAGAGCCACCATTCAGGAAGAGGAAGGTGGACCGTGGGAGAC  100

seq1  AAGGTCGGTGATAGATTTTGGAGGACACCGAGTCCAACATTACTTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCGGTGATAGATTTTGGAGGACACCGAGTCCAACATTACTTTTTAA  150

seq1  AAATAAGGGAAATGAAGTTTTGAGATGTTATTGTATAATCCTATGAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGGAAATGAAGTTTTGAGATGTTATTGTATAATCCTATGAAGAT  200

seq1  TCCACAGAACTCAGGGGCTGGACCAGACACCAACAACTGCTTCTATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAACTCAGGGGCTGGACCAGACACCAACAACTGCTTCTATTTGC  250

seq1  CTTCCCTTCTGGACTTGTTTGGAACATTTATCACTGTGAGATCTGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCTGGACTTGTTTGGAACATTTATCACTGTGAGATCTGTGACA  300

seq1  GTGGATCCTATGTTCTATTTACTTAAGTTATTTTTTTTTGAAGAAGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCCTATGTTCTATTTACTTAAGTTATTTTTTTTTGAAGAAGGGTA  350

seq1  TTGTGTAGCCTAGGCTGTCCTCAAACACACCGAGATGACCTTCTGATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCCTAGGCTGTCCTCAAACACACCGAGATGACCTTCTGATCCC  400

seq1  CATGTCTCAACCTCCCCAGTGCTAGGATTATATCCATGGTCCACCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCAACCTCCCCAGTGCTAGGATTATATCCATGGTCCACCACACC  450

seq1  TGTTTTGTGCCGTGCTGAGAATGGAACCTAGGGTTTCAAGCTTGCTACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGCCGTGCTGAGAATGGAACCTAGGGTTTCAAGCTTGCTACGC  500

seq1  AAGCACTCTGCCCCTGTTGTATTTACTTTTATTCTCCCCAACCTACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGCCCCTGTTGTATTTACTTTTATTCTCCCCAACCTACCTAA  550

seq1  GTCAGAACTTAAATGGGGATGGAGCAGTAATAGGTTGATCTGAATGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACTTAAATGGGGATGGAGCAGTAATAGGTTGATCTGAATGTCTA  600

seq1  CACCAATGGTCTCTTCCCCTGTCTACACTTTCCAAAACTAGGGACGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATGGTCTCTTCCCCTGTCTACACTTTCCAAAACTAGGGACGTTAC  650

seq1  AAGAAGTCAAGTTGAGGGTCAGAGTAGCCAGAGTTTTCTATGGGCTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAAGTTGAGGGTCAGAGTAGCCAGAGTTTTCTATGGGCTCCCC  700

seq1  CTGAAATAGATCAAGCCCTTTTGAGAGCCATGCCAGGCTGGGCTGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAGATCAAGCCCTTTTGAGAGCCATGCCAGGCTGGGCTGGGCAG  750

seq1  CGGCCTGAGGCATGCAGGAAGGCTGGGGGGGGCATCTGAATTAGGTTCAC  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGGCCTGAGGCATGCAGGAAAGCTGGGGGGGGCATCTGAATTAGGTTCAC  800

seq1  TGTTCTGACCTCGGAGGTCTC-TTCCATCTCTAAGCTTTAGACTCCGTGA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTCTGACCTCGGAGGTCTCTTTCCATCTCTAAGCTTTAGACTCCGTGA  850

seq1  TATAAAAGAGC-TTTCTTTCCTAAGACACATAAGGTTTCAACTAGTTGAA  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAGCTTTTCTTTCCTAAGACACATAAGGTTTCAACTAGTTGAA  900

seq1  TCCCTTAAAAGTCAAAGGCCTCTCAAGACAGATCCCCGTGGTCTCTCACC  948
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCTT-AAAGTCAAAGGCCTCTC-AGACAGATCCCCGTGGTCTCTCACC  948

seq1  CAAATAAATCACACACATCAAAACAGGGCTCCAACCTTGGGCACGGGGAA  998
      ||||||||||||||||||||||||| |||||||||| | ||||| |||| 
seq2  CAAATAAATCACACACATCAAAACAAGGCTCCAACCGT-GGCAC-GGGAT  996

seq1  AGAGTGGTCCCCAATGTCTTCTTCCAAATGAACCTCTTGATCTATCTTAG  1048
      |||||| ||||||||||| |||  |||||||| ||| |||||||||||| 
seq2  AGAGTGTTCCCCAATGTC-TCT--CAAATGAA-CTC-TGATCTATCTTA-  1040

seq1  TGAC-TTCAAA  1058
      |||| ||||||
seq2  TGACTTTCAAA  1051