BAC Information

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BAC

Clone NameB6Ng01-260P05
Chromosome17 (Build37)
Map Location 11,344,486 - 11,503,547
singlet/doubletdoublet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P05.bB6Ng01-260P05.g
ACCGA065744GA065745
length1,2071,162
definitionB6Ng01-260P05.b B6Ng01-260P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,344,486 - 11,345,574)(11,502,389 - 11,503,547)
sequence
gaattccaagctcagggtcagcttaaggactaccttggtagggcattggt
gaaggccaggaagcaaagttcaattttgcttaggtatttggcaagtcatt
gctctgagacacctataataaaacaatactgagggaaagcacacagatcc
attcactgactaaagccaggacagatttggagcatttattattacaggat
gccagggttccgggagactacgttttcgtgaacttttcgcctctggactg
catctaggcttttgggcctgtcactggagtcactactggagtggatttag
cagttttcttgattgctatatctgttcaaagcttttctctctaatttatt
gagctgttttctccctactgggctcagtatatgtatcaggttctttcttt
ataagacacttaattttcaaatgttttccctaagtgtgtgggttgacctt
tttacatatcaacagagtgtttcacaaagcagaaaatttaaaatagaatc
aattaataatttttttctctcatggtcacaaattgggagtcatacctaga
aaatgttttcttaacccagggtcattaagattccatttgcttattgatgt
tacatgtttacatttttaaatttacatttatgataatacctggtttaaga
actgtaatgacaaccatttagtatctgacagggaatgttcactgatgcct
tctctatctcacaggttcacaccatggcttatgtacttgggatgtggttt
cttttttatttggctcctttctgtagagactggcactgagttgaggcctt
cttgtctttcctagcatggttattttgagtttccatctaggtcctgatag
ttctgcccttctgattatgtgcccttttggtttaattctctctttgttat
tacccctttacaactcttgaattatgggtaagtttccgctgttgtactct
tatgcatggtggtaattcactctgcagctgtgctcctgccaaaaacactc
tctagtgtggtgttcactcaacactgtagctttcaacgctacagtttgag
ttttagaaactttttctgtgttgttgacatacaccagcaacaaagcttct
agaacgagtcatgtcatattagttacttttcatgacgttaccatagtagc
ttaatggaggattattgggctcaaggtcaaggaagcggtctgttcagcca
aggaaat

gaattcattctcggtttggtttccttctcaccgtgtgacacaaggaaagg
caattaacctctccatttcccatatgtttaatgacacatttatgcagggg
gcttgatattcccaggcgggaaaggcttgcatgcggaagtacaaaggctt
ctgtaaacaatgctcagacagatatcagtctggagcagaacgacctgcgt
aactcaggaagagcattttcagtgtgactccctaatctcccacagtttat
tattgtggggtaatacccttggcttttaaaaaaaacaaaacaaaacaaaa
cattgacaaaagatctactatggtacaagactgctaaattctgtttgttt
ccccagtgaagttttaaagtaatttacttcttaaccaaagaacaaataaa
ttaactcactgcactatagatctattcctatttgcccagttcttgataaa
gcttctaagtggttacatacatgcatacatacatgtgtatataaatatgc
acacacatgtatgtgtatatgatgtcatgaacaatgtgctctgagctttt
cagaactcctgggacaccatgtattctttgtcttgtaatttttcctcaat
atatcagtaaatagaccagatcagcaccatggagagcaaaactaaatggg
ctgagttggggaaatcacagggcagaagcacactgaggaatgagaaagct
caggcagaataaactgtgggttgagaggctgaggtgagcccagcactgcc
tcggcctctgctctgtagacacatgagggctgcatgtgttcactggcttg
agtgctgagctgccaggagatgaagccacacacagagctcttttatgtag
gcctcctagcaaaacactatgcccacagggatgcaggcatagttgccagg
catagttgtcactcgggtacacacaaaatacatcagatagactttcagga
agtatgtggttgaatgcagagcatctttttttgcactctagaacctaaga
catgtctgacgccaccaagaacaagagaatcgcattcttggggcataatg
tctggatgtgagtagaagaagaaagtggagcctagatataacccagcctt
atagttcttccaaagaatgtgttgcagctcctcaggcatggaactctgac
caacagttaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_11344486_11345574
seq2: B6Ng01-260P05.b_178_1251

seq1  GGAAAGCACACAGATCCATTCACTGACTAAAGCCAGGACAGATTTGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCACACAGATCCATTCACTGACTAAAGCCAGGACAGATTTGGAGC  50

seq1  ATTTATTATTACAGGATGCCAGGGTTCCGGGAGACTACGTTTTCGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTACAGGATGCCAGGGTTCCGGGAGACTACGTTTTCGTGAAC  100

seq1  TTTTCGCCTCTGGACTGCATCTAGGCTTTTGGGCCTGTCACTGGAGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCCTCTGGACTGCATCTAGGCTTTTGGGCCTGTCACTGGAGTCAC  150

seq1  TACTGGAGTGGATTTAGCAGTTTTCTTGATTGCTATATCTGTTCAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGTGGATTTAGCAGTTTTCTTGATTGCTATATCTGTTCAAAGCT  200

seq1  TTTCTCTCTAATTTATTGAGCTGTTTTCTCCCTACTGGGCTCAGTATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTAATTTATTGAGCTGTTTTCTCCCTACTGGGCTCAGTATATG  250

seq1  TATCAGGTTCTTTCTTTATAAGACACTTAATTTTCAAATGTTTTCCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTTCTTTCTTTATAAGACACTTAATTTTCAAATGTTTTCCCTAA  300

seq1  GTGTGTGGGTTGACCTTTTTACATATCAACAGAGTGTTTCACAAAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGTTGACCTTTTTACATATCAACAGAGTGTTTCACAAAGCAGA  350

seq1  AAATTTAAAATAGAATCAATTAATAATTTTTTTCTCTCATGGTCACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATAGAATCAATTAATAATTTTTTTCTCTCATGGTCACAAAT  400

seq1  TGGGAGTCATACCTAGAAAATGTTTTCTTAACCCAGGGTCATTAAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCATACCTAGAAAATGTTTTCTTAACCCAGGGTCATTAAGATTC  450

seq1  CATTTGCTTATTGATGTTACATGTTTACATTTTTAAATTTACATTTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTTATTGATGTTACATGTTTACATTTTTAAATTTACATTTATGA  500

seq1  TAATACCTGGTTTAAGAACTGTAATGACAACCATTTAGTATCTGACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGGTTTAAGAACTGTAATGACAACCATTTAGTATCTGACAGGG  550

seq1  AATGTTCACTGATGCCTTCTCTATCTCACAGGTTCACACCATGGCTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCACTGATGCCTTCTCTATCTCACAGGTTCACACCATGGCTTATG  600

seq1  TACTTGGGATGTGGTTTCTTTTTTATTTGGCTCCTTTCTGTAGAGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGATGTGGTTTCTTTTTTATTTGGCTCCTTTCTGTAGAGACTGG  650

seq1  CACTGAGTTGAGGCCTTCTTGTCTTTCCTAGCATGGTTATTTTGAGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTGAGGCCTTCTTGTCTTTCCTAGCATGGTTATTTTGAGTTTC  700

seq1  CATCTAGGTCCTGATAGTTCTGCCCTTCTGATTATGTGCCCTTTTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGGTCCTGATAGTTCTGCCCTTCTGATTATGTGCCCTTTTGGTTT  750

seq1  AATTCTCTCTTTGTTATTACCCCTTTACAACTCTTGAATTATGGGTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTCTTTGTTATTACCCCTTTACAACTCTTGAATTATGGGTAAGT  800

seq1  TTCCGCTGTTGTACTCTTATGCATGGTGGTAATTCACTCTGCAGCTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCTGTTGTACTCTTATGCATGGTGGTAATTCACTCTGCAGCTGTGC  850

seq1  TCCTGCCAAAAACACTCTCTAGTGTGGTGTTCACTCAACAACTGTAGCTT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTGCCAAAAACACTCTCTAGTGTGGTGTTCACTCAAC-ACTGTAGCTT  899

seq1  TCAACGCTACAAGTTTGAGTTTTAGAAAC-TTTTCTGTG-TGTTGACATA  948
      |||||||||| |||||||||||||||||| ||||||||| ||||||||||
seq2  TCAACGCTAC-AGTTTGAGTTTTAGAAACTTTTTCTGTGTTGTTGACATA  948

seq1  CA-CAGCAACCAAAGCTCTAAGAACGGAGTCAATGTCCATATTAGTTACT  997
      || |||||| |||||||   ||||| ||||| |||| |||||||||||||
seq2  CACCAGCAA-CAAAGCTTCTAGAAC-GAGTC-ATGT-CATATTAGTTACT  994

seq1  TTTCAGTGACCAAATACACAATAAAAGTAGCTTAGTGGAGGATTTATTGT  1047
      ||||| ||||    |||      | ||||||||| ||||||| |||||| 
seq2  TTTCA-TGAC--GTTAC-----CATAGTAGCTTAATGGAGGA-TTATTG-  1034

seq1  GGCTCAAGGTCAGAGGAAAGCGGTCTGTTCAGCAAAGGAAAT  1089
      |||||||||||| ||| |||||||||||||||| ||||||||
seq2  GGCTCAAGGTCA-AGG-AAGCGGTCTGTTCAGCCAAGGAAAT  1074


seq1: chr17_11502389_11503547
seq2: B6Ng01-260P05.g_67_1228 (reverse)

seq1  GATTAATTGTTGGTCAGGAGTCTCCTTGCCTGAGAAGCTGC-ACACA-TC  48
      |||||| ||||||||| |||| ||| |||||||| |||||| ||||| ||
seq2  GATTAACTGTTGGTCA-GAGT-TCCATGCCTGAGGAGCTGCAACACATTC  48

seq1  TTTGGAAAGAATTAT-AGGCTGGGGTTATATCTAAGCT-CACTTTCTTC-  95
      ||||| ||||| ||| ||||| |||||||||||| ||| |||||||||| 
seq2  TTTGG-AAGAACTATAAGGCT-GGGTTATATCTAGGCTCCACTTTCTTCT  96

seq1  TCTACCTTCAACAT-CAGACATTATTGCCCCAGAATGCGATTCTCTTG-T  143
      |||||  || |||| ||||||||||  ||| ||||||||||||||||| |
seq2  TCTAC--TC-ACATCCAGACATTATGCCCCAAGAATGCGATTCTCTTGTT  143

seq1  CTTGGTGGCGTCAGACATGTCTTAGGTTCTAGAGTGC-AAAAAAGATGCT  192
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTGGTGGCGTCAGACATGTCTTAGGTTCTAGAGTGCAAAAAAAGATGCT  193

seq1  CTGCATTCAACCACATACTTCCTG-AAGTCTATCTGATGTATTTTGTGTG  241
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCATTCAACCACATACTTCCTGAAAGTCTATCTGATGTATTTTGTGTG  243

seq1  TACCCGAGTGACAACTATGCCTGGCAACTATGCCTGCATCCCTGTGGGCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGAGTGACAACTATGCCTGGCAACTATGCCTGCATCCCTGTGGGCA  293

seq1  TAGTG-TTTGCTAGGAGGCCTACATAAAAGAGCTCTGTGTGTGGCTTCAT  340
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTTGCTAGGAGGCCTACATAAAAGAGCTCTGTGTGTGGCTTCAT  343

seq1  CTCCTGGCAGCTCAGCACTCAAGCCAGTGAACACATGCAGCCCTCATGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCAGCTCAGCACTCAAGCCAGTGAACACATGCAGCCCTCATGTG  393

seq1  TCTACAGAGCAGAGGCCGAGGCAGTGCTGGGCTCACCTCAGCCTCTCAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGCAGAGGCCGAGGCAGTGCTGGGCTCACCTCAGCCTCTCAAC  443

seq1  CCACAGTTTATTCTGCCTGAGCTTTCTCATTCCTCAGTGTGCTTCTGCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTATTCTGCCTGAGCTTTCTCATTCCTCAGTGTGCTTCTGCCC  493

seq1  TGTGATTTCCCCAACTCAGCCCATTTAGTTTTGCTCTCCATGGTGCTGAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCCCCAACTCAGCCCATTTAGTTTTGCTCTCCATGGTGCTGAT  543

seq1  CTGGTCTATTTACTGATATATTGAGGAAAAATTACAAGACAAAGAATACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTATTTACTGATATATTGAGGAAAAATTACAAGACAAAGAATACA  593

seq1  TGGTGTCCCAGGAGTTCTGAAAAGCTCAGAGCACATTGTTCATGACATCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCCAGGAGTTCTGAAAAGCTCAGAGCACATTGTTCATGACATCA  643

seq1  TATACACATACATGTGTGTGCATATTTATATACACATGTATGTATGCATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATACATGTGTGTGCATATTTATATACACATGTATGTATGCATG  693

seq1  TATGTAACCACTTAGAAGCTTTATCAAGAACTGGGCAAATAGGAATAGAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACCACTTAGAAGCTTTATCAAGAACTGGGCAAATAGGAATAGAT  743

seq1  CTATAGTGCAGTGAGTTAATTTATTTGTTCTTTGGTTAAGAAGTAAATTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTGCAGTGAGTTAATTTATTTGTTCTTTGGTTAAGAAGTAAATTA  793

seq1  CTTTAAAACTTCACTGGGGAAACAAACAGAATTTAGCAGTCTTGTACCAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACTTCACTGGGGAAACAAACAGAATTTAGCAGTCTTGTACCAT  843

seq1  AGTAGATCTTTTGTCAATGTTTTGTTTTGTTTTGTTTTTTTTAAAAGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTTTTGTCAATGTTTTGTTTTGTTTTGTTTTTTTTAAAAGCCA  893

seq1  AGGGTATTACCCCACAATAATAAACTGTGGGAGATTAGGGAGTCACACTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTACCCCACAATAATAAACTGTGGGAGATTAGGGAGTCACACTG  943

seq1  AAAATGCTCTTCCTGAGTTACGCAGGTCGTTCTGCTCCAGACTGATATCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTCTTCCTGAGTTACGCAGGTCGTTCTGCTCCAGACTGATATCT  993

seq1  GTCTGAGCATTGTTTACAGAAGCCTTTGTACTTCCGCATGCAAGCCTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCATTGTTTACAGAAGCCTTTGTACTTCCGCATGCAAGCCTTTC  1043

seq1  CCGCCTGGGAATATCAAGCCCCCTGCATAAATGTGTCATTAAACATATGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGGGAATATCAAGCCCCCTGCATAAATGTGTCATTAAACATATGG  1093

seq1  GAAATGGAGAGGTTAATTGCCTTTCCTTGTGTCACACGGTGAGAAGGAAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGAGGTTAATTGCCTTTCCTTGTGTCACACGGTGAGAAGGAAA  1143

seq1  CCAAACCGAGAATGAATTC  1159
      |||||||||||||||||||
seq2  CCAAACCGAGAATGAATTC  1162


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