BAC Information

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BAC

Clone NameB6Ng01-262A11
Chromosome17 (Build37)
Map Location 59,438,847 - 59,439,892
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262A11.bB6Ng01-262A11.g
ACCGA066553GA066554
length1,0461,115
definitionB6Ng01-262A11.b B6Ng01-262A11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctatggcagatgatgacagcataattttgtgtttgcaattca
tgctagcctaatttgtgttgtactttagatttctaacaattgataagtac
tcttgagtacaagctaatttttacaattcttctaacagcttcattcccat
ctgatagattgtgtttccttcttcaatagagtttatattctcaaaactat
ttgtattatgtatcatatggctcaggaccctgtatcctgtatgttgtgtg
ttactcatttatctatcattcttcttaagatgctatcctttggccaggca
gtggtggctcacacctttaatcccagcacttgggaggcagaggcaggtag
acttctgagtttggggccagcctggtctacagagtgagttccaggacagc
cacagctatacacagagaaaccctgtctcgaaacaaccaaacaaacaagc
aaacaaccaaacatgctatcctttgaacatgatagacttaatctaccttt
aacctagattatgccatcatctgatattcatcctaaactagggttttctt
acagaatctctgctgtttttaagagtccaagatttttaagaaagaatcat
aagacccatgtttgagatattctcctcttttttgacctttttgctgtata
cttgaagtcttcaaatcttacactctgggaaagaggtcacaggcctttta
cactctcagatcctgagaaatgcagctcaactccaatttcccaccatgtg
gatcatgatcctaaggctgcctctcagttctagtcccattgtctctgatc
ttccaactgcctaccagacctgtctgcattagaatgatgcactgcttcgg
tttcatacgattcgcatggtcttctagtctatagcttattgtgtatgcaa
tgatctgaatcctctaggctccactctatattcagagtctaccttttgga
attcaaacaaactgttctctctgaataaattcttattttatcaccactca
aaaaaagcttgactttcagatactgcctttgcaataagatcataaa

gaattctttgtttagctctgtaccccatttctattgcggttatttgaatt
tctggagtccagcttcttgagtttttgtatatattggatattagtcccct
atcagatttaggatgggtaaagatcctttcctaaactgttgatgacattt
ttgtcttattgacagtgtcttttgccttacagaagctatgcaattttatg
aagtcccatttgtcgattcttgatcttacaacacaagccaatgctgacct
gtttaggaacttttcacctttgcccatatcttcaaggctttttcccactt
tctcctttataagttttagtgtctctggttttatgtggagttccttgatc
cagttagacttgaactttgtgcaaggagataggaatggatcaatttgaat
ccatctacatgattactgccagttaagccagcaccatttgttgaaaatgc
agtctttttttccaatgggtggttttagctcctttgtcaaacaaagatca
agtaaccataggtgtgtgggttcatttctgggtcttcaattttatcccat
tggtctacctgtctgtctctattagtatcatgtagtttttaatcacaatt
gctctgtagtacagctcgaggtcaggcatggtgattccaccagaggttct
tttattgttgagaatagtttttgctatactaggttttttgttattccaga
tgaatttgcaaattggtctttctaactcagagagaattgagttggaatgt
tgatggggattgcattgaatctatagattgttttggaaagatggccattt
ttactatattaatcctgctgatccatgagcatgggagatctttccatctt
ctgagattttctttgatttcttttcttcagagacttgaagttcttgttat
acagatctttcacttcctttgttagagtcacaccaaggtattttatatta
tttgtgactattctgaaggtgtgtttcctaatttctttctcagcctgttt
tattcctttgtgtagagaaagccactgatttatttggagttaaattttaa
atccactactgcagtgaagctgtttatagggtttaggaattctctcgggt
gggaactttgcacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59438847_59439892
seq2: B6Ng01-262A11.b_46_1091 (reverse)

seq1  TTTATGAATCTATTGCAAAGGCAGTATCTGAAAGTCAAAGCTTTTTTTGA  50
      |||||||   |||||||||||||||||||||||||| |||||||||||||
seq2  TTTATGATCTTATTGCAAAGGCAGTATCTGAAAGTC-AAGCTTTTTTTGA  49

seq1  GTTGTGATAAA--TAGAATTTATTCAGAGAGAACAGTTTTGTTTGAATTC  98
      || ||||||||   |||||||||||||||||||||| |||||||||||||
seq2  GTGGTGATAAAATAAGAATTTATTCAGAGAGAACAG-TTTGTTTGAATTC  98

seq1  CAAAAGGTAGACTCTGAATATAGAGTGGAGCCTAGAGGATTCAGATCATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTAGACTCTGAATATAGAGTGGAGCCTAGAGGATTCAGATCATT  148

seq1  GCATACACAATAAGCTATAGACTAGAAGACCATGCGAATCGTATGAAACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACACAATAAGCTATAGACTAGAAGACCATGCGAATCGTATGAAACC  198

seq1  GAAGCAGTGCATCATTCTAATGCAGACAGGTCTGGTAGGCAGTTGGAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTGCATCATTCTAATGCAGACAGGTCTGGTAGGCAGTTGGAAGA  248

seq1  TCAGAGACAATGGGACTAGAACTGAGAGGCAGCCTTAGGATCATGATCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACAATGGGACTAGAACTGAGAGGCAGCCTTAGGATCATGATCCA  298

seq1  CATGGTGGGAAATTGGAGTTGAGCTGCATTTCTCAGGATCTGAGAGTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGGAAATTGGAGTTGAGCTGCATTTCTCAGGATCTGAGAGTGTA  348

seq1  AAAGGCCTGTGACCTCTTTCCCAGAGTGTAAGATTTGAAGACTTCAAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGTGACCTCTTTCCCAGAGTGTAAGATTTGAAGACTTCAAGTA  398

seq1  TACAGCAAAAAGGTCAAAAAAGAGGAGAATATCTCAAACATGGGTCTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAAAAGGTCAAAAAAGAGGAGAATATCTCAAACATGGGTCTTAT  448

seq1  GATTCTTTCTTAAAAATCTTGGACTCTTAAAAACAGCAGAGATTCTGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCTTAAAAATCTTGGACTCTTAAAAACAGCAGAGATTCTGTAA  498

seq1  GAAAACCCTAGTTTAGGATGAATATCAGATGATGGCATAATCTAGGTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCTAGTTTAGGATGAATATCAGATGATGGCATAATCTAGGTTAA  548

seq1  AGGTAGATTAAGTCTATCATGTTCAAAGGATAGCATGTTTGGTTGTTTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATTAAGTCTATCATGTTCAAAGGATAGCATGTTTGGTTGTTTGC  598

seq1  TTGTTTGTTTGGTTGTTTCGAGACAGGGTTTCTCTGTGTATAGCTGTGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGGTTGTTTCGAGACAGGGTTTCTCTGTGTATAGCTGTGGC  648

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCCCAAACTCAGAAGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCCCAAACTCAGAAGTCT  698

seq1  ACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGAGCCACCACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGAGCCACCACTG  748

seq1  CCTGGCCAAAGGATAGCATCTTAAGAAGAATGATAGATAAATGAGTAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAAAGGATAGCATCTTAAGAAGAATGATAGATAAATGAGTAACA  798

seq1  CACAACATACAGGATACAGGGTCCTGAGCCATATGATACATAATACAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATACAGGATACAGGGTCCTGAGCCATATGATACATAATACAAAT  848

seq1  AGTTTTGAGAATATAAACTCTATTGAAGAAGGAAACACAATCTATCAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGAATATAAACTCTATTGAAGAAGGAAACACAATCTATCAGAT  898

seq1  GGGAATGAAGCTGTTAGAAGAATTGTAAAAATTAGCTTGTACTCAAGAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAGCTGTTAGAAGAATTGTAAAAATTAGCTTGTACTCAAGAGT  948

seq1  ACTTATCAATTGTTAGAAATCTAAAGTACAACACAAATTAGGCTAGCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCAATTGTTAGAAATCTAAAGTACAACACAAATTAGGCTAGCATG  998

seq1  AATTGCAAACACAAAATTATGCTGTCATCATCTGCCATAGAGGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAAACACAAAATTATGCTGTCATCATCTGCCATAGAGGAATTC  1046


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