BAC Information

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BAC

Clone NameB6Ng01-264D02
Chromosome17 (Build37)
Map Location 55,310,741 - 55,311,633
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
Downstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264D02.b
ACCGA068161
length894
definitionB6Ng01-264D02.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgctgcttcgacggtatgtttgattacaactggttagccacttc
tcaaaaatatttgctgctttttctttgttttgtttgatatggttttctac
tctgtcaccctatctgataaatctctcagggaatgttcacagttacccaa
tcttcaattaccaagaccccacaccacctatttttctctattgtcagtct
tatgatcagctgatataattctctttccttctgtgacttaaatttcagcc
acagaatctactttctaaagaatcactgtgtcaattcaagagtttttata
cctgtgcttttgccaacaggttctgagaactctgaataaatatctttgtt
cttgcgcataaaaaaaaaattgattcaggagatgcttgaaggtccaggtg
tctacttgctttaaacataattctagccttaaattcccttcttaatagct
tttttcatgctatttctagcaaaaaaaattaaaagaaaaaaataaaattg
agaaatttaaacaagtggaaagacctaaaaaaaaaaaaaaaaaaaaaaaa
gcctcccaacagaaagaaccctaaaatggggaaatgaagggatgtagatt
tattggaaaacctcaaaatggagctcaggttatttactttggttttgctt
tgctttgctttgctctgctctgctctgctctgctctgctctgctctgctc
tgcccggctctgctctgctctgctctgctctgctctgctctgctctgccc
tgctttgctttgctttggtttgttcttaccctaaataccttagcacaaat
ttcactggatgtcatttttcttcctctatttgtaacatgctcgctacgta
catctgtgcagactaatagcacttgtatcaaactcttctgtttg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55310741_55311633
seq2: B6Ng01-264D02.b_42_935

seq1  GAATTCTGCTGCTCACACACGGTATGTTTGAAGACAACT-TAGAGCCACT  49
      |||||||||||||     |||||||||||||  ||||||    |||||||
seq2  GAATTCTGCTGCT--TCGACGGTATGTTTGATTACAACTGGTTAGCCACT  48

seq1  TCTAGAAAATATTTGCTGCTTTTTCTTTGTTTTGTTTGATATGGTTTTCT  99
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAATATTTGCTGCTTTTTCTTTGTTTTGTTTGATATGGTTTTCT  98

seq1  ACTCTGTCACCCTATCTGAGAAATCTCTCAGGGAATGTTCACAGTTACCC  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTCTGTCACCCTATCTGATAAATCTCTCAGGGAATGTTCACAGTTACCC  148

seq1  AATCTTCAATTACCAAGACCAGAGACCACCTATTTTTCTCTATTGTCAGT  199
      ||||||||||||||||||||  | ||||||||||||||||||||||||||
seq2  AATCTTCAATTACCAAGACCCCACACCACCTATTTTTCTCTATTGTCAGT  198

seq1  CTTATGATCAGCTGATATAATTCTCTTTCCTTCTGTGACTTAAATTTCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATCAGCTGATATAATTCTCTTTCCTTCTGTGACTTAAATTTCAG  248

seq1  CCACAGAATCTACTTTCTAAAGAATCACTGTGTCAATTCAAGAGTTTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAATCTACTTTCTAAAGAATCACTGTGTCAATTCAAGAGTTTTTA  298

seq1  TACCTGTGCTTTTGCCAACAGGTTCTGAGAACTCTGAATAAATATCTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGCTTTTGCCAACAGGTTCTGAGAACTCTGAATAAATATCTTTG  348

seq1  TTCTTGCACAGAAAAAAAAAATTGATTCAGGAGATGCATGAAGGTCCAGG  399
      ||||||| || |||||||||||||||||||||||||| ||||||||||||
seq2  TTCTTGCGCATAAAAAAAAAATTGATTCAGGAGATGCTTGAAGGTCCAGG  398

seq1  TGTCTACTTGCTTTAAGCATAATTCTAGCCTTAAATTCCCTTCTTAATAG  449
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTCTACTTGCTTTAAACATAATTCTAGCCTTAAATTCCCTTCTTAATAG  448

seq1  CTTTTTTCATGCTATTTCTAGCAAAAGAAATTAAAAGAAAAAAATAAAAT  499
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTTTCATGCTATTTCTAGCAAAAAAAATTAAAAGAAAAAAATAAAAT  498

seq1  TGAGAAATTTAAACAAGTGGAAAGACCTAAAAAAAAAAAAAAAAAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTTAAACAAGTGGAAAGACCTAAAAAAAAAAAAAAAAAAAAAA  548

seq1  AAGCCTCCCAAGAGAAAGAACAATAAAATGGGGAAATGAAGGGATGTAGA  599
      ||||||||||| |||||||||  |||||||||||||||||||||||||||
seq2  AAGCCTCCCAACAGAAAGAACCCTAAAATGGGGAAATGAAGGGATGTAGA  598

seq1  TTTAGTGGAAAACCTCAAAATGGAGCTCAGGTTATTTACTTTTGTTTTGC  649
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTATTGGAAAACCTCAAAATGGAGCTCAGGTTATTTACTTTGGTTTTGC  648

seq1  TTTGCTTTGCTTTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGCTTTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGC  698

seq1  TCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGC  749
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCGGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGC  748

seq1  TCTGCTTTGCTTTGCTTTGCTTTGCTTTTACCATGAATACTTTAGCACTT  799
       |||||||||||||||||| |||| | ||||| | ||||| |||||||  
seq2  CCTGCTTTGCTTTGCTTTGGTTTGTTCTTACCCTAAATACCTTAGCACAA  798

seq1  ATTTCACTGGATGTCATTTTTCTTGAT-TATTTTTAACATTGTCACTACG  848
      ||||||||||||||||||||||||  | ||||| ||||||  || |||||
seq2  ATTTCACTGGATGTCATTTTTCTTCCTCTATTTGTAACATGCTCGCTACG  848

seq1  TACATCTTTGCAGACTAA-AGTAGTTGTATCAAACTCTTCTGTTTG  893
      ||||||| |||||||||| || | ||||||||||||||||||||||
seq2  TACATCTGTGCAGACTAATAGCACTTGTATCAAACTCTTCTGTTTG  894