BAC Information

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BAC

Clone NameB6Ng01-268A16
Chromosome17 (Build37)12 (Build37)
Map Location 89,414,836 - 89,415,19068,591,201 - 68,592,340
singlet/doubletsingletsinglet
Overlap geneFshr
Upstream geneFbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268A16.bB6Ng01-268A16.g
ACCGA071009GA071010
length9831,145
definitionB6Ng01-268A16.b B6Ng01-268A16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,414,836 - 89,415,190)(68,591,201 - 68,592,340)
sequence
gaattcatttccaatttgtctataagataagtgttgttgcccttaagctg
tgttctggctttaaagttaccttaaaatacaatctgagcaatattctctt
tcctaaatttctttcttagccattcctttattaaaattaatgagtcaaaa
ttatgtatgtacatatatataattttaactgtaagtcaatgctgaatctt
atctaataaacaatcttcataagatatttgattaacatttatacaaacaa
attacttctatatatttgaaacataagctgataatgcacacatttatact
aatttttattttttattaagtaatttttcagatctccttggtatttgtct
ctacattttttttttcatttaggtgcatagagaaaattactgaagttatt
tactctgggatagattacatgtcattaagcacaaaaagatacaatttgca
aaacacaagaaaatcaagaagaaggaagaccaacgtgtggatacttcatt
cctccttagaatagggaacaaaatacctatgaaaggagttacagagacaa
agtttggagctaagacaaaaggatggaccatctagagactgcctcacccg
gggatccatcccataatcaaccaccaaacccagactctattacatatgcc
agcaagattttgctgaagggaccctgatatagctgtctcgtatgaggcta
tgccagtgcctggcaaatacagaagtggatgttcacagtcagctattgga
tggatcacagggcccccaatggagaagctagagaaagtacccaaggagct
ggggggatctgcaaccctatagggtggaacaaaaatatgaactaaccagt
tcccccagagttcttggtctctagctgcatatgtagcagaaggtggctta
gtcagccatcattggggaagagaggccccttgggtattgaaaactttata
tgcctcagtacagggggaatgccagggccaaga

gaattcaagggtgaaattgctagctaaagtatgtgatactttgttcagaa
agccacagtgccaggaacaaaagctttccaatatcactagcatccaaaag
acaccctgtgagtacaatattaagactggagtctttgatccccaaattga
tggaatatatcttaactaattttttatttatacattagttcttcgattta
aataatgcttttatatacttttcttccaaagattatgaaataatttttcc
tacagggagattattgttgattttaatgaacagtgaataataatttccta
tgtatacatgccaatgacagcataatgctttgcatcaactgtattttcct
tagtctttgcacctcatatttattttctaacattattaagaaacaaagga
caaaaaccaatttcctaattttaaaatattatgaaaatatgaaagcatag
ataataattgtcaaatgagattattcatagacataaacatatattcacag
acagacacatacagagacatagacacatacacacgcacacgcacacacac
acacacacacacacacacacacacacacacacactgaagagacgtaaagc
caaaagaccataggtaagtaaagagattttaataaaacagaactacagag
tgaggaatttgctagtttaattttcaaaataaatatagaactgttaacat
ctcataggctcaaaggcattgaattcggactggattgtacaatatttgac
tcagatatgcatgacttgatattcatttctgacaccaaaccaagcagaaa
caatacaaaaagcacaaaaaatatacaagccatctagttattgtatcagg
ttgattatagctaaagataactggattattgattagaaataggttacctt
catatcatatgggctaatttgtctaacaactaggttatattaatttgtcc
tagtcaaatgaacaacaaattaactcttaaatattcgtacaatattgagt
tctaagagtgtatctaaattataattatgaactgggcctagtcactgtag
ataataattaacaagtacaaaacagttggggtgtcttggaggtcgcacag
ggattaagatggagaggctttagagccttcaggaattgcctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89414836_89415190
seq2: B6Ng01-268A16.b_486_843 (reverse)

seq1  TTGGTACTTTCTCTAGCTCCTCCATTGGGGTCCCTGTGTTCCATCCAATA  50
      | |||||||||||||||| ||||||||||| ||||||| |||||||||||
seq2  TGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGATCCATCCAATA  50

seq1  GCTGACTGTGAGCATCCACTTCTGAATTTGCCAGGCACTGGCATAGCCTC  100
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GCTGACTGTGAACATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTC  100

seq1  ACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATAT  150
      | | ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATACGAGACAGCTATATCAGGGTCCCTTCAGCAAAATCTTGCTGGCATAT  150

seq1  GCAAT--AGTCTGCGTTTGGTGGCTGATTATGAGATGGATCCCCAGGTGA  198
      | |||  |||||| ||||||||| |||||||| ||||||||||| |||||
seq2  GTAATAGAGTCTGGGTTTGGTGGTTGATTATGGGATGGATCCCCGGGTGA  200

seq1  GGTAGTCTCTGGATGGTCCATCTTTTTGTCTTAGCTCCAAAATTTGTCTC  248
      || ||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  GGCAGTCTCTAGATGGTCCATCCTTTTGTCTTAGCTCCAAACTTTGTCTC  250

seq1  TGTAACTCCTTCCATGGGTATTTTGTTCCCTATTCTAA-GAGGAATGAAG  297
      ||||||||||| ||| |||||||||||||||||||||| |||||||||||
seq2  TGTAACTCCTTTCATAGGTATTTTGTTCCCTATTCTAAGGAGGAATGAAG  300

seq1  TATCCATGCATTGGTCTTCCTTCTTCTTGATTTTCTTGTGTTTTGCAAAT  347
      ||||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACACGTTGGTCTTCCTTCTTCTTGATTTTCTTGTGTTTTGCAAAT  350

seq1  TGTATCTT  355
      ||||||||
seq2  TGTATCTT  358


seq1: chr12_68591201_68592340
seq2: B6Ng01-268A16.g_65_1209

seq1  GAATTCAAGGGTGAAATTGCTAGCTAAAGTATGTGATACTTTGTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTGAAATTGCTAGCTAAAGTATGTGATACTTTGTTCAGAA  50

seq1  AGCCACAGTGCCAGGAACAAAAGCTTTCCAATATCACTAGCATCCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTGCCAGGAACAAAAGCTTTCCAATATCACTAGCATCCAAAAG  100

seq1  ACACCCTGTGAGTACAATATTAAGACTGGAGTCTTTGATCCCCAAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTGAGTACAATATTAAGACTGGAGTCTTTGATCCCCAAATTGA  150

seq1  TGGAATATATCTTAACTAATTTTTTATTTATACATTAGTTCTTCGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATATCTTAACTAATTTTTTATTTATACATTAGTTCTTCGATTTA  200

seq1  AATAATGCTTTTATATACTTTTCTTCCAAAGATTATGAAATAATTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTTTTATATACTTTTCTTCCAAAGATTATGAAATAATTTTTCC  250

seq1  TACAGGGAGATTATTGTTGATTTTAATGAACAGTGAATAATAATTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGATTATTGTTGATTTTAATGAACAGTGAATAATAATTTCCTA  300

seq1  TGTATACATGCCAATGACAGCATAATGCTTTGCATCAACTGTATTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATGCCAATGACAGCATAATGCTTTGCATCAACTGTATTTTCCT  350

seq1  TAGTCTTTGCACCTCATATTTATTTTCTAACATTATTAAGAAACAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGCACCTCATATTTATTTTCTAACATTATTAAGAAACAAAGGA  400

seq1  CAAAAACCAATTTCCTAATTTTAAAATATTATGAAAATATGAAAGCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCAATTTCCTAATTTTAAAATATTATGAAAATATGAAAGCATAG  450

seq1  ATAATAATTGTCAAATGAGATTATTCATAGACATAAACATATATTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTGTCAAATGAGATTATTCATAGACATAAACATATATTCACAG  500

seq1  ACAGACACATACAGAGACATAGACACATACACACGCACACGCACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACATACAGAGACATAGACACATACACACGCACACGCACACACAC  550

seq1  ACACACACACACACACACACACACACACACACACTGAAGAGACGTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTGAAGAGACGTAAAGC  600

seq1  CAAAAGACCATAGGTAAGTAAAGAGATTTTAATAAAACAGAACTACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACCATAGGTAAGTAAAGAGATTTTAATAAAACAGAACTACAGAG  650

seq1  TGAGGAATTTGCTAGTTTAATTTTCAAAATAAATATAGAACTGTTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATTTGCTAGTTTAATTTTCAAAATAAATATAGAACTGTTAACAT  700

seq1  CTCATAGGCTCAAAGGCATTGAATTCGGACTGGATTGTACAATATTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGCTCAAAGGCATTGAATTCGGACTGGATTGTACAATATTTGAC  750

seq1  TCAGATATGCATGACTTGATATTCATTTCTGACACCAAACCAAGCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATGCATGACTTGATATTCATTTCTGACACCAAACCAAGCAGAAA  800

seq1  CAATACAAAAAGCACAAAAAATATACAAGCCATCTAGTTATTGTATCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAAAAGCACAAAAAATATACAAGCCATCTAGTTATTGTATCAGG  850

seq1  TTGATTATAGCTAAAGATAACTGGATTATTGATTAGAAATAGGTTACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATAGCTAAAGATAACTGGATTATTGATTAGAAATAGGTTACCTT  900

seq1  CATATCATATGGGCTAATTTGTCTAACAACTAGGTTATATTAATTTGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATATGGGCTAATTTGTCTAACAACTAGGTTATATTAATTTGTCC  950

seq1  TAGTCAAATGAACAACAAATTAACTCTTAAATATTCGTAACAATATTGAG  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGTCAAATGAACAACAAATTAACTCTTAAATATTCGT-ACAATATTGAG  999

seq1  TTCTAAGAGTGTATCTAAATTATAATTATGAACTGGG-CTAGTCACTGTA  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTAAGAGTGTATCTAAATTATAATTATGAACTGGGCCTAGTCACTGTA  1049

seq1  GATAATAATTAACAAGTACAAAACAGTTTGGGTGTCT--GAGGTCGCACA  1097
      |||||||||||||||||||||||||||| ||||||||  |||||||||||
seq2  GATAATAATTAACAAGTACAAAACAGTTGGGGTGTCTTGGAGGTCGCACA  1099

seq1  GGAATT-AGAT-GAGAGGCCTTAAGAGCC-TCAAGAA-TGCCTTTTA  1140
      || ||| |||| |||||| ||| |||||| ||| ||| |||||||||
seq2  GGGATTAAGATGGAGAGG-CTTTAGAGCCTTCAGGAATTGCCTTTTA  1145


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