BAC Information

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BAC

Clone NameB6Ng01-268M03
Chromosome17 (Build37)
Map Location 24,426,729 - 24,572,295
singlet/doubletdoublet
Overlap geneAbca17, Abca3, Rnps1, Dci
Upstream geneEG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf
Downstream geneDnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268M03.bB6Ng01-268M03.g
ACCGA071531GA071532
length1,036936
definitionB6Ng01-268M03.b B6Ng01-268M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,426,729 - 24,427,758)(24,571,359 - 24,572,295)
sequence
gaattccagccgatctctccaaatctccatctcttaagtccttttgaatc
ccaactacctttttcctttctaacacctcaaccgggttgagccccataat
ggcttctgggaccatgtgttcccaaacaaaactccacaccatctgtatgg
tatctgcatacttggtgtggaaggacatacctaatacctacctacttgca
gcgactctgacctctaggcaaagccacacatccacatagtgtaaaatgca
ccttctcttttgctttggttgtcatttgtttttgagacagagactcacta
tgtagcccaggctgacctggaactcactctatagaccaggctggcctcaa
actcacagaagcagattggcctcctctccctcctgagtgctagaattaaa
agtatgcgccacctcgcctggcttagaactcacttcctgtgttatggttt
ggaggtagtttgttccctacagaagctatatagacaggcagtccccaggg
caatcacactaaaagacggtgagaactttgttgtggatgaccatgtgggc
tgggatgcttcagcctaagggttattattgctgtagtaggcgtgggctac
ttcttgttggagatggtgagttctagcagtagattcagcttcctctcccc
ttcctcctgctaccacatacaacgtgacgctctcctcagaagccgagcag
atgataccttactcttgaccctctcaactcaccacccgtgccagaacaaa
cctctactttcttctctgttgcatgtaatactagttagtagctctctgga
ttcttggcctcatggccttacattcattcttactacacctatgatcttaa
gagtcctgtaagcttgcaggtcctcctgtagttcgaatgcctttggttat
ttttcctttccactactcagatggcacctggaatcctctaaagttgagat
gtgtctgttagaatcactgctaccactctgttacctgtcttgtcagtcgt
cagaaggctttcttgttcagaagtggctctggatgg
gaattcattatgtagaccaggctggcctcgaactcagagactgcctgcct
ctgcctcccaagtgctggggttaaaggtgcactactatgcatgactgatt
cagatgcttcgaatgagactgggtacagtgggcttgtgggtcatctctac
tgtgggtaaaggatggcagaagagacagggctgacaggacaatggccaca
tggagtaataacaacaggaacaacaaaaaactggtcttggtggcaaatgt
ctgtagtctcagcacttggaaggtagcagcagatttaggctttattttta
attttttattgatgtgtatgagtgctttgtctgcatgtgcctagtgcctg
cagaagccagaagatggtgtcgggtcccatggggatggggatggagttct
agatggtcgtgagaaacctgtgggttctgggaagtaaaccaggccctctt
ccagagcagccagtgctctaaccactgagccacctctccaggcccccgga
ggcagatatcatgggaggaagagtaaagcactctaggtgatgcctataga
tttatcctatagaagggttctgagccttctaagtcacattcaaactctta
cctctgggctctgtaaatatggcctatgtacacattgtctagtgctgatt
ccccacaaatagtatcaactccattttctcctggcatcagggagagtaga
agcagcagcaggagctggctggactgatgatcccattagctggaaaccta
gctggcccacgagcaccccagatgaactatttctccctccattcagctga
cactgtctcctctatcctgggggcagttacctttgtcactgtcatcattc
ccgagaccagcagttcataacacaaacatcaaacccgttatctgtgtgat
ctgtcctaattacagcattctctttccttccctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24426729_24427758
seq2: B6Ng01-268M03.b_47_1082

seq1  GAATTCCAGCCGATCTCTCCAAATCTCCATCTCTTAAGTCCTTTTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCGATCTCTCCAAATCTCCATCTCTTAAGTCCTTTTGAATC  50

seq1  CCAACTACCTTTTTCCTTTCTAACACCTCAACCGGGTTGAGCCCCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACCTTTTTCCTTTCTAACACCTCAACCGGGTTGAGCCCCATAAT  100

seq1  GGCTTCTGGGACCATGTGTTCCCAAACAAAACTCCACACCATCTGTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGGGACCATGTGTTCCCAAACAAAACTCCACACCATCTGTATGG  150

seq1  TATCTGCATACTTGGTGTGGAAGGACATACCTAATACCTACCTACTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATACTTGGTGTGGAAGGACATACCTAATACCTACCTACTTGCA  200

seq1  GCGACTCTGACCTCTAGGCAAAGCCACACATCCACATAGTGTAAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTCTGACCTCTAGGCAAAGCCACACATCCACATAGTGTAAAATGCA  250

seq1  CCTTCTCTTTTGCTTTGGTTGTCATTTGTTTTTGAGACAGAGACTCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTTTTGCTTTGGTTGTCATTTGTTTTTGAGACAGAGACTCACTA  300

seq1  TGTAGCCCAGGCTGACCTGGAACTCACTCTATAGACCAGGCTGGCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCAGGCTGACCTGGAACTCACTCTATAGACCAGGCTGGCCTCAA  350

seq1  ACTCACAGAAGCAGATTGGCCTCCTCTCCCTCCTGAGTGCTAGAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAAGCAGATTGGCCTCCTCTCCCTCCTGAGTGCTAGAATTAAA  400

seq1  AGTATGCGCCACCTCGCCTGGCTTAGAACTCACTTCCTGTGTTATGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCGCCACCTCGCCTGGCTTAGAACTCACTTCCTGTGTTATGGTTT  450

seq1  GGAGGTAGTTTGTTCCCTACAGAAGCTATATAGACAGGCAGTCCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTTTGTTCCCTACAGAAGCTATATAGACAGGCAGTCCCCAGGG  500

seq1  CAATCACACTAAAAGACGGTGAGAACTTTGTTGTGGATGACCATGTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACTAAAAGACGGTGAGAACTTTGTTGTGGATGACCATGTGGGC  550

seq1  TGGGATGCTTCAGCCTAAGGGTTATTATTGCTGTAGTAGGCGTGGGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCTTCAGCCTAAGGGTTATTATTGCTGTAGTAGGCGTGGGCTAC  600

seq1  TTCTTGTTGGAGATGGTGAGTTCTAGCAGTAGATTCAGCTTCCTCTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGGAGATGGTGAGTTCTAGCAGTAGATTCAGCTTCCTCTCCCC  650

seq1  TTCCTCCTGCTACCACATACAACGTGACGCTCTCCTCAGAAGCCGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGCTACCACATACAACGTGACGCTCTCCTCAGAAGCCGAGCAG  700

seq1  ATGATACCTTACTCTTGACCCTCTCAACTCACCACCCGTGCCAGAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCTTACTCTTGACCCTCTCAACTCACCACCCGTGCCAGAACAAA  750

seq1  CCTCTACTTTCTTCTCTGTTGCATGTAATACTAGTTAGTAGCTCTCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTTCTTCTCTGTTGCATGTAATACTAGTTAGTAGCTCTCTGGA  800

seq1  TTCTTGGCCTCATGGCCTTACATTCATTCTTACTACACCTATGATCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCCTCATGGCCTTACATTCATTCTTACTACACCTATGATCTTAA  850

seq1  GAGTCCTGTAAGCTTGCAGGTCCTCCTGTAGTTCGAATGCCTTTGGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGTAAGCTTGCAGGTCCTCCTGTAGTTCGAATGCCTTTGGTTAT  900

seq1  TTTTCCTTTCCACTACTCAGATGGCACCTGGAATCCTCTAAAGTTGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCCACTACTCAGATGGCACCTGGAATCCTCTAAAGTTGAGAT  950

seq1  GTGTCTGTTAGAATCACTGCTACCACTCTG-TAACTGTC-TGTCAGTCGT  998
      |||||||||||||||||||||||||||||| || ||||| ||||||||||
seq2  GTGTCTGTTAGAATCACTGCTACCACTCTGTTACCTGTCTTGTCAGTCGT  1000

seq1  CAG-AGGC-TTCTTGTTCAGAAGT-GCTCT-GATGG  1030
      ||| |||| ||||||||||||||| ||||| |||||
seq2  CAGAAGGCTTTCTTGTTCAGAAGTGGCTCTGGATGG  1036

seq1: chr17_24571359_24572295
seq2: B6Ng01-268M03.g_65_1000 (reverse)

seq1  CAGAGGGAAAGGAAAGAGAATGCTGTAATTAGGACAGATCACACAGATAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGG-AAGGAAAGAGAATGCTGTAATTAGGACAGATCACACAGATAA  49

seq1  CGGGTTTGATGTTTGTGTTATG-ACTGCTGGTTCTCGGGAATGATGACAG  99
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  CGGGTTTGATGTTTGTGTTATGAACTGCTGG-TCTCGGGAATGATGACAG  98

seq1  TGACAAAGGTAACTGCCCCCAGGATAGAGGAGACAGTGTCAGCTGAATGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGGTAACTGCCCCCAGGATAGAGGAGACAGTGTCAGCTGAATGG  148

seq1  AGGGAGAAAATAGTTCATCTGGGGTGCTCGTGGGCCAGCTAGGTTTCCAG  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAG-AAATAGTTCATCTGGGGTGCTCGTGGGCCAGCTAGGTTTCCAG  197

seq1  CTAATGGGATCATCAGTCCAGCCAGCTCCTGCTGCTGCTTCTACTCTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGATCATCAGTCCAGCCAGCTCCTGCTGCTGCTTCTACTCTCCC  247

seq1  TGATGCCAGGAGAAAATGGAGTTGATACTATTTGT-GGGAATCAGCACTA  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGATGCCAGGAGAAAATGGAGTTGATACTATTTGTGGGGAATCAGCACTA  297

seq1  GACAATGTGTACATAGGCCATATTTACAGAGCCCAGAGGTAAGAGTTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTGTACATAGGCCATATTTACAGAGCCCAGAGGTAAGAGTTTGA  347

seq1  ATGTGACTTAGAAGGCTCAGAACCCTTCTATAGGATAAATCTATAGGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTAGAAGGCTCAGAACCCTTCTATAGGATAAATCTATAGGCAT  397

seq1  CACCTAGAGTGCTTTACTCTTCCTCCCATGATATCTGCCTCCGGGGGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAGTGCTTTACTCTTCCTCCCATGATATCTGCCTCCGGGGGCCT  447

seq1  GGAGAGGTGGCTCAGTGGTTAGAGCACTGGCTGCTCTGGAAGAGGGCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGGCTCAGTGGTTAGAGCACTGGCTGCTCTGGAAGAGGGCCTG  497

seq1  GTTTACTTCCCAGAACCCACAGGTTTCTCACGACCATCTAGAACTCCATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTCCCAGAACCCACAGGTTTCTCACGACCATCTAGAACTCCATC  547

seq1  CCCATCCCCATGGGACCCGACACCATCTTCTGGCTTCTGCAGGCACTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCCATGGGACCCGACACCATCTTCTGGCTTCTGCAGGCACTAGG  597

seq1  CACATGCAGACAAAGCACTCATACACATCAATAAAAAATTAAAAATAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGACAAAGCACTCATACACATCAATAAAAAATTAAAAATAAAG  647

seq1  CCTAAATCTGCTGCTACCTTCCAAGTGCTGAGACTACAGACATTTGCCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCTGCTGCTACCTTCCAAGTGCTGAGACTACAGACATTTGCCAC  697

seq1  CAAGACCAGTTTTTTGTTGTTCCTGTTGTTATTACTCCATGTGGCCATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAGTTTTTTGTTGTTCCTGTTGTTATTACTCCATGTGGCCATTG  747

seq1  TCCTGTCAGCCCTGTCTCTTCTGCCATCCTTTACCCACAGTAGAGATGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAGCCCTGTCTCTTCTGCCATCCTTTACCCACAGTAGAGATGAC  797

seq1  CCACAAGCCCACTGTACCCAGTCTCATTCGAAGCATCTGAATCAGTCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCCCACTGTACCCAGTCTCATTCGAAGCATCTGAATCAGTCATG  847

seq1  CATAGTAGTGCACCTTTAACCCCAGCACTTGGGAGGCAGAGGCAGGCAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAGTGCACCTTTAACCCCAGCACTTGGGAGGCAGAGGCAGGCAGT  897

seq1  CTCTGAGTTCGAGGCCAGCCTGGTCTACATAATGAATTC  937
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTCGAGGCCAGCCTGGTCTACATAATGAATTC  936