BAC Information

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BAC

Clone NameB6Ng01-271H14
Chromosome17 (Build37)
Map Location 68,547,971 - 68,549,058
singlet/doubletsinglet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645, Epb4.1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H14.bB6Ng01-271H14.g
ACCGA073546GA073547
length1,1971,088
definitionB6Ng01-271H14.b B6Ng01-271H14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataccaagtgttgagaggaattatttggaagaagattttatta
aaaaagaaaaaggctaattttttgagcaactcaaggaataccatgtcatc
ataatatctctgaactccaaaagtaaatcatacaaagggaagaaaatact
ctgccttatctttacagctctatgacaaaacaaccaaggcaggtcacttt
acaaaaagaagagggtttgtttgtttgtttgtttgtttgtttgtttgttt
agctaaaactttagctaagtacaggattagagatggactggtttggtctc
tagtgaggataatggcgtcaaaccatggccagaaaacatgtaggagaaat
tgcatctcaaaccaggggagacaggcaaatcatacgaccccttttgagaa
cacatctccatgaccccaagacccttcaggtaatttcttgaatggactca
acaatccccagtagccactcttaacatgccaccattaacatgctgagctt
aggagaatgccttcctctcgtccatcacatacatccattaattattagct
ttctacaattcttctatgattaagagttagccttaggttagtgattcagt
ctctgagagccctaaggatctaggttagttgacactgttggtcctcctgt
ggggtacccattccctccagggccctcaatcctttcccaactcttccata
agactgccagaactccatccaatgtttggctgtttctgcatctgtttcag
tcagctgctgggtggagcttctcagaggacagctatgctaggatcctgtc
tcccagcataacagagcatcattaatagtgccagagattgttgcttgccc
ctgggatgggtctcaagttgggccagtgattggttggccattccctcagt
cttcacgctatctttgtccctgcatttcttatagataggacaaattttga
gtttgtgagtggggtgggtgtccttatccttctattgggggttatgcctg
gttcggggggggtggtctcttcaggagctgtccctaagctaataacctgg
ctgtgaattcattcccctaactgaattgatgcttgtctgcttcatgggag
taacgtggcacctagcttaaaaggactgaatgtgtccaagtggtaggtcc
gagatgtcttcaacttctcaagaggagaaatacgttgggacttccgg

gaattctcagtcggtcatagtaacaaaaggctggataacattattaaaca
gggatgttgggagctttctctggtcagtataatcttctacactgagcacg
tcttcactgagagagctgtttcagacagctaaattctgccgagcaccgtc
cccgtgatcttttgttgcatattagcctaacagacaagagcccttagaaa
gggaagatgcagatgaatttgatcactagtttttactgtcgacttgactg
gagttagactcactgtgaagacacgtgtctgggtgtgtcaggggggatat
cctagatcaggttgcttgaggggggaggactcatcataaatgtgagtggt
acatgccacagctggggctgaagaccatatcaaaaagaaagtgagctgtg
gagattcaagagattcatgcactctctttgcttcctggcaaggggaggag
agggaccatatgacctccggtttcaaactcctgtggccatgccatcctgg
gcttcattgaccattttatctcaaattgttacctcaaacccttctgtcct
ctcttaagttgcttggtccaatcggaacagtcatgcaggccttgaggtaa
taagatgaaaatatcttacctgggataccacggcctgtcacaggcatcaa
cattaaagagcttttgcagaactgttttggaaataacctgaatattcatt
catttgtgcacctggcaaagagcatgatccagcttgaaactgtccccatc
ccttagactgtccaattaaattttgatagaaagctcattataaatagttg
tatttcattatattaaggtcactagattgtccttcattaaaaattagctt
aaacaccacacaaaaaaccctccaataaatatgtcctttgagaattctct
aaatgtttagagtaaggagttggttccactgcccttgggtccctgctttc
ctgtcaaggcctgccctctattgaactccattccaaacacaccaccttta
ggcactatttcttttaagcatttgagtccaacttggattttcctgttttt
ttttatttggattccagaaatagatttccttcataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68547971_68549058
seq2: B6Ng01-271H14.g_63_1150

seq1  GAATTCTCAGTCGGTCATAGTAACAAAAGGCTGGATAACATTATTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCGGTCATAGTAACAAAAGGCTGGATAACATTATTAAACA  50

seq1  GGGATGTTGGGAGCTTTCTCTGGTCAGTATAATCTTCTACACTGAGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTGGGAGCTTTCTCTGGTCAGTATAATCTTCTACACTGAGCACG  100

seq1  TCTTCACTGAGAGAGCTGTTTCAGACAGCTAAATTCTGCCGAGCACCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGAGAGAGCTGTTTCAGACAGCTAAATTCTGCCGAGCACCGTC  150

seq1  CCCGTGATCTTTTGTTGCATATTAGCCTAACAGACAAGAGCCCTTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGATCTTTTGTTGCATATTAGCCTAACAGACAAGAGCCCTTAGAAA  200

seq1  GGGAAGATGCAGATGAATTTGATCACTAGTTTTTACTGTCGACTTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGCAGATGAATTTGATCACTAGTTTTTACTGTCGACTTGACTG  250

seq1  GAGTTAGACTCACTGTGAAGACACGTGTCTGGGTGTGTCAGGGGGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGACTCACTGTGAAGACACGTGTCTGGGTGTGTCAGGGGGGATAT  300

seq1  CCTAGATCAGGTTGCTTGAGGGGGGAGGACTCATCATAAATGTGAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATCAGGTTGCTTGAGGGGGGAGGACTCATCATAAATGTGAGTGGT  350

seq1  ACATGCCACAGCTGGGGCTGAAGACCATATCAAAAAGAAAGTGAGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACAGCTGGGGCTGAAGACCATATCAAAAAGAAAGTGAGCTGTG  400

seq1  GAGATTCAAGAGATTCATGCACTCTCTTTGCTTCCTGGCAAGGGGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCAAGAGATTCATGCACTCTCTTTGCTTCCTGGCAAGGGGAGGAG  450

seq1  AGGGACCATATGACCTCCGGTTTCAAACTCCTGTGGCCATGCCATCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATATGACCTCCGGTTTCAAACTCCTGTGGCCATGCCATCCTGG  500

seq1  GCTTCATTGACCATTTTATCTCAAATTGTTACCTCAAACCCTTCTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTGACCATTTTATCTCAAATTGTTACCTCAAACCCTTCTGTCCT  550

seq1  CTCTTAAGTTGCTTGGTCCAATCGGAACAGTCATGCAGGCCTTGAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGTTGCTTGGTCCAATCGGAACAGTCATGCAGGCCTTGAGGTAA  600

seq1  TAAGATGAAAATATCTTACCTGGGATACCACGGCCTGTCACAGGCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAAAATATCTTACCTGGGATACCACGGCCTGTCACAGGCATCAA  650

seq1  CATTAAAGAGCTTTTGCAGAACTGTTTTGGAAATAACCTGAATATTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGAGCTTTTGCAGAACTGTTTTGGAAATAACCTGAATATTCATT  700

seq1  CATTTGTGCACCTGGCAAAGAGCATGATCCAGCTTGAAACTGTCCCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGCACCTGGCAAAGAGCATGATCCAGCTTGAAACTGTCCCCATC  750

seq1  CCTTAGACTGTCCAATTAAATTTTGATAGAAAGCTCATTATAAATAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGACTGTCCAATTAAATTTTGATAGAAAGCTCATTATAAATAGTTG  800

seq1  TATTTCATTATATTAAGGTCACTAGATTGTCCTTCATTAAAAATTAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTATATTAAGGTCACTAGATTGTCCTTCATTAAAAATTAGCTT  850

seq1  AAACACCACACAAAAAAACCCTCCAATAAATATGTCC-TTGAGAATTCTC  899
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAACACCACAC-AAAAAACCCTCCAATAAATATGTCCTTTGAGAATTCTC  899

seq1  TAAAATGTTTAGAGTAAGGAGTTGGTTCCACTG-CCTTGGGTCCCTGC-T  947
      | ||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  T-AAATGTTTAGAGTAAGGAGTTGGTTCCACTGCCCTTGGGTCCCTGCTT  948

seq1  TCCTGTC-AGGGCTGCCCTCTATGGAACTCCATTCCAAACACACACCTTT  996
      ||||||| ||| ||||||||||| ||||||||||||||||||||  | ||
seq2  TCCTGTCAAGGCCTGCCCTCTATTGAACTCCATTCCAAACACACCACCTT  998

seq1  TAAGCAACTATTTCTTTT-AGCATTTTGAGTCCAACTGGGATTTTTACAT  1045
      || || |||||||||||| |||| ||||||||||||| |||||||  | |
seq2  TAGGC-ACTATTTCTTTTAAGCA-TTTGAGTCCAACTTGGATTTT--CCT  1044

seq1  GTTTTTTTTTTTTTTGAATCCAGAAATAGATTT-CTTCATAAGC  1088
      |||||||||| ||| || ||||||||||||||| ||||||||||
seq2  GTTTTTTTTTATTTGGATTCCAGAAATAGATTTCCTTCATAAGC  1088


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