BAC Information

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BAC

Clone NameB6Ng01-272E06
Chromosome17 (Build37)
Map Location 49,836,136 - 49,837,249
singlet/doubletsinglet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272E06.b
ACCGA074137
length1,112
definitionB6Ng01-272E06.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggggagcctagtggtgcgacccagcaatggctggctactggaa
accattgtactaggtggacagcgctggatggagacatgaagattcgtggt
ctccgtctgtcttcagtactgggcaccagctcggaggtgcttataaaacg
ctacaccctcagtgaggcaggagaaagaagacatgagtgagacaaagagc
gctggcgcttgcctccttatctctgtttcttcaaggaactgactggtagt
cctgatgcattgcttatggctcatcaagaattcaggaaaaccggtcgaag
gtcaaggtcagctcttggcacacaggaaatatttattcattgtcagttgt
tattagacctactagggtttgttccttgcagtgtgtccgagctgagagtc
cttttaagggattttacatgaaccaaaataagcctcagtgactgatttga
ttttgtttctgattggaccattgaagctttgccaaattctaacaggaaga
gatcttcatggccagaaagatatgtagaatgttcacaatgggagactatt
attaggtgacaattattaggagagatgggagtaaacaaccttcacctctg
gagcttccccactgagtgacaccgtcctccgattcatgtctttttctggt
ctcaaggtccagactcaaagactgcacagagttggctgtcacattcaagt
tttgtaagaataaaattgcgtgagcgtacagcagaattctgcttggtgca
ttagtcccacttgtgtcctagatgtctgcacagtggaacataatggacgt
tttcatcttacctgtcatcattcaggcagatagaccagatgaaactgttt
acactaaaggtttgaaggaagcaagcatcccaaattcttgagaaatgtat
taattaaccctcttcgcttgatattgttattaggtattatttcagaaatg
tctatagtcagatttgggaaattttaaagccagactggattttaaaggga
gagatacaattaattgaatttaagcattgaaaaaaaaatgcaagtagcag
aaaaacagatgagttttcttgctgtcttttacagctgcattcagctgtga
ttcttctgcagc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49836136_49837249
seq2: B6Ng01-272E06.b_46_1157

seq1  GAATTCTGGGGAGCCTAGTGGTGCGACCCAGCAATGGCTGGCTACTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAGCCTAGTGGTGCGACCCAGCAATGGCTGGCTACTGGAA  50

seq1  ACCATTGTACTAGGTGGACAGCGCTGGATGGAGACATGAAGATTCGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTACTAGGTGGACAGCGCTGGATGGAGACATGAAGATTCGTGGT  100

seq1  CTCCGTCTGTCTTCAGTACTGGGCACCAGCTCGGAGGTGCTTATAAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTCTGTCTTCAGTACTGGGCACCAGCTCGGAGGTGCTTATAAAACG  150

seq1  CTACACCCTCAGTGAGGCAGGAGAAAGAAGACATGAGTGAGACAAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCTCAGTGAGGCAGGAGAAAGAAGACATGAGTGAGACAAAGAGC  200

seq1  GCTGGCGCTTGCCTCCTTATCTCTGTTTCTTCAAGGAACTGACTGGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGCTTGCCTCCTTATCTCTGTTTCTTCAAGGAACTGACTGGTAGT  250

seq1  CCTGATGCATTGCTTATGGCTCATCAAGAATTCAGGAAAACCGGTCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCATTGCTTATGGCTCATCAAGAATTCAGGAAAACCGGTCGAAG  300

seq1  GTCAAGGTCAGCTCTTGGCACACAGGAAATATTTATTCATTGTCAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTCAGCTCTTGGCACACAGGAAATATTTATTCATTGTCAGTTGT  350

seq1  TATTAGACCTACTAGGGTTTGTTCCTTGCAGTGTGTCCGAGCTGAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACCTACTAGGGTTTGTTCCTTGCAGTGTGTCCGAGCTGAGAGTC  400

seq1  CTTTTAAGGGATTTTACATGAACCAAAATAAGCCTCAGTGACTGATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGGGATTTTACATGAACCAAAATAAGCCTCAGTGACTGATTTGA  450

seq1  TTTTGTTTCTGATTGGACCATTGAAGCTTTGCCAAATTCTAACAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTGATTGGACCATTGAAGCTTTGCCAAATTCTAACAGGAAGA  500

seq1  GATCTTCATGGCCAGAAAGATATGTAGAATGTTCACAATGGGAGACTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCATGGCCAGAAAGATATGTAGAATGTTCACAATGGGAGACTATT  550

seq1  ATTAGGTGACAATTATTAGGAGAGATGGGAGTAAACAACCTTCACCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGACAATTATTAGGAGAGATGGGAGTAAACAACCTTCACCTCTG  600

seq1  GAGCTTCCCCACTGAGTGACACCGTCCTCCGATTCATGTCTTTTTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCCCACTGAGTGACACCGTCCTCCGATTCATGTCTTTTTCTGGT  650

seq1  CTCAAGGTCCAGACTCAAAGACTGCACAGAGTTGGCTGTCACATTCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTCCAGACTCAAAGACTGCACAGAGTTGGCTGTCACATTCAAGT  700

seq1  TTTGTAAGAATAAAATTGCGTGAGCGTACAGCAGAATTCTGCTTGGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAATAAAATTGCGTGAGCGTACAGCAGAATTCTGCTTGGTGCA  750

seq1  TTAGTCCCACTTGTGTCCTAGATGTCTGCACAGTGGAACATAATGGACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCCACTTGTGTCCTAGATGTCTGCACAGTGGAACATAATGGACGT  800

seq1  TTTCATCTTACCTGTCATCA-TCAGGCAGATAGACCAGATGAAACTGTTT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCATCTTACCTGTCATCATTCAGGCAGATAGACCAGATGAAACTGTTT  850

seq1  ACACTAAAGGTTTGAAGGAAGCAAGCATCCCAAATTCTTGAGAAATGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGGTTTGAAGGAAGCAAGCATCCCAAATTCTTGAGAAATGTAT  900

seq1  TAATTAACCCTCTTCGCTTGATATTGTTATTAGGTATTATTTCAGAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACCCTCTTCGCTTGATATTGTTATTAGGTATTATTTCAGAAATG  950

seq1  TCTATAGTCAGATTT-GGAAATTTTAAAGCCAGACTGGATTTTAAAGGGA  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTATAGTCAGATTTGGGAAATTTTAAAGCCAGACTGGATTTTAAAGGGA  1000

seq1  AGAAGATACAAATAATTGAATTTAAGCAATGAAAAAAAAAATGGCAGTAG  1048
         |||||||| |||||||||||||||| || |||||||||||  |||||
seq2  --GAGATACAATTAATTGAATTTAAGCATTG-AAAAAAAAATGCAAGTAG  1047

seq1  CAGAAAAACCAAGATGAG-TTTCTTGCTGTCTTTACAAGCTGCATCCAGC  1097
      |||||||||  ||||||| |||||||||||||||   |||||||| ||||
seq2  CAGAAAAAC--AGATGAGTTTTCTTGCTGTCTTTTACAGCTGCATTCAGC  1095

seq1  TGTGATTCTTCTGCAGC  1114
      |||||||||||||||||
seq2  TGTGATTCTTCTGCAGC  1112


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