BAC Information

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BAC

Clone NameB6Ng01-273G22
Chromosome17 (Build37)
Map Location 48,534,771 - 48,535,945
singlet/doubletsinglet
Overlap geneNfya
Upstream geneGuca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1
Downstream geneAI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273G22.bB6Ng01-273G22.g
ACCGA075007GA075008
length1,179891
definitionB6Ng01-273G22.b B6Ng01-273G22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggcagccctggcacagaggacaggcaggagacagcagcaggc
tcccagactacagctagtaaaagatgttgtctcaaaaactaagggaaagc
atgtgtgtacaaacctgtacacatatgaattatatacaccatccacactc
ataccagacttctactctgacatacaacctaaatactttaaaaacactgc
tcacctgctgtaaaccttgtgttccagacacaggtacttgcatgatggtt
tggccttgtccaccaggcacagcctgtaccatgatgggttggcctgttga
tgtaataagctggcctccactgacttgcaccattaacggctgcccctgga
cctagaaagaaataaaataacaatgaaatagtgtcagacacaagcagctt
cacaaagatgatcaatcactgcaactatcctgctgcctggaagaggggag
gcaaggcagatttaggaaggtcagtcttccacctccccaccagggtctct
atgtagtgctagctggccttgaactcagatatcctccctctgcctcccaa
gtgcagagatgaaatcctggcctgagacagtgtttgtaaactctaatatt
catattctctctctgtctgtctctctgtgtggaggttatgtgcatatact
acagagagtgggatgtcagatcccctggagcctgacttacaggtgattaa
gagctgtctgacatggtgctgactgaaatcaaagcctctgcagcagcaat
atgtactcttaactatcgagccatcactacagctccaagaagataagtct
agtgttcttcagacacttctgattatttttgattaagtgccaagctggat
agtcaaaggtcaaatataatggaacctatgtagagtctgggaaaatccca
aaaggatgtaaggcactcatcaccaaacacaggctgaattctagaaagca
gtcaagttaccagtaccgcttgcctgctcaagccgatactcagaccggtt
ctggtaaaggctatagaagcagtgggcttcagctagttcaggtgagcctg
atgagaccccaatttcaaggcaagccagactggttcagaaacatatctag
ctaggtttgtgatcaagtagagtcctccgaactggcaccaataaaatatt
tggccatagctgttcaattatccaggagc
gaattctttgtttagctttgtaccccatttttaatagggttgagtttctg
gagtccagcttcttgagttctttgtaaatatattgggtattagtcccctg
tcagatttaggattggtaaaaatcctttcccaatctgttggtggccttat
cgtcttattgacagtgtcttttgccttacagaagctttgaaattttatga
ggtcccatttgtcgattctcgatcttatagcacaagccattgctgttctg
ttaggctatcagagtaattatggctttatagaatgaactgggtagagtac
cttctgtttctattttgtggaatagtttgaggagaattgaaattaggtct
tctttgaaggtctgatagaactctgcactaaacccatctggtcctgggct
ttttttttttttttttcattttttttctttttttttttttttttggttgg
gagactattaacgactgcctctatttctttaggggatatgggactgttta
gatcattaatctgatcctgaattaactttggtacctggtatctgtctaga
aaattgtccatttcatccaggttttccagttttgttgagtatagcccttt
gtagtaggatctggtgatgttttggatttcctcaggttctgttgttatgt
ctcccttttcatttctgattttgttaattaggatactgtccctctagtta
gtctgtctaacggtttatctatcttgttgattttatcaaaaaaacagctc
ctggtttgattgattctttgtatagttctttttgtttctacttggttggg
tttcagccctgccttctactatcaagattttacctttgatgagtataagt
gcccctccttgtcttttttgatgactttgggttggagtcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_48534771_48535945
seq2: B6Ng01-273G22.b_46_1224

seq1  GAATTCATGGCAGCCCTGGCACAGAGGACAGGCAGGAGACAGCAGCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGCCCTGGCACAGAGGACAGGCAGGAGACAGCAGCAGGC  50

seq1  TCCCAGACTACAGCTAGTAAAAGATGTTGTCTCAAAAACTAAGGGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACTACAGCTAGTAAAAGATGTTGTCTCAAAAACTAAGGGAAAGC  100

seq1  ATGTGTGTACAAACCTGTACACATATGAATTATATACACCATCCACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTACAAACCTGTACACATATGAATTATATACACCATCCACACTC  150

seq1  ATACCAGACTTCTACTCTGACATACAACCTAAATACTTTAAAAACACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGACTTCTACTCTGACATACAACCTAAATACTTTAAAAACACTGC  200

seq1  TCACCTGCTGTAAACCTTGTGTTCCAGACACAGGTACTTGCATGATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTGTAAACCTTGTGTTCCAGACACAGGTACTTGCATGATGGTT  250

seq1  TGGCCTTGTCCACCAGGCACAGCCTGTACCATGATGGGTTGGCCTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTCCACCAGGCACAGCCTGTACCATGATGGGTTGGCCTGTTGA  300

seq1  TGTAATAAGCTGGCCTCCACTGACTTGCACCATTAACGGCTGCCCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGCTGGCCTCCACTGACTTGCACCATTAACGGCTGCCCCTGGA  350

seq1  CCTAGAAAGAAATAAAATAACAATGAAATAGTGTCAGACACAAGCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGAAATAAAATAACAATGAAATAGTGTCAGACACAAGCAGCTT  400

seq1  CACAAAGATGATCAATCACTGCAACTATCCTGCTGCCTGGAAGAGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGATGATCAATCACTGCAACTATCCTGCTGCCTGGAAGAGGGGAG  450

seq1  GCAAGGCAGATTTAGGAAGGTCAGTCTTCCACCTCCCCACCAGGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAGATTTAGGAAGGTCAGTCTTCCACCTCCCCACCAGGGTCTCT  500

seq1  ATGTAGTGCTAGCTGGCCTTGAACTCAGATATCCTCCCTCTGCCTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGCTAGCTGGCCTTGAACTCAGATATCCTCCCTCTGCCTCCCAA  550

seq1  GTGCAGAGATGAAATCCTGGCCTGAGACAGTGTTTGTAAACTCTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGATGAAATCCTGGCCTGAGACAGTGTTTGTAAACTCTAATATT  600

seq1  CATATTCTCTCTCTGTCTGTCTCTCTGTGTGGAGGTTATGTGCATATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTCTCTCTGTCTGTCTCTCTGTGTGGAGGTTATGTGCATATACT  650

seq1  ACAGAGAGTGGGATGTCAGATCCCCTGGAGCCTGACTTACAGGTGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTGGGATGTCAGATCCCCTGGAGCCTGACTTACAGGTGATTAA  700

seq1  GAGCTGTCTGACATGGTGCTGACTGAAATCAAAGCCTCTGCAGCAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCTGACATGGTGCTGACTGAAATCAAAGCCTCTGCAGCAGCAAT  750

seq1  ATGTACTCTTAACTATCGAGCCATCACTACAGCTCCAAGAAGATAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCTTAACTATCGAGCCATCACTACAGCTCCAAGAAGATAAGTCT  800

seq1  AGTGTTCTTCAGACACTTCTGATTATTTTTGATTAAGTGCCAAGCTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTCAGACACTTCTGATTATTTTTGATTAAGTGCCAAGCTGGAT  850

seq1  AGTCAAAGGTCAAATATAATGGAACCTATGTAGAGTCT-GGAAAATCCCA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTCAAAGGTCAAATATAATGGAACCTATGTAGAGTCTGGGAAAATCCCA  900

seq1  AAA-GATGTAAGGCACTCATCACCAAACACAGGCTGAATTCTAGAAAGCA  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTAAGGCACTCATCACCAAACACAGGCTGAATTCTAGAAAGCA  950

seq1  GTCAAGTTACCAGTACCGCTTGCCTGCTCAAGCCGATACTCAGGACCGGT  998
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCAAGTTACCAGTACCGCTTGCCTGCTCAAGCCGATACTCA-GACCGGT  999

seq1  TCTGGTAAAGGCTATAGAAGCAGTGGGCTTCAGCTAGTTCCAGGTGAGCC  1048
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGGTAAAGGCTATAGAAGCAGTGGGCTTCAGCTAGTT-CAGGTGAGCC  1048

seq1  TGATGAGACCCC-ATTTCAAAGCAAAGCCAAGACTGG-TCAGAAACATTA  1096
      |||||||||||| ||||||| || ||||| ||||||| ||||||||| ||
seq2  TGATGAGACCCCAATTTCAAGGC-AAGCC-AGACTGGTTCAGAAACA-TA  1095

seq1  TCTAGCTA-GTTTGTGATCAAGGTAGAGTTCTTCGAACT-GCACCA--TA  1142
      |||||||| |||||||||||| ||||||| || |||||| ||||||   |
seq2  TCTAGCTAGGTTTGTGATCAA-GTAGAGTCCTCCGAACTGGCACCAATAA  1144

seq1  AATATTTG--CATAGTTGTTTTAATTAT-CAGGAGC  1175
      ||||||||  ||||| || || |||||| |||||||
seq2  AATATTTGGCCATAGCTG-TTCAATTATCCAGGAGC  1179