BAC Information

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BAC

Clone NameB6Ng01-276N06
Chromosome17 (Build37)
Map Location 62,858,882 - 63,033,681
singlet/doubletdoublet
Overlap geneEfna5
Upstream geneLOC100043560
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N06.bB6Ng01-276N06.g
ACCGA077509GA077510
length1,161964
definitionB6Ng01-276N06.b B6Ng01-276N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,858,882 - 62,860,030)(63,032,896 - 63,033,681)
sequence
gaattccataaactacatttcccttgaacaatttctacttcccaagagac
aatcattttagcccattgtttggactttgagttttgagcaaatgattaaa
aagcataaatcaccctactaagaaaccatagaattccacggattatctac
acattgcaatgatttaatgggagttttccactctctactctgaccaggga
tttcaatgttcatgtgacacttaccatttcttataagtctcccctagcat
tcgggttgaagaacttggaatcctctttccatatcagtctctaaccctgg
acttgatccctagtttgggagtgactgtcacatgtattccagagactttc
tatgggtcacccaatataaagagacttcatagttgtcaccctcagtgaca
tccacttcctgcgaacttattcagaaatgattctgtctgcagagacctac
tccactgaagttcactcgctgtcctgtgatgctaaagtatcatcctacta
tctgatctagttatctaaatggtcactctgtccaacatagtgggacaaat
cttctgattttctggggttactaccccaaaactaaggaggtaaaggtagg
agatggttatgttcgaggtcagtgtggtgatacagccagactcagcctta
aaaaaccaaaaaccaaagaaagacccttagtagtattttggacaaaggaa
ccaaagaatttcctagcagacactgttttagtaacatgaacatttttcta
cagataaatattccatatttattcaaaatagctcctgccaatccttaagt
ggttagcagcctgacacttacactaagaaatcctcactctgactaacttc
ctatgagtcacgctgactcttgtgtgtattcctctcccctcagccaggtc
agatttgcctttgtcattcagaccaacttcctttcaccttgagaaagttc
tgcacgttgcttcatacactttaaagtaaaatgctttcttacttggcttt
ttctgacatgatcgatctttagttgaaaactagagacgcactttgtcagt
aatttcagaacttatttcattaggaccaaacgaacctgctgagactttgg
tgttggaaggctagggagatggctttgtttggtaagtactttgtctttgc
atgccaagaag

gaattcttctaatccctctaacaaattttaaagtgtatttgttctcaaga
gcatttgtggccagtgccttgactaaatgcacacatcagggcattttccc
aattatgtgtgtgctatgtcagaactgtcacagtttggtacagagtatat
tggaaaatacccatgaaaataattaaaatttaaaattctattttttcttt
taatatgagaattaaattatctttgaaaaaatttgaattttaaaatataa
tgattgaaaatgactttatttataatgacactatacagtgtgtgtgtaca
aagaaaatatggtttgatatgtacatgagttattctatatatttatgtta
tgtttttggttttgttttgttttttagtttagtaatatataacatttatt
ttgctagagaaatgaccaagttgaagtattacaaaagtattgggggccag
cgagatgacttaccagttaagagtactgagtactcttccagaggatctag
gtttgagtcccagcacccacatgatggctcacaactatctgtaactctag
ttccagggactccaacactctcttctggcctctgtgggtgcgagtcatgc
acttggtgtgtgaacatacacattaaataaattctttaagaatacgttag
gagctggagagatggctcagcagctgggagaatggattactctcccagag
gacccaggttcaattcccagcactcatatggcaactcacaattgtctgta
actctaggatctgataaccttaaaaagatatacatgtaggcaaaacacca
gtacatataaaataaaagtaaataaacattaaaaaagaaaatatttctta
gggatgaaaaccattttgggatatgctacttttagaattgtagactatca
acccaggctccctctctcttccttgttccagttcggcacatttcattagc
agaagctcttgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62858882_62860030
seq2: B6Ng01-276N06.b_46_1206

seq1  GAATTCCATAAACTACATTTCCCTTGAACAATTTCTACTTCCCAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACTACATTTCCCTTGAACAATTTCTACTTCCCAAGAGAC  50

seq1  AATCATTTTAGCCCATTGTTTGGACTTTGAGTTTTGAGCAAATGATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTAGCCCATTGTTTGGACTTTGAGTTTTGAGCAAATGATTAAA  100

seq1  AAGCATAAATCACCCTACTAAGAAACCATAGAATTCCACGGATTATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAATCACCCTACTAAGAAACCATAGAATTCCACGGATTATCTAC  150

seq1  ACATTGCAATGATTTAATGGGAGTTTTCCACTCTCTACTCTGACCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAATGATTTAATGGGAGTTTTCCACTCTCTACTCTGACCAGGGA  200

seq1  TTTCAATGTTCATGTGACACTTACCATTTCTTATAAGTCTCCCCTAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTTCATGTGACACTTACCATTTCTTATAAGTCTCCCCTAGCAT  250

seq1  TCGGGTTGAAGAACTTGGAATCCTCTTTCCATATCAGTCTCTAACCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTTGAAGAACTTGGAATCCTCTTTCCATATCAGTCTCTAACCCTGG  300

seq1  ACTTGATCCCTAGTTTGGGAGTGACTGTCACATGTATTCCAGAGACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCCCTAGTTTGGGAGTGACTGTCACATGTATTCCAGAGACTTTC  350

seq1  TATGGGTCACCCAATATAAAGAGACTTCATAGTTGTCACCCTCAGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTCACCCAATATAAAGAGACTTCATAGTTGTCACCCTCAGTGACA  400

seq1  TCCACTTCCTGCGAACTTATTCAGAAATGATTCTGTCTGCAGAGACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCTGCGAACTTATTCAGAAATGATTCTGTCTGCAGAGACCTAC  450

seq1  TCCACTGAAGTTCACTCGCTGTCCTGTGATGCTAAAGTATCATCCTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAAGTTCACTCGCTGTCCTGTGATGCTAAAGTATCATCCTACTA  500

seq1  TCTGATCTAGTTATCTAAATGGTCACTCTGTCCAACATAGTGGGACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTAGTTATCTAAATGGTCACTCTGTCCAACATAGTGGGACAAAT  550

seq1  CTTCTGATTTTCTGGGGTTACTACCCCAAAACTAAGGAGGTAAAGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATTTTCTGGGGTTACTACCCCAAAACTAAGGAGGTAAAGGTAGG  600

seq1  AGATGGTTATGTTCGAGGTCAGTGTGGTGATACAGCCAGACTCAGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTATGTTCGAGGTCAGTGTGGTGATACAGCCAGACTCAGCCTTA  650

seq1  AAAAACCAAAAACCAAAGAAAGACCCTTAGTAGTATTTTGGACAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAACCAAAGAAAGACCCTTAGTAGTATTTTGGACAAAGGAA  700

seq1  CCAAAGAATTTCCTAGCAGACACTGTTTTAGTAACATGAACATTTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAATTTCCTAGCAGACACTGTTTTAGTAACATGAACATTTTTCTA  750

seq1  CAGATAAATATTCCATATTTATTCAAAATAGCTCCTGCCAATCCTTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATATTCCATATTTATTCAAAATAGCTCCTGCCAATCCTTAAGT  800

seq1  GGTTAGCAGCCTGACACTTACACTAAGAAATCCTCACTCTGACTAACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAGCCTGACACTTACACTAAGAAATCCTCACTCTGACTAACTTC  850

seq1  CTATGAGTCACGCTGACTCTTGTGTGTATTCCTCTCCCCTCAGCCAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCACGCTGACTCTTGTGTGTATTCCTCTCCCCTCAGCCAGGTC  900

seq1  AGA-TTGCCTTTGTCATTCAGACCAACTTCCTTTCACC-TGAGAAAGTTC  948
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGATTTGCCTTTGTCATTCAGACCAACTTCCTTTCACCTTGAGAAAGTTC  950

seq1  TGCACGTTGC-TCATACACTTTAAAGTAAAATGCTT--CTACTTG--CTA  993
      |||||||||| |||||||||||||||||||||||||   ||||||   | 
seq2  TGCACGTTGCTTCATACACTTTAAAGTAAAATGCTTTCTTACTTGGCTTT  1000

seq1  TTCTGACATGATCGATC-TTAGTGAAAAACTAGAGACGCAACTTTGTCAG  1042
      ||||||||||||||||| |||||  |||||||||||||| ||||||||||
seq2  TTCTGACATGATCGATCTTTAGTTGAAAACTAGAGACGC-ACTTTGTCAG  1049

seq1  TAAATTCAGAAACTA-TTCATAAGGACAAAACGAACCTGCTGAAGAACTT  1091
      ||| |||||||  || ||||| ||||| |||||||||||||| |||  ||
seq2  TAATTTCAGAACTTATTTCATTAGGACCAAACGAACCTGCTG-AGACTTT  1098

seq1  -GTG-TGGAAGGCTAGGGAGATGG-TTTGGTTGGTAAAGTACTT--GCTT  1136
       ||| ||||||||||||||||||| |||| ||||| ||||||||   |||
seq2  GGTGTTGGAAGGCTAGGGAGATGGCTTTGTTTGGT-AAGTACTTTGTCTT  1147

seq1  TGCAAG-CAAGAAG  1149
      |||| | |||||||
seq2  TGCATGCCAAGAAG  1161


seq1: chr17_63032896_63033681
seq2: B6Ng01-276N06.g_67_852 (reverse)

seq1  CATGTATATCTTTTTAAGGTTATCAGATCCTAGAGTTACAGACAATTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATATCTTTTTAAGGTTATCAGATCCTAGAGTTACAGACAATTGTG  50

seq1  AGTTGCCATATGAGTGCTGGGAATTGAACCTGGGTCCTCTGGGAGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCATATGAGTGCTGGGAATTGAACCTGGGTCCTCTGGGAGAGTAA  100

seq1  TCCATTCTCCCAGCTGCTGAGCCATCTCTCCAGCTCCTAACGTATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCCCAGCTGCTGAGCCATCTCTCCAGCTCCTAACGTATTCTTA  150

seq1  AAGAATTTATTTAATGTGTATGTTCACACACCAAGTGCATGACTCGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTATTTAATGTGTATGTTCACACACCAAGTGCATGACTCGCACC  200

seq1  CACAGAGGCCAGAAGAGAGTGTTGGAGTCCCTGGAACTAGAGTTACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCCAGAAGAGAGTGTTGGAGTCCCTGGAACTAGAGTTACAGAT  250

seq1  AGTTGTGAGCCATCATGTGGGTGCTGGGACTCAAACCTAGATCCTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCCATCATGTGGGTGCTGGGACTCAAACCTAGATCCTCTGGA  300

seq1  AGAGTACTCAGTACTCTTAACTGGTAAGTCATCTCGCTGGCCCCCAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCAGTACTCTTAACTGGTAAGTCATCTCGCTGGCCCCCAATAC  350

seq1  TTTTGTAATACTTCAACTTGGTCATTTCTCTAGCAAAATAAATGTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATACTTCAACTTGGTCATTTCTCTAGCAAAATAAATGTTATAT  400

seq1  ATTACTAAACTAAAAAACAAAACAAAACCAAAAACATAACATAAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAACTAAAAAACAAAACAAAACCAAAAACATAACATAAATATAT  450

seq1  AGAATAACTCATGTACATATCAAACCATATTTTCTTTGTACACACACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACTCATGTACATATCAAACCATATTTTCTTTGTACACACACACT  500

seq1  GTATAGTGTCATTATAAATAAAGTCATTTTCAATCATTATATTTTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGTCATTATAAATAAAGTCATTTTCAATCATTATATTTTAAAAT  550

seq1  TCAAATTTTTTCAAAGATAATTTAATTCTCATATTAAAAGAAAAAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTTTCAAAGATAATTTAATTCTCATATTAAAAGAAAAAATAGA  600

seq1  ATTTTAAATTTTAATTATTTTCATGGGTATTTTCCAATATACTCTGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTTAATTATTTTCATGGGTATTTTCCAATATACTCTGTACC  650

seq1  AAACTGTGACAGTTCTGACATAGCACACACATAATTGGGAAAATGCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGACAGTTCTGACATAGCACACACATAATTGGGAAAATGCCCTG  700

seq1  ATGTGTGCATTTAGTCAAGGCACTGGCCACAAATGCTCTTGAGAACAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCATTTAGTCAAGGCACTGGCCACAAATGCTCTTGAGAACAAAT  750

seq1  ACACTTTAAAATTTGTTAGAGGGATTAGAAGAATTC  786
      ||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAAAATTTGTTAGAGGGATTAGAAGAATTC  786


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