BAC Information

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BAC

Clone NameB6Ng01-276N15
Chromosome2 (Build37)17 (Build37)
Map Location 23,825,366 - 23,825,49447,419,569 - 47,420,143
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAbi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N15.bB6Ng01-276N15.g
ACCGA077527GA077528
length952570
definitionB6Ng01-276N15.b B6Ng01-276N15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,825,366 - 23,825,494)(47,419,569 - 47,420,143)
sequence
gaattcactgtgtagaccaggctggcctcgaactcagagatccgcctgcc
tctgcctcccgagtgctgggattaaaggcctgtgccataacgcccggcac
aagttttcttttcactttggtttttcaagagaggatgtctctctttctgt
gtaaccctggccatcctggaacccactctgaagaccaggctagcctcaaa
cttggagatcctcctgtctctgcctctcaagtgctgggattgaaggcatg
tgtccccaccacctggctcagtttctattttttaaattttatttttggga
tggagagtcggctcagcggtaaagagcccttgtagaggtcttgggctcca
tttccagcatctttatggtggcaaacaacctcccactccgccttgggcag
tgaaaacatgtacacagatatgcacacaggcaaacatatataaaaattaa
attatttttataatttattgatattttaaatttaaacattcattcattta
atttctttctctccgatgccagatattaaataaccataacctctggtagg
actccccatgctgggatgtgagctttgtgggggacaaagtcttgtcttgc
ttatttttgtggctccagctactaggatagtacctggaacatagtagatg
cttcgtaggtattatatgaataagtgaatacaggagaaaccccgagcttt
atggataatatgaattttataatatacattaattatgcaattattataac
gaagagtgtagccatgtatggtagcacatccttgtaatgtcagtacttag
gtggctgaggcagggggatcaccacagatttaaggtcaacctgggctgta
taatgagactctgtcaatacacacacacacacacacacacacacacacac
acacacacacacacagagctgtgtgattactgatgggaatccatttcaca
tc
ttcacacttcattgggcccagcttcctgtctgggaagtccagtaggctat
atcctgtgtccctcccttccgaggcagaccccacccctgcctgttccttc
catttcagctgccatctggctgaagggagcagcctctctgacttgggctt
ccaggcgcccatttgcaagggttcatttctgtttaatactgtggttcctt
caaggctcagtcttggggcaggcaagatagtgcaagtaatgaaacccctt
gcctccaggcccgacaacccaggacccacacagtggaaggagagaaccaa
ctcccaaaacgtgtcttctccttcacagcagcaccatcattcacagtcat
acacacacatagacagatacacagacacacacacagagaaacatacacag
aggcacacacacaccacacagatgcattctatacacacaaacataccaat
cagtgcaatggggggggggggagagaaacacattttaacttcactcttca
ttcctccctgattctaacagccatgtagtagtgaaccaattatttgtcac
cttccttgtgcaggagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_23825366_23825494
seq2: B6Ng01-276N15.b_49_533 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATGTTTAAATTTAAAATATCAATAAATTATAAAAATAATTTAATTTTTAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  ATATGTTTGCCTGTGTGCATATCTGTGTACATGTTTTCACTGCCCAAGGC  100

seq1  --------------------------------------------------  0
                                                        
seq2  GGAGTGGGAGGTTGTTTGCCACCATAAAGATGCTGGAAATGGAGCCCAAG  150

seq1  --------------------------------------------------  0
                                                        
seq2  ACCTCTACAAGGGCTCTTTACCGCTGAGCCGACTCTCCATCCCAAAAATA  200

seq1  --------------------------------------------------  0
                                                        
seq2  AAATTTAAAAAATAGAAACTGAGCCAGGTGGTGGGGACACATGCCTTCAA  250

seq1  --------------------------------------------------  0
                                                        
seq2  TCCCAGCACTTGAGAGGCAGAGACAGGAGGATCTCCAAGTTTGAGGCTAG  300

seq1  --------------------------------------------------  0
                                                        
seq2  CCTGGTCTTCAGAGTGGGTTCCAGGATGGCCAGGGTTACACAGAAAGAGA  350

seq1  ----------------------ATGTTTAAATTTAAAAATTGTTCATATA  28
                            | ||  |||   |||| ||||       
seq2  GACATCCTCTCTTGAAAAACCAAAGTGAAAA--GAAAACTTGT-------  391

seq1  GCTGGGCAGTGGTAGTGCACGCCTTTAATTCCAGCACTTGGGATTGGGAG  78
      || |||| ||  | |  || ||||||||| |||||||      | |||||
seq2  GCCGGGC-GTTATGGCACAGGCCTTTAATCCCAGCAC------TCGGGAG  434

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  128
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACACAGTG  484

seq1  A  129
      |
seq2  A  485

seq1: chr17_47419569_47420143
seq2: B6Ng01-276N15.g_65_640

seq1  GAATTCTTCACACTTCATTGGGCCCAGCTTCCTGTCTGGGAAGTCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACACTTCATTGGGCCCAGCTTCCTGTCTGGGAAGTCCAGTA  50

seq1  GGCTATATCCTGTGTCCCTCCCTTCCGAGGCAGACCCCACCCCTGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATCCTGTGTCCCTCCCTTCCGAGGCAGACCCCACCCCTGCCTGT  100

seq1  TCCTTCCATTTCAGCTGCCATCTGGCTGAAGGGAGCAGCCTCTCTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATTTCAGCTGCCATCTGGCTGAAGGGAGCAGCCTCTCTGACTT  150

seq1  GGGCTTCCAGGCGCCCATTTGCAAGGGTTCATTTCTGTTTAATACTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCAGGCGCCCATTTGCAAGGGTTCATTTCTGTTTAATACTGTGG  200

seq1  TTCCTTCAAGGCTCAGTCTTGGGGCAGGCAAGATAGTGCAAGTAATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAAGGCTCAGTCTTGGGGCAGGCAAGATAGTGCAAGTAATGAAA  250

seq1  CCCCTTGCCTCCAGGCCCGACAACCCAGGACCCACACAGTGGAAGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCCTCCAGGCCCGACAACCCAGGACCCACACAGTGGAAGGAGAG  300

seq1  AACCAACTCCCAAAACGTGTCTTCTCCTTCACAGCAGCACCATCATTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCCCAAAACGTGTCTTCTCCTTCACAGCAGCACCATCATTCAC  350

seq1  AGTCATACACACACATAGACAGATACACAGACACACACACAGAGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACACACACATAGACAGATACACAGACACACACACAGAGAAACAT  400

seq1  ACACAGAGGCACACACACACCACACAGATGCATTCTATACACACAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGCACACACACACCACACAGATGCATTCTATACACACAAACAT  450

seq1  ACCAATCAGTGCAATGGGGGGGGGGGGAGAGAAACACATTTTAACTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCAGTGCAATGGGGGGGGGGGGAGAGAAACACATTTTAACTTCAC  500

seq1  TCTTCATTCCTCCCTGATTCTAACAGCCATGTAGTAGTGAACCAA-TATT  549
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTCATTCCTCCCTGATTCTAACAGCCATGTAGTAGTGAACCAATTATT  550

seq1  TGTCACCTTCCTTGTGCAGGAGGGAA  575
      ||||||||||||||||||||||||||
seq2  TGTCACCTTCCTTGTGCAGGAGGGAA  576