BAC Information

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BAC

Clone NameB6Ng01-276P08
Chromosome17 (Build37)
Map Location 11,311,037 - 11,341,709
singlet/doubletdoublet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream geneAgpat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P08.bB6Ng01-276P08.g
ACCGA077605GA077606
length1,1031,122
definitionB6Ng01-276P08.b B6Ng01-276P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,311,037 - 11,312,138)(11,340,603 - 11,341,709)
sequence
gaattcttggcacattagcttaatttctttctcataaattcaaacagatt
ctatgattatttttcagtatctccaaacacaaatgtttgtttatgcactt
tttcacaataaagatagagttgttgtaaactctagaaatatcacagagga
aggtggcctccattcctcatgtctgttgttcccagtacttgagaggagaa
agctggagagttctgttggttttgaagctggtctgggtgacagaatgatt
ccttgtatcactgttatccctgccccagcacatacagaatagagacacac
cacaaaagcaaaatgaagcttgcctttattcagaacaataacctgtggca
caaagtattgcacagtctccacataaaccattgatggggaattcagctta
taatggtgaatctgctcagtcctccatagcacagaattctccagtgcttg
atgctttttctgttccatatcttcctttatgcctgtgttgtgtgcatatc
tataacatgcacactggtgaaataatactcacttttctgacagtagtaga
gaaactaatctgtcctgggagatgtgcttacacggacgctgtcgttaact
aatacttctcattatacacacagtccgaggcatttgcactacccagagaa
gtcatgctttgcctttggaaacaactgcatatagtgttatcatattctca
tgttgtgtatctatttgagggtgatttttatctaatatgtttctgagtat
ttgataaaaaaaatcttcctcaaaaggcttcatttttaaaacaagcaaaa
atattgtaaattttgattggacattttgtagaatctgccaatctttttat
gccatctgtctgaatcaatttctctttgtgtgtgtgtatgtgtgtatgtc
tctgctcccccccccacaaccccctctctctcgcacatacacacctcaca
tacacatagacaaagttggaggctgaagaggaatgcgattagacatgaac
agtcaaggacagctttatgacggtcagtcttgttgggggattccagagca
gtctagaacaaagagacttgcctatcatagggtatgtgtagagaggagtc
aaa
gaattccacctctgacagaaaaaaagcctggtaggtcaatacaactcatg
gatcatggaatttctgagggaagaactgagaaacagtgactggggatgtt
gagggaactcttagggaaaggtaaaaaaaaaaaaaaaatatgatcccacc
aagcccagtgtgaagcctcagtgagtttattgggcttacttacaaagcat
gggtgaggagttagttataggagagtgggtgaccctaaatcagtcatgct
ccctataaaatctcagcccaatgtaaatgacgaaaatgatgtcttagaag
atgtcttagatggatgtgttcttagctgtttagacgaaatgatgccttca
gccattcttctgccacatgtactctaatgtatccaggtaacatatcatgt
ataattaaggaagtgttccgtatacctggccatgagaggcagacagaact
gctgaagccctcccaagctcctcccctgagggactgtcatagccaacaat
gatgtcaacagtccttctattatgtcaacagtcaacgttgttgacacacc
cactcttccaagttattagagcttctctgctgaagatgacagctgtggag
ggcagtgctagacagaaggggtaggatgggtgataaggccacagaactgg
tggcctagggtttggaggataactcatgagtcatacgaacaaggacactg
ggcttcattaaaaactgaagaaacttgcttggcaaagagcacagttaaat
aaaatgaaagaaaccaggccacggaaagaaaacatctgaaatgggaatct
gatcgtgggaccagtttttaaagatgggcaaatgacctaggtgcatctat
tcaaagaagttagtctgtcagtcagaataagttcagtgagacttcctagt
ctcattagccagcttgctatggggatcctagttctgcccttttcaaggct
ggtaattacaaagcaagctatccatgtccagttggcatctgcctagggtt
tggggtacccgactcatggactcctacactgtgtgactatgcacttttac
catctagccattcttcatgtctgctaggctaccttctctgtaatacccaa
aactgctctacagataattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_11311037_11312138
seq2: B6Ng01-276P08.b_46_1148

seq1  GAATTCTTGGCACATTAGCTTAATTTCTTTCTCATAAATTCAAACAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCACATTAGCTTAATTTCTTTCTCATAAATTCAAACAGATT  50

seq1  CTATGATTATTTTTCAGTATCTCCAAACACAAATGTTTGTTTATGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTATTTTTCAGTATCTCCAAACACAAATGTTTGTTTATGCACTT  100

seq1  TTTCACAATAAAGATAGAGTTGTTGTAAACTCTAGAAATATCACAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATAAAGATAGAGTTGTTGTAAACTCTAGAAATATCACAGAGGA  150

seq1  AGGTGGCCTCCATTCCTCATGTCTGTTGTTCCCAGTACTTGAGAGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCTCCATTCCTCATGTCTGTTGTTCCCAGTACTTGAGAGGAGAA  200

seq1  AGCTGGAGAGTTCTGTTGGTTTTGAAGCTGGTCTGGGTGACAGAATGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGTTCTGTTGGTTTTGAAGCTGGTCTGGGTGACAGAATGATT  250

seq1  CCTTGTATCACTGTTATCCCTGCCCCAGCACATACAGAATAGAGACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATCACTGTTATCCCTGCCCCAGCACATACAGAATAGAGACACAC  300

seq1  CACAAAAGCAAAATGAAGCTTGCCTTTATTCAGAACAATAACCTGTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGCAAAATGAAGCTTGCCTTTATTCAGAACAATAACCTGTGGCA  350

seq1  CAAAGTATTGCACAGTCTCCACATAAACCATTGATGGGGAATTCAGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATTGCACAGTCTCCACATAAACCATTGATGGGGAATTCAGCTTA  400

seq1  TAATGGTGAATCTGCTCAGTCCTCCATAGCACAGAATTCTCCAGTGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGAATCTGCTCAGTCCTCCATAGCACAGAATTCTCCAGTGCTTG  450

seq1  ATGCTTTTTCTGTTCCATATCTTCCTTTATGCCTGTGTTGTGTGCATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTCTGTTCCATATCTTCCTTTATGCCTGTGTTGTGTGCATATC  500

seq1  TATAACATGCACACTGGTGAAATAATACTCACTTTTCTGACAGTAGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATGCACACTGGTGAAATAATACTCACTTTTCTGACAGTAGTAGA  550

seq1  GAAACTAATCTGTCCTGGGAGATGTGCTTACACGGACGCTGTCGTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAATCTGTCCTGGGAGATGTGCTTACACGGACGCTGTCGTTAACT  600

seq1  AATACTTCTCATTATACACACAGTCCGAGGCATTTGCACTACCCAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTCATTATACACACAGTCCGAGGCATTTGCACTACCCAGAGAA  650

seq1  GTCATGCTTTGCCTTTGGAAACAACTGCATATAGTGTTATCATATTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCTTTGCCTTTGGAAACAACTGCATATAGTGTTATCATATTCTCA  700

seq1  TGTTGTGTATCTATTTGAGGGTGATTTTTATCTAATATGTTTCTGAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTATCTATTTGAGGGTGATTTTTATCTAATATGTTTCTGAGTAT  750

seq1  TTGATAAAAAAAATCTTCCTCAAAAGGCTTCATTTTTAAAACAAGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAAAAATCTTCCTCAAAAGGCTTCATTTTTAAAACAAGCAAAA  800

seq1  ATATTGTAAATTTTGATTGGACATTTTGTAGAATCTGCCAATCTTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAATTTTGATTGGACATTTTGTAGAATCTGCCAATCTTTTTAT  850

seq1  GCCATCTGTCTGAATCAATTTCTCTTTGTGTGTGTGTATGTGTGTATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGTCTGAATCAATTTCTCTTTGTGTGTGTGTATGTGTGTATGTC  900

seq1  TCTGCTCCCCCCCCCACAACCCCCTCTCTCTCGCACATACACACCTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCCCCCCCACAACCCCCTCTCTCTCGCACATACACACCTCACA  950

seq1  TACACATAGACAAAGGTGGAGGCTGAAGAGGGAATGCGGATTAGACATGA  1000
      ||||||||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  TACACATAGACAAAGTTGGAGGCTGAAGA-GGAATGC-GATTAGACATGA  998

seq1  ACAGTC-AGGACAGCTTTATGACGGTCAGTCTTGT--GGGGATT-CAGAG  1046
      |||||| ||||||||||||||||||||||||||||  ||||||| |||||
seq2  ACAGTCAAGGACAGCTTTATGACGGTCAGTCTTGTTGGGGGATTCCAGAG  1048

seq1  CAGTCTAGAACAAAGGAGACTTGCCCAACCATAGGGTATGTG-AGAGAGG  1095
      |||||||||||||| |||||||| || | ||||||||||||| |||||||
seq2  CAGTCTAGAACAAA-GAGACTTG-CCTATCATAGGGTATGTGTAGAGAGG  1096

seq1  AGTCAAA  1102
      |||||||
seq2  AGTCAAA  1103

seq1: chr17_11340603_11341709
seq2: B6Ng01-276P08.g_70_1191 (reverse)

seq1  AAAATTTATCTTTTAGAGCAGTTTTGGGTA-TACA-AGAAGTTCACCTAG  48
      |||| ||||| | ||||||||||||||||| |||| ||||| |  |||||
seq2  AAAAATTATC-TGTAGAGCAGTTTTGGGTATTACAGAGAAGGTAGCCTAG  49

seq1  CAGACAGGAAG-ATGGCTCAGTGGCTAAAGTGC-TTGTCACACAG-GTGT  95
      |||||| |||| ||||||   |||  ||||||| | ||||||||| ||  
seq2  CAGACATGAAGAATGGCTAGATGGTAAAAGTGCATAGTCACACAGTGTAG  99

seq1  GAGTCCATGAGTTCGGGTTCCCCAAACCC-ATGCAGATGCCAACTGGACA  144
      ||||||||||| |||||| |||||||||| | ||||||||||||||||||
seq2  GAGTCCATGAG-TCGGGTACCCCAAACCCTAGGCAGATGCCAACTGGACA  148

seq1  TGG-TAGCTTGC-TTGTAATT-CCAGCCTGGAAA--GGCAGAACTAGGAT  189
      ||| |||||||| |||||||| ||||||| ||||  ||||||||||||||
seq2  TGGATAGCTTGCTTTGTAATTACCAGCCTTGAAAAGGGCAGAACTAGGAT  198

seq1  CCCCATAGCAAGCTGGCTAATGAGACTA-GAAGTCTCACTGAACTAATTC  238
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CCCCATAGCAAGCTGGCTAATGAGACTAGGAAGTCTCACTGAACTTATTC  248

seq1  TGACTGACAGACTAACTTCTTTGAATAGATGCACCTAGGTCATTTGCCCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACAGACTAACTTCTTTGAATAGATGCACCTAGGTCATTTGCCCA  298

seq1  TCTTT-AAAACTGGT-CCACGATCAGATTCCCATTTCAGATGTTTTCTTT  336
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAACTGGTCCCACGATCAGATTCCCATTTCAGATGTTTTCTTT  348

seq1  CCGTGGCCTGGTTTC-TTCATTTTATTT-ACTGTGCTCTTTGCCAAGCAA  384
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CCGTGGCCTGGTTTCTTTCATTTTATTTAACTGTGCTCTTTGCCAAGCAA  398

seq1  GTTTCTTCAG-TTTTAATGAAGCCCAGTGTCCTTGTTCGTATGACTCATG  433
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCAGTTTTTAATGAAGCCCAGTGTCCTTGTTCGTATGACTCATG  448

seq1  AGTTATCCTCCAAACCCTAGGCCACCAGTTCTGTGGCCTTATCACCCATC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCCTCCAAACCCTAGGCCACCAGTTCTGTGGCCTTATCACCCATC  498

seq1  CTACCCCTTCTGTCTAGCACTGCCCTCCACAGCTGTCATCTTCAGCAGAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTTCTGTCTAGCACTGCCCTCCACAGCTGTCATCTTCAGCAGAG  548

seq1  AAGCTCTAATAACTTGGAAGAGTGGGTGTGTCAACAACGTTGACTGTTGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAATAACTTGGAAGAGTGGGTGTGTCAACAACGTTGACTGTTGA  598

seq1  CATAATAGAAGGACTGTTGACATCATTGTTGGCTATGACAGTCCCTCAGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAAGGACTGTTGACATCATTGTTGGCTATGACAGTCCCTCAGG  648

seq1  GGAGGAGCTTGGGAGGGCTTCAGCAGTTCTGTCTGCCTCTCATGGCCAGG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTTGGGAGGGCTTCAGCAGTTCTGTCTGCCTCTCATGGCCAGG  698

seq1  TATACGGAACACTTCCTTAATTATACATGATATGTTACCTGGATACATTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGGAACACTTCCTTAATTATACATGATATGTTACCTGGATACATTA  748

seq1  GAGTACATGTGGCAGAAGAATGGCTGAAGGCATCATTTCGTCTAAACAGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATGTGGCAGAAGAATGGCTGAAGGCATCATTTCGTCTAAACAGC  798

seq1  TAAGAACACATCCATCTAAGACATCTTCTAAGACATCATTTTCGTCATTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACATCCATCTAAGACATCTTCTAAGACATCATTTTCGTCATTT  848

seq1  ACATTGGGCTGAGATTTTATAGGGAGCATGACTGATTTAGGGTCACCCAC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGGCTGAGATTTTATAGGGAGCATGACTGATTTAGGGTCACCCAC  898

seq1  TCTCCTATAACTAACTCCTCACCCATGCTTTGTAAGTAAGCCCAATAAAC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATAACTAACTCCTCACCCATGCTTTGTAAGTAAGCCCAATAAAC  948

seq1  TCACTGAGGCTTCACACTGGGCTTGGTGGGATCATATTTTTTTTTTTTTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGGCTTCACACTGGGCTTGGTGGGATCATATTTTTTTTTTTTTT  998

seq1  TTACCTTTCCCTAAGAGTTCCCTCAACATCCCCAGTCACTGTTTCTCAGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTCCCTAAGAGTTCCCTCAACATCCCCAGTCACTGTTTCTCAGT  1048

seq1  TCTTCCCTCAGAAATTCCATGATCCATGAGTTGTATTGACCTACCAGGCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCAGAAATTCCATGATCCATGAGTTGTATTGACCTACCAGGCT  1098

seq1  TTTTTTCTGTCAGAGGTGGAATTC  1107
      ||||||||||||||||||||||||
seq2  TTTTTTCTGTCAGAGGTGGAATTC  1122