BAC Information

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BAC

Clone NameB6Ng01-277I11
Chromosome17 (Build37)
Map Location 18,221,153 - 18,222,277
singlet/doubletsinglet
Overlap genenone
Upstream geneBC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021
Downstream geneEG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277I11.bB6Ng01-277I11.g
ACCGA078023GA078024
length1,1631,126
definitionB6Ng01-277I11.b B6Ng01-277I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgcccaatttttccatgaggttattagatt
ttctggagtccatcttcttgagttctttatatatattggagattagtccc
ctatctgatttatgattggtaaagatcctttcccaatctgttggtggcct
ttttgtgttatggacagtgtcttttgccttacagaagctttgtaatttta
tgaggtcccatttgtcaattcttgatcttacagcacaagtcatttccatt
ctgtttaggaatttttccgctgtgtccatatctttgaagcttttctccac
tttttcctctagaattttcagtgtctctggttttatgtggagtcccttga
tccatttagacctaagtacaaggagataaggatggatcaattccagttct
tctacattataaccgccagttctgcaaagcaccatttcttgaaaatgctg
tcttttctccactggatggttttagctcccttgtcaaagatcaagtcacc
atatatatgtaggttcatttctggatattcaattctattctattcttcga
cctgtctgtcactataccagtaccatgcagtttttatcacaatttctctg
tagtacagctttaggtcaggcatggagatttcaccagagattcttttatc
attgagaagagtttttgctatcttaggttttttgttattccagatgaatt
tgcaaatttccctttctaattcattgtgagttggaattttgatggggatt
gcattgtatctgtagattgctttcagcaagatagccattttcactatatt
gatcctggcaatccatgagcatgggagatctttccatcttctgagatctt
tgatttctttcttcaaacacttgaagttcttatcatacagatctttcact
tccttagttagagtcacaccaagctatttacattatttgtgactactgtg
aaggttgtgtttccctaatttcctttctcagctgtttatcctttgtgtta
gagaaaggccatttgaattgtggagttatttatattccactactgctagg
tttgagtgtcctgtcgaattttagggtcacttattatactatcatacatc
ggcaagtaaaattgactaatcctcatgtatccttgacccttgtttgaagg
ctctggctacgac
gaattctgaactaaaaatataaataattttacttactgtatgtaattatc
caaatattgatatggtacagctgaatttggcattttcttcccagtgtaga
aagtatgaagagggaaaaatgcaccaatcagaacatctccttcatgatga
aattcttcagtaattatgtaataacatctactgatattaaacataatagc
agagaaaaattttggaacttgcaagagccagaagattaaaatccaggagg
acatcatattattacatggatctgcttgatgcagaaaaaactgtgtccag
tacatgtatgcttggttcttatttttgtgaccatgatttgtatttgttga
tgactcagtctgtcacactaattattccaagggattgagaatccaattgg
gaattttaaaactatccttcccatggactctgcttctgaagccctctatt
caagtgaaaaacaagttaggaaatatgtttcttcatattcttcactaccc
aaaggccctatgacttcagcaaagactacaaacagcaagagctcaagttt
gatcttctcttgggatgaattggctaaccatgtgaaacaagaaactttta
atatgaaaaacaatttaggctgatgtaaccctacaggttacatcagagga
ggcaaactaagtggaaaaggaaaaggctaaaaagaaagcactgaaggact
gaccactcaaaatttatatattgcagcgctttagttggcaattaacaagt
gtgagttataggaaacaactaccaatcaagtttatacaatatacattaga
gtacattataccaacatttcctgcttttattccaagaaagagactttatt
tctaatatctgtaagctttatacaataagaacacttaagagaattttcag
ggtaaggattgttattacaatgtctagttcatttgtatttacaactttta
ataaattacttctattctatcttatttagtccaaagttctctaaaggttt
atgccaaaaaagcacaagaagaagtgcatttaaatgatactttaaaagac
aacctaaggaaatgtttggttggggtttgtgacctaaagaataaaattat
cagaccgttggctaagttatgtaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18221153_18222277
seq2: B6Ng01-277I11.g_68_1193 (reverse)

seq1  GCTTAACATTACTTAG-CAACGTTCTGATAATTTTA-TCTT--AGTCACA  46
      |||| |||| |||||| ||||| ||||||||||||| ||||   ||||||
seq2  GCTT-ACATAACTTAGCCAACGGTCTGATAATTTTATTCTTTAGGTCACA  49

seq1  AACCCCAAACCAAACATTTCCTTAGGTTGTCTTTT-AAGTATCAATTTAA  95
      |||||| |||||||||||||||||||||||||||| ||||||| ||||||
seq2  AACCCC-AACCAAACATTTCCTTAGGTTGTCTTTTAAAGTATC-ATTTAA  97

seq1  ATGCACTCTTCCTTGTGCTTTTTTGGCATAAAACCTTTAGAGAACTTTGG  145
      |||||||  | |||||||||||||||||| ||||||||||||||||||||
seq2  ATGCACTTCTTCTTGTGCTTTTTTGGCAT-AAACCTTTAGAGAACTTTGG  146

seq1  ACTAAATAAGATAGAATAGAAGTAATTTATTAAAAGTTGTAAATACAAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAAGATAGAATAGAAGTAATTTATTAAAAGTTGTAAATACAAAT  196

seq1  GAACTAGACATTGTAATAACAATCCTTACCCTGAAAATTCTCTTAAGTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGACATTGTAATAACAATCCTTACCCTGAAAATTCTCTTAAGTGT  246

seq1  TCTTATTGTATAAAGCTTACAGATATTAGAAATAAAGTCTCTTTCTTGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTATAAAGCTTACAGATATTAGAAATAAAGTCTCTTTCTTGGA  296

seq1  ATAAAAGCAGGAAATGTTGGTATAATGTACTCTAATGTATATTGTATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAGGAAATGTTGGTATAATGTACTCTAATGTATATTGTATAAA  346

seq1  CTTGATTGGTAGTTGTTTCCTATAACTCACACTTGTTAATTGCCAACTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGGTAGTTGTTTCCTATAACTCACACTTGTTAATTGCCAACTAA  396

seq1  AGCGCTGCAATATATAAATTTTGAGTGGTCAGTCCTTCAGTGCTTTCTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGCAATATATAAATTTTGAGTGGTCAGTCCTTCAGTGCTTTCTTT  446

seq1  TTAGCCTTTTCCTTTTCCACTTAGTTTGCCTCCTCTGATGTAACCTGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTTTCCTTTTCCACTTAGTTTGCCTCCTCTGATGTAACCTGTAG  496

seq1  GGTTACATCAGCCTAAATTGTTTTTCATATTAAAAGTTTCTTGTTTCACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATCAGCCTAAATTGTTTTTCATATTAAAAGTTTCTTGTTTCACA  546

seq1  TGGTTAGCCAATTCATCCCAAGAGAAGATCAAACTTGAGCTCTTGCTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGCCAATTCATCCCAAGAGAAGATCAAACTTGAGCTCTTGCTGTT  596

seq1  TGTAGTCTTTGCTGAAGTCATAGGGCCTTTGGGTAGTGAAGAATATGAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTTTGCTGAAGTCATAGGGCCTTTGGGTAGTGAAGAATATGAAG  646

seq1  AAACATATTTCCTAACTTGTTTTTCACTTGAATAGAGGGCTTCAGAAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTTCCTAACTTGTTTTTCACTTGAATAGAGGGCTTCAGAAGCA  696

seq1  GAGTCCATGGGAAGGATAGTTTTAAAATTCCCAATTGGATTCTCAATCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATGGGAAGGATAGTTTTAAAATTCCCAATTGGATTCTCAATCCC  746

seq1  TTGGAATAATTAGTGTGACAGACTGAGTCATCAACAAATACAAATCATGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAATTAGTGTGACAGACTGAGTCATCAACAAATACAAATCATGG  796

seq1  TCACAAAAATAAGAACCAAGCATACATGTACTGGACACAGTTTTTTCTGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAATAAGAACCAAGCATACATGTACTGGACACAGTTTTTTCTGC  846

seq1  ATCAAGCAGATCCATGTAATAATATGATGTCCTCCTGGATTTTAATCTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCAGATCCATGTAATAATATGATGTCCTCCTGGATTTTAATCTTC  896

seq1  TGGCTCTTGCAAGTTCCAAAATTTTTCTCTGCTATTATGTTTAATATCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGCAAGTTCCAAAATTTTTCTCTGCTATTATGTTTAATATCAG  946

seq1  TAGATGTTATTACATAATTACTGAAGAATTTCATCATGAAGGAGATGTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTATTACATAATTACTGAAGAATTTCATCATGAAGGAGATGTTC  996

seq1  TGATTGGTGCATTTTTCCCTCTTCATACTTTCTACACTGGGAAGAAAATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGCATTTTTCCCTCTTCATACTTTCTACACTGGGAAGAAAATG  1046

seq1  CCAAATTCAGCTGTACCATATCAATATTTGGATAATTACATACAGTAAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAGCTGTACCATATCAATATTTGGATAATTACATACAGTAAGT  1096

seq1  AAAATTATTTATATTTTTAGTTCAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  AAAATTATTTATATTTTTAGTTCAGAATTC  1126