BAC Information

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BAC

Clone NameB6Ng01-278H22
Chromosome17 (Build37)
Map Location 84,628,867 - 84,781,344
singlet/doubletdoublet
Overlap geneThada
Upstream geneEG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H22.bB6Ng01-278H22.g
ACCGA078724GA078725
length1,0651,163
definitionB6Ng01-278H22.b B6Ng01-278H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,628,867 - 84,629,937)(84,780,168 - 84,781,344)
sequence
gaattctttccctgcatgcacaactgcttgtactttttgattactagtgt
gaaaacctgccacttttcttagtagagtttagaacccagctcctaggctg
aggcttagaatgaagctcagtatctgagctctcagggagcgcagtgagca
ggcaccctgcctgatgactgaagaggtgtagtctgccacgactgcgcaaa
agccctagggcacacctgtcattggaagcaatatccatactccacatgag
gaactcctttggggagaggtgagcatagcactctgtctggggaagccatt
cgctggggttcaagtgatagagaatctttaggacctacaagtcaaatcaa
agaaaatacgataaggaaactcataggcaaaagtcttgtgctcctaaatc
aagatcacttttaacaacaaggaagggggaatctattttcagaaggcccc
caaatttcactgacttcttctttcctttctaacatcttagagaaactgag
tcagggtagaacaatgagaagtttgagggtccttggtgacctaacatcaa
agctagaagcctgtatggtctcacacatgctaaagcaagcagatttcctt
cctcccttttcctactacttagttttgagacggggtctcactaaggactc
aggctacctttggacctttggtcttgtgccccagcctccttcatatctga
gagttcatgttcatttggactaaacttctcaggtagccatctgcctataa
agagatgtgtgagtgaagaagagctctactctgtgtgtagctaatggagg
tgacatcggttgtttcccatcaccgttctctgtggtttcccagtgccctg
ggagctcactgtttggccagtctgtctccatgcagctctcccagggactc
catgtttatcccctgcgtgctggcatagcagctggcatttccacgggtag
agagctgactgtggtccttaggcttgcgtgcaagcagtgcccacagtgct
ctcgctccacccccacagctaatttcatgatctttctaaagaacagagtt
gctgactatgaccac
gaattctgtagatatttgtaaatggaaaactaagtggaatatttgaaggg
aaattttctttaaaaggcacagtggatgagtagatctgggtacatgcgag
aaatccaatctaaaaaggaaaataaaatttgatttactgctatgcacctt
ctttattttgtcttcttaaagagaaacgcgtagaaagattttgtacagtg
taagaaggaaatgtgtctgtaaaaacattattagacccaactacatggat
ctcagtgactgtggaaagacactgcatgactttactttctggtgtggaaa
ggacagaaccattttagttacttctttttctatcttgatggcacagatgt
gccagcatcttctaaggagtgtcttacgctgccccgcactctgcttcctg
gaagattgtgaagcagttgccagacagaactacttttctcttgtttttca
tgttttctaggaaaacagattccacaagtttctgtggttacctactccat
tgttgaaggaagaactggattctcaaaactcaaattgagagctgtggagt
atgtgggtttttgtgcttttgaaaatgtaattattagaattcacaatagg
ttgtttgatttgaactgtttagtagcttgcagcaagtacttatttggcca
aactgaaaccagaattttcccaaaagaattctcattttcttcactaaatg
tgcatttgttgtgtccttactctggaccaggtactagaatacagacaggg
atcagaagtattccatgctgtgctaaagatggagctcaattgaaggtctg
cgtggcgtccgcagagccctgggttcaggctctagtaccactgaaacccc
aggtggtgatgagtgcataaagtcccagcacttgagaggcgagactggaa
ggctggaaactcaagttcattcttaagaattagagctagggctgtagagt
tggctcagtgtcagagttatttgttgtgcaaggacccaggtcgagttctc
agcacccacattggagctaccacctcaagacagcaactggtggtggccac
agaccaccatgagggcaaacctcttatacccttaaattataaaattctaa
aaatttttaaactgcttactatttatgaattgagtacccacatggttctc
ttcagacacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84628867_84629937
seq2: B6Ng01-278H22.b_49_1113

seq1  GAATTCTTTCCCTGCATGCACAACTGCTTGTACTTTTTGATTACTAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTGCATGCACAACTGCTTGTACTTTTTGATTACTAGTGT  50

seq1  GAAAACCTGCCACTTTTCTTAGTAGAGTTTAGAACCCAGCTCCTAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGCCACTTTTCTTAGTAGAGTTTAGAACCCAGCTCCTAGGCTG  100

seq1  AGGCTTAGAATGAAGCTCAGTATCTGAGCTCTCAGGGAGCGCAGTGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGAATGAAGCTCAGTATCTGAGCTCTCAGGGAGCGCAGTGAGCA  150

seq1  GGCACCCTGCCTGATGACTGAAGAGGTGTAGTCTGCCACGACTGCGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTGCCTGATGACTGAAGAGGTGTAGTCTGCCACGACTGCGCAAA  200

seq1  AGCCCTAGGGCACACCTGTCATTGGAAGCAATATCCATACTCCACATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGGGCACACCTGTCATTGGAAGCAATATCCATACTCCACATGAG  250

seq1  GAACTCCTTTGGGGAGAGGTGAGCATAGCACTCTGTCTGGGGAAGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTTGGGGAGAGGTGAGCATAGCACTCTGTCTGGGGAAGCCATT  300

seq1  CGCTGGGGTTCAAGTGATAGAGAATCTTTAGGACCTACAAGTCAAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGGGTTCAAGTGATAGAGAATCTTTAGGACCTACAAGTCAAATCAA  350

seq1  AGAAAATACGATAAGGAAACTCATAGGCAAAAGTCTTGTGCTCCTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACGATAAGGAAACTCATAGGCAAAAGTCTTGTGCTCCTAAATC  400

seq1  AAGATCACTTTTAACAACAAGGAAGGGGGAATCTATTTTCAGAAGGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACTTTTAACAACAAGGAAGGGGGAATCTATTTTCAGAAGGCCCC  450

seq1  CAAATTTCACTGACTTCTTCTTTCCTTTCTAACATCTTAGAGAAACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCACTGACTTCTTCTTTCCTTTCTAACATCTTAGAGAAACTGAG  500

seq1  TCAGGGTAGAACAATGAGAAGTTTGAGGGTCCTTGGTGACCTAACATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAGAACAATGAGAAGTTTGAGGGTCCTTGGTGACCTAACATCAA  550

seq1  AGCTAGAAGCCTGTATGGTCTCACACATGCTAAAGCAAGCAGATTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAGCCTGTATGGTCTCACACATGCTAAAGCAAGCAGATTTCCTT  600

seq1  CCTCCCTTTTCCTACTACTTAGTTTTGAGACGGGGTCTCACTAAGGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTTCCTACTACTTAGTTTTGAGACGGGGTCTCACTAAGGACTC  650

seq1  AGGCTACCTTTGGACCTTTGGTCTTGTGCCCCAGCCTCCTTCATATCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCTTTGGACCTTTGGTCTTGTGCCCCAGCCTCCTTCATATCTGA  700

seq1  GAGTTCATGTTCATTTGGACTAAACTTCTCAGGTAGCCATCTGCCTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATGTTCATTTGGACTAAACTTCTCAGGTAGCCATCTGCCTATAA  750

seq1  AGAGATGTGTGAGTGAAGAAGAGCTCTACTCTGTGTGTAGCTAATGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGTGAGTGAAGAAGAGCTCTACTCTGTGTGTAGCTAATGGAGG  800

seq1  TGACATCGGTTGTTTCCCATCACCGTTCTCTGTGGTTTCCCAGTGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCGGTTGTTTCCCATCACCGTTCTCTGTGGTTTCCCAGTGCCCTG  850

seq1  GGAGCTCACTGTTTGGCCAGTCTGTCTCCATGCAGCTCTCCCAGGGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACTGTTTGGCCAGTCTGTCTCCATGCAGCTCTCCCAGGGACTC  900

seq1  CATGTTTATCCCCTGCGTGCTGGCATAGCAGCTGGCATTTCCACGGGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATCCCCTGCGTGCTGGCATAGCAGCTGGCATTTCCACGGGTAG  950

seq1  AGAGCTGAACTGTGGTCCTTAGGCTTGCGTGGCAAGCAGTGCCCACAGTG  1000
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGCTG-ACTGTGGTCCTTAGGCTTGCGT-GCAAGCAGTGCCCACAGTG  998

seq1  CTCTCGCTCCACCCCCACAGCTAATTTTCAATGATCTTTCCTAAAG-ACA  1049
      |||||||||||||||||||||||||||   ||||||||| |||||| |||
seq2  CTCTCGCTCCACCCCCACAGCTAATTT--CATGATCTTT-CTAAAGAACA  1045

seq1  GAGTGGCTTGACCTATGACCAC  1071
      |||| || ||| ||||||||||
seq2  GAGTTGC-TGA-CTATGACCAC  1065

seq1: chr17_84780168_84781344
seq2: B6Ng01-278H22.g_65_1227 (reverse)

seq1  TGGTGTGTCTGAAGAGAACAATGGTGGTGTACTCATATTCATAAAATAAG  50
      ||||||||||||||||||| || |||| ||||||| |||||||||   ||
seq2  TGGTGTGTCTGAAGAGAACCAT-GTGG-GTACTCA-ATTCATAAA--TAG  45

seq1  TAAACAAATGTTTTAAAAATATTTTAGATTTTTATTATTTTATGTGTATT  100
      ||| ||     ||||||||| ||||||| ||||| || |||| | |||| 
seq2  TAAGCA----GTTTAAAAAT-TTTTAGAATTTTA-TAATTTAAGGGTATA  89

seq1  AGAGTTTTGCCTTCATGTGTGTCTGTG--CACCA-CAGTTGCTGGTCTTT  147
      |||| |||||| |||||   |||||||  ||||| |||||||| ||| ||
seq2  AGAGGTTTGCCCTCATGGTGGTCTGTGGCCACCACCAGTTGCT-GTC-TT  137

seq1  GAGGTGGTAAGCCTCCATGTGGGTGCTGAG-ACTCGAACCTGGGTCCTTG  196
      |||||||| |||  | |||||||||||||| ||||| |||||||||||||
seq2  GAGGTGGT-AGCTCCAATGTGGGTGCTGAGAACTCG-ACCTGGGTCCTTG  185

seq1  CAACAACAAAT-ACTCTTGACACTGAGCCAACTCTACAGCCCTAGCTTCT  245
      | ||||||||| |||| ||||||||||||||||||||||||||||| |||
seq2  C-ACAACAAATAACTC-TGACACTGAGCCAACTCTACAGCCCTAGC-TCT  232

seq1  AATTCTTAAGAATGAACTTGAGTTTCCAGCCTTCCAGTCTTCGCCTCTCA  295
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATTCTTAAGAATGAACTTGAGTTTCCAGCCTTCCAGTC-TCGCCTCTCA  281

seq1  AGTGCTGGGACTTTATGCACTCATCACCACCTGGGGTTTCAGTGGTACTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGACTTTATGCACTCATCACCACCTGGGGTTTCAGTGGTACTA  331

seq1  GAGCCTGAACCCAGGGCTCTGCGGACGCCACGCAGACCTTCAATTGAGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAACCCAGGGCTCTGCGGACGCCACGCAGACCTTCAATTGAGCT  381

seq1  CCATCTTTAGCACAGCATGGAATACTTCTGATCCCTGTCTGTATTCTAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTAGCACAGCATGGAATACTTCTGATCCCTGTCTGTATTCTAGT  431

seq1  ACCTGGTCCAGAGTAAGGACACAACAAATGCACATTTAGTGAAGAAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCCAGAGTAAGGACACAACAAATGCACATTTAGTGAAGAAAATG  481

seq1  AGAATTCTTTTGGGAAAATTCTGGTTTCAGTTTGGCCAAATAAGTACTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTTTGGGAAAATTCTGGTTTCAGTTTGGCCAAATAAGTACTTG  531

seq1  CTGCAAGCTACTAAACAGTTCAAATCAAACAACCTATTGTGAATTCTAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCTACTAAACAGTTCAAATCAAACAACCTATTGTGAATTCTAAT  581

seq1  AATTACATTTTCAAAAGCACAAAAACCCACATACTCCACAGCTCTCAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTTCAAAAGCACAAAAACCCACATACTCCACAGCTCTCAATT  631

seq1  TGAGTTTTGAGAATCCAGTTCTTCCTTCAACAATGGAGTAGGTAACCACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGAGAATCCAGTTCTTCCTTCAACAATGGAGTAGGTAACCACA  681

seq1  GAAACTTGTGGAATCTGTTTTCCTAGAAAACATGAAAAACAAGAGAAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGTGGAATCTGTTTTCCTAGAAAACATGAAAAACAAGAGAAAAG  731

seq1  TAGTTCTGTCTGGCAACTGCTTCACAATCTTCCAGGAAGCAGAGTGCGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGTCTGGCAACTGCTTCACAATCTTCCAGGAAGCAGAGTGCGGG  781

seq1  GCAGCGTAAGACACTCCTTAGAAGATGCTGGCACATCTGTGCCATCAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTAAGACACTCCTTAGAAGATGCTGGCACATCTGTGCCATCAAGA  831

seq1  TAGAAAAAGAAGTAACTAAAATGGTTCTGTCCTTTCCACACCAGAAAGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGAAGTAACTAAAATGGTTCTGTCCTTTCCACACCAGAAAGTA  881

seq1  AAGTCATGCAGTGTCTTTCCACAGTCACTGAGATCCATGTAGTTGGGTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGCAGTGTCTTTCCACAGTCACTGAGATCCATGTAGTTGGGTCT  931

seq1  AATAATGTTTTTACAGACACATTTCCTTCTTACACTGTACAAAATCTTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTTTTACAGACACATTTCCTTCTTACACTGTACAAAATCTTTC  981

seq1  TACGCGTTTCTCTTTAAGAAGACAAAATAAAGAAGGTGCATAGCAGTAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCGTTTCTCTTTAAGAAGACAAAATAAAGAAGGTGCATAGCAGTAAA  1031

seq1  TCAAATTTTATTTTCCTTTTTAGATTGGATTTCTCGCATGTACCCAGATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTATTTTCCTTTTTAGATTGGATTTCTCGCATGTACCCAGATC  1081

seq1  TACTCATCCACTGTGCCTTTTAAAGAAAATTTCCCTTCAAATATTCCACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCCACTGTGCCTTTTAAAGAAAATTTCCCTTCAAATATTCCACT  1131

seq1  TAGTTTTCCATTTACAAATATCTACAGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  TAGTTTTCCATTTACAAATATCTACAGAATTC  1163