BAC Information

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BAC

Clone NameB6Ng01-279N17
Chromosome17 (Build37)
Map Location 51,166,011 - 51,167,034
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N17.bB6Ng01-279N17.g
ACCGA079729GA079730
length1,1751,029
definitionB6Ng01-279N17.b B6Ng01-279N17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattagtttttcaaagatctatagccaatatctttaaactattc
aaaaatacagaattgaggatccttccagtctccatctgcacctgggagct
acagctgttccacagccctccacacccaaaccttgctcagaagagagctg
atcttctcaggagcgatgacacaggcttacaggcccacaggatgggcaat
ctccaacaagagacagcaagaccaaataacaccagagataaccagatggt
gaaaggcaagcacaagaaccttaccaacagaaactaaggctacttggcat
catcagaacacagttatcccactacagcaagtcctggataccacaacaca
ccagcaaagcaagatttggatttaaaaaaaaatcacatctcatgatgctg
atagaggactttaagaaggacataaataattcccttaaagaaatacagga
gaacacaggccaacaggtagaagcccttacagaggaaacataaaaatccc
ttaaagaattacaggaaaacataaccaaacaggtgaaagaattgaacaaa
accttctaggatctaaaaatggaagtagaaacaataaagaaatcacaaag
ggagacaaccttgagacagataaaccaggaaagagatcaagagtcacaga
tggaagcatcaccaacagaatacaagagatagaagagagaatctcaggtg
cagaacataccatagaaaatattgatacaacagtcaaagaaaatacaaag
tgctaaaagcttttaacccaaaacatgcaagaaatctaggacacagtgag
aagaccagacctaaaggataataggcacagaacagagtaaagagtaccaa
cttaaagggccagtaaatatcttcaacaaaataatagaagaaaacttccc
taacctaagaaagagatgctcatgagcatacaagaagcctatagaagtcc
aaatagattggaccagaaaaactcctcctgtcacatatatcaaacaccaa
atgtacaaagaaagatataatagcagtagggaaaagtcagtacataataa
acacagtctatcagatacacagatgcacacagagaaatataaaagcagaa
gatctggcgaatgtcatacggactaggaccgatgccagtccaggcttaac
taatagcctcagctaaaactcctag
gaattcagagacttattagcataatttaagggagtaatgatttaattttt
tattgtctaagaggaatgtttttcagctttatgtattttcaaccacagag
aagctaggtgtttaggttgtaggaagtataaaatttatgtcagatttgta
aaagcaaactttaggagtgatggaacactaaatatataatttttaaaaat
taaaataagtaatttgggttttttttggtgtaacatttatgcataaatca
ttcgttcagaacagtgattcaaatgattatagacacatttgtgtaaagat
ctttaatactctgctttgtaatacagttttatggatatattttgaatcac
aatttaggtttttcctagtaatttgatttaacactgaaaagcaacatttt
atttctgtttttacaaggttgtctcaaaagaagtaatagacttaactgtt
ttattctaaaaggtaaaataatcctatatatttacaacaaagcaatcaaa
accaaggcatcaacctttttagtaacttctgaattagatcagtatctaaa
gctgtacttggaacaaaaggaagaacatcatctgtactctgaataaattc
ccaggaaatctgcacatgtactttgcttgattataaatacacgttcatgt
ctgttttgatatgtaggcttcatacatgatgatattgtatatttctcatt
gtgtagaggaatgattgtagattggtttgtttatagtgaacttcatagtc
tggcttttggttattattatatagacttgtcaaattgtagcagtggtttc
caaccctttctaatgctgtgcccctttaatacagttcctcatgctgtggt
gaacccagctatacaattatttcattgctacttcataactataattttat
gttggagtataatgtagatatcggatatgtacgatttctgatatgtgact
cagctgaaagggttatttagaccctagatgggacgatgaccaacttgttt
gagaacctatgcatctaaagacgtaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51166011_51167034
seq2: B6Ng01-279N17.g_63_1091 (reverse)

seq1  AACCTAAGTCTTTAGA-GCAAAGGTTCTC-AACCAGTGGGTCATGGTCCC  48
      |||||| ||||||||| ||| |||||||| ||| ||| |||||| |||||
seq2  AACCTACGTCTTTAGATGCATAGGTTCTCAAACAAGTTGGTCATCGTCCC  50

seq1  -TTTAGGGTTTAAATAACCCTTTCA-CTGAGTCACATATCAGAAATCCTA  96
       | |||||| ||||||||||||||| ||||||||||||||||||||| ||
seq2  ATCTAGGGTCTAAATAACCCTTTCAGCTGAGTCACATATCAGAAATCGTA  100

seq1  CATATCCGATATCTACATTATACTCCAACATAAAATTATAGTTATGAAGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCGATATCTACATTATACTCCAACATAAAATTATAGTTATGAAGT  150

seq1  AGCAATGAAATAATTGTATAGCTGGGTTCACCACAGCATGAGGAACTGTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAATAATTGTATAGCTGGGTTCACCACAGCATGAGGAACTGTA  200

seq1  TTAAAGGGGCACAGCATTAGAAA-GGTTGGAAACCACTGCTACAATTTGA  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAAGGGGCACAGCATTAGAAAGGGTTGGAAACCACTGCTACAATTTGA  250

seq1  CAAGTCTATATAATAATAACCAAAAGCCAGACTATGAAGTTCACTATAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTATATAATAATAACCAAAAGCCAGACTATGAAGTTCACTATAAA  300

seq1  CAAACCAATCTACAATCATTCCTCTACACAATGAGAAATATACAATATCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATCTACAATCATTCCTCTACACAATGAGAAATATACAATATCA  350

seq1  TCATGTATGAAGCCTACATATCAAAACAGACATGAACGTGTATTTATAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATGAAGCCTACATATCAAAACAGACATGAACGTGTATTTATAAT  400

seq1  CAAGCAAAGTACATGTGCAGATTTCCTGGGAATTTATTCAGAGTACAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGTACATGTGCAGATTTCCTGGGAATTTATTCAGAGTACAGAT  450

seq1  GATGTTCTTCCTTTTGTTCCAAGTACAGCTTTAGATACTGATCTAATTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTCCTTTTGTTCCAAGTACAGCTTTAGATACTGATCTAATTCA  500

seq1  GAAGTTACTAAAAAGGTTGATGCCTTGGTTTTGATTGCTTTGTTGTAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACTAAAAAGGTTGATGCCTTGGTTTTGATTGCTTTGTTGTAAAT  550

seq1  ATATAGGATTATTTTACCTTTTAGAATAAAACAGTTAAGTCTATTACTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGATTATTTTACCTTTTAGAATAAAACAGTTAAGTCTATTACTTC  600

seq1  TTTTGAGACAACCTTGTAAAAACAGAAATAAAATGTTGCTTTTCAGTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAACCTTGTAAAAACAGAAATAAAATGTTGCTTTTCAGTGTT  650

seq1  AAATCAAATTACTAGGAAAAACCTAAATTGTGATTCAAAATATATCCATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATTACTAGGAAAAACCTAAATTGTGATTCAAAATATATCCATA  700

seq1  AAACTGTATTACAAAGCAGAGTATTAAAGATCTTTACACAAATGTGTCTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATTACAAAGCAGAGTATTAAAGATCTTTACACAAATGTGTCTA  750

seq1  TAATCATTTGAATCACTGTTCTGAACGAATGATTTATGCATAAATGTTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTGAATCACTGTTCTGAACGAATGATTTATGCATAAATGTTAC  800

seq1  ACCAAAAAAAACCCAAATTACTTATTTTAATTTTTAAAAATTATATATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAACCCAAATTACTTATTTTAATTTTTAAAAATTATATATTT  850

seq1  AGTGTTCCATCACTCCTAAAGTTTGCTTTTACAAATCTGACATAAATTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCATCACTCCTAAAGTTTGCTTTTACAAATCTGACATAAATTTT  900

seq1  ATACTTCCTACAACCTAAACACCTAGCTTCTCTGTGGTTGAAAATACATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCTACAACCTAAACACCTAGCTTCTCTGTGGTTGAAAATACATA  950

seq1  AAGCTGAAAAACATTCCTCTTAGACAATAAAAAATTAAATCATTACTCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAAACATTCCTCTTAGACAATAAAAAATTAAATCATTACTCCC  1000

seq1  TTAAATTATGCTAATAAGTCTCTGAATTC  1024
      |||||||||||||||||||||||||||||
seq2  TTAAATTATGCTAATAAGTCTCTGAATTC  1029