BAC Information

Click to search

BAC

Clone NameB6Ng01-280J21
Chromosome17 (Build37)
Map Location 41,115,227 - 41,116,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
Downstream geneLdha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280J21.bB6Ng01-280J21.g
ACCGA080300GA080301
length1,2241,136
definitionB6Ng01-280J21.b B6Ng01-280J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacactgtccaacatcaaggtatgctgcaaagttgtaagaagca
aaatcatgaaatgttaacatgaaaacagacatagagagcaaaagaacaga
aagagggcaagaaaggagaaataaataaataaaactttcatcacacccaa
ctgtttttttgacaatggagctaaatacattggagaatggacaacctctt
taatagatgatacttgaaaactagacacaggtagattatttaaattacat
tcttgtttcttactatgtaatattgaccccaaatttgataaatatattaa
tgtaatcaatataacttaatgcaacattatctactaaaggaagtcttaat
gaaaatatttcaaaatgtttgtataggcagcaattttcaaactatgaaat
tgtacatagcagagaaaataatcagtacagggcaaaaataatatataaag
ttagaaaatgtatattatccactgggggaaaacatttaaactagaatatc
taaataactttagaaaaatcaataaataaaaatcccacaaaaatcaaaat
aaaaataaaaacaggttaaaatagagtcagaaatttatcaaaaatagtca
aatactttaggtatcagtggaatggaaatatgaaccagagtgaaatcatc
tcttctcatttgcaattgtttttatcaaaacttttaaaaaaatggccagt
gccaggaaagatgttgagcagatgggatgcttatacactgttggtgggaa
tgtgaattagcatgtccactataaaggacagtatgaaacttcccggaaaa
attaaaaatagatccgccatgtgattcaactgttgaacagctgggtttat
atcaagaaggaacagcatttgcatatctaagagaacacttcacaaaagca
aagatgtgcccttagtccagatagcaaaaaaataatagctaaagacaatg
aggtatgtgtattgtatttgttaactggataaaaatattggaaaagccat
tcagaaaggaagtcaaaaacaggaaagacatgatcattatcataaaggac
atttctgtttataaagtcaaaaggggaaataatgttcacatagatcatag
tagtgacggagtgaagttacaagatgacaaaagaaagctgatggagtagg
aaagagtattaagtcaaaatgatatgtgaagggcaaatcgtttccttaaa
tatctccaaggaagaagatgatga
gaattctgttgtatagacccatccttgatttacattgactcattttaact
ttttattttttcttggcctgtgccatctcatttcaaattttgtattgtgt
tgagctcttactatttacaatgagaccaagctatgaaatagagtctgttt
aacacattaataattatttggatttaaatacttaaaaagggaactgcaga
aatcaataatttgtttagtgataattcttaattattaaaacagaggtaaa
cttttttcattgtaatgtgtttttctttgactagtaatttgtaattatat
tttctaattgttaaattctaatattacaacttaaaaaaataggattgtct
tctattttgctgttgtgacttttggtgttttgagacatggtctcattgct
ctcttgatcctcaccctgttaagtggggaatcataggctggaaccctaga
catgacttcttccctctcttaaatttggcacaaagcaaaattcataacct
catatgtccgtgaagacagcttttctgttcagtgttcctgtgatgttaag
cttcatccacagttgcttagaggggtacaagaccagagcaatacagtgtt
atccttagattccatgagccatcgttctttgacttcatgcatttctttct
tcctgtccctcaaatgatgtcagtcttgtcagaccatatggtcgtcagag
caatattagtgacaattttctgccagagagaataaatcattatccagaca
ttaagtattgaagaacacaaagcagctgctctctgacaagctccttttga
tttaaggcaattatgcatttaaaaatactccccatgattataaatatacc
tgggaaaaagctgagtatgaagtgtttgtcttaatatatatttatagcca
ctaagagagtcattactaattttgagatcaactccagggtggtatttaca
ttgtcaccatgcactgtaagatctgagtggttgtttttctattaatgaaa
gatgatagagacccacgatctgtttagtagaaagactgaaatgatgcata
ttgcagtcttttttaagagattgtagtctagccaacatgactgctcctgc
aagtgatttataccaagaattggatctggcaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41115227_41116331
seq2: B6Ng01-280J21.g_67_1202

seq1  GAATTCTGTTGTATAGACCCATCCTTGATTTACATTGACTCATTTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGTATAGACCCATCCTTGATTTACATTGACTCATTTTAACT  50

seq1  TTTTATTTTTTCTTGGCCTGTGCCATCTCATTTCAAATTTTGTATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTCTTGGCCTGTGCCATCTCATTTCAAATTTTGTATTGTGT  100

seq1  TGAGCTCTTACTATTTACAATGAGACCAAGCTATGAAATAGAGTCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTACTATTTACAATGAGACCAAGCTATGAAATAGAGTCTGTTT  150

seq1  AACACATTAATAATTATTTGGATTTAAATACTTAAAAAGGGAACTGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAATAATTATTTGGATTTAAATACTTAAAAAGGGAACTGCAGA  200

seq1  AATCAATAATTTGTTTAGTGATAATTCTTAATTATTAAAACAGAGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAATTTGTTTAGTGATAATTCTTAATTATTAAAACAGAGGTAAA  250

seq1  CTTTTTTCATTGTAATGTGTTTTTCTTTGACTAGTAATTTGTAATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCATTGTAATGTGTTTTTCTTTGACTAGTAATTTGTAATTATAT  300

seq1  TTTCTAATTGTTAAATTCTAATATTACAACTTAAAAAAATAGGATTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTGTTAAATTCTAATATTACAACTTAAAAAAATAGGATTGTCT  350

seq1  TCTATTTTGCTGTTGTGACTTTTGGTGTTTTGAGACATGGTCTCATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGCTGTTGTGACTTTTGGTGTTTTGAGACATGGTCTCATTGCT  400

seq1  CTCTTGATCCTCACCCTGTTAAGTGGGGAATCATAGGCTGGAACCCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATCCTCACCCTGTTAAGTGGGGAATCATAGGCTGGAACCCTAGA  450

seq1  CATGACTTCTTCCCTCTCTTAAATTTGGCACAAAGCAAAATTCATAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCTTCCCTCTCTTAAATTTGGCACAAAGCAAAATTCATAACCT  500

seq1  CATATGTCCGTGAAGACAGCTTTTCTGTTCAGTGTTCCTGTGATGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCCGTGAAGACAGCTTTTCTGTTCAGTGTTCCTGTGATGTTAAG  550

seq1  CTTCATCCACAGTTGCTTAGAGGGGTACAAGACCAGAGCAATACAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCACAGTTGCTTAGAGGGGTACAAGACCAGAGCAATACAGTGTT  600

seq1  ATCCTTAGATTCCATGAGCCATCGTTCTTTGACTTCATGCATTTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGATTCCATGAGCCATCGTTCTTTGACTTCATGCATTTCTTTCT  650

seq1  TCCTGTCCCTCAAATGATGTCAGTCTTGTCAGACCATATGGTCGTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCTCAAATGATGTCAGTCTTGTCAGACCATATGGTCGTCAGAG  700

seq1  CAATATTAGTGACAATTTTCTGCCAGAGAGAATAAATCATTATCCAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTAGTGACAATTTTCTGCCAGAGAGAATAAATCATTATCCAGACA  750

seq1  TTAAGTATTGAAGAACACAAAGCAGCTGCTCTCTGACAAGCTCCTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTGAAGAACACAAAGCAGCTGCTCTCTGACAAGCTCCTTTTGA  800

seq1  TTTAAGGCAATTATGCATTTAAAAATACTCCCCATGATTATAAATATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCAATTATGCATTTAAAAATACTCCCCATGATTATAAATATACC  850

seq1  T-GGAAAAAGCTGAGTATGAAGGTGTTTGTCTTAATATATATTTATAGCC  899
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGGAAAAAGCTGAGTATGAA-GTGTTTGTCTTAATATATATTTATAGCC  899

seq1  ACTAAGAGAGTCATTACTAATTTTGAGATCAACTCCAGGGTGGTATTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGAGTCATTACTAATTTTGAGATCAACTCCAGGGTGGTATTTAC  949

seq1  ATTGTCACCATGCACTGTAAGATCTGAGTGGT--GTTTTCTATTTAATGA  997
      ||||||||||||||||||||||||||||||||   ||||||| |||||| 
seq2  ATTGTCACCATGCACTGTAAGATCTGAGTGGTTGTTTTTCTA-TTAATG-  997

seq1  AAAGATGATAGAGACCCACGAATCTGTTTAGTAGAAAGACTGAAATGATG  1047
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGATGATAGAGACCCACG-ATCTGTTTAGTAGAAAGACTGAAATGATG  1046

seq1  CATA-TGCAGTCTTTTTAGAGGAATTGTAGTCTAG-CAACATGACTGCTC  1095
      |||| ||||||||||||  ||  |||||||||||| ||||||||||||||
seq2  CATATTGCAGTCTTTTTTAAGAGATTGTAGTCTAGCCAACATGACTGCTC  1096

seq1  TGGCAAGTGA------------------------------  1105
        ||||||||                              
seq2  CTGCAAGTGATTTATACCAAGAATTGGATCTGGCAAGTGA  1136