BAC Information

Click to search

BAC

Clone NameB6Ng01-280K13
Chromosome17 (Build37)
Map Location 84,195,805 - 84,223,048
singlet/doubletdoublet
Overlap geneMta3
Upstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
Downstream geneHaao, Zfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280K13.bB6Ng01-280K13.g
ACCGA080330GA080331
length2171,174
definitionB6Ng01-280K13.b B6Ng01-280K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,222,832 - 84,223,048)(84,195,805 - 84,196,976)
sequence
cagaaatttattggaaacacaatacaaactgacaaatagatggcctctcc
tacggacagacaggccacactggcacggcgtgggggagagctttcccaag
agcactgaggccagctctggttcgtgctcgtggcggggggggggggggga
ccataaactgggaggagaggaacaggcaggggtgtacacagaaaccatga
catggctttctagaggg
gaattcagctttgcaagtatccatggggtcttcaaaacaaaatttattgt
tagcaactgcacacactttcctgaagtgctcagctcgagagcagcgggag
ggttgttctcttgctgggtttgtttgttttgttttgtttttaaatagtgt
ttgcctttaataggaatttgtttttcaatggttacttaaatttaattttt
cttacatttattttattatatgtatatgagtttttgcctgcatgtatgta
tggcacatggaagtcaaaagaggcggggtcagatccccataggcctagag
ttacaggtggttgtgagcaacaatatggcggctgggaacctaagctggtt
cttccgcaagagtcacaagtgcttgtaactgctgtgcccttaaacttgta
agtgctctgtcccttaattttttttttcttttaagttatggaagtggctt
caaatcgcataatcttttttttttcccctttctgataaatattcttcaga
ggcaactactgtcgtgatgcgttttgaattttaatagccattgcctccta
gaaacccagcttatattcccaactactatcttgagtggacgaatgcccac
ggctgaagaagcttggcagaggtgtaccccacctttccctcatgcagctg
atggatgagacatagctgctagcttccatcttgcgttttactagtgaaac
agaaatcattgcggagatctgaaaggcatttacatttctggtcaattatg
tttgctcctttctgttttctattagaagtcttcctgaactctggaaacct
tagcaagggtacttctagatctgtggtgctaacactcccttcctattttg
tatttgtctgtactgtattttctaacacccccaccccgtctctctccccc
acttcagtgggggggtgggggacagggtcttctatgtagaccaggctaac
ctcaaactcacaaagaccttgccctgcctctgcctccaaggagctaagaa
ttaaaggcatgtaccactacactggggctaaacgtttcttatcaaaactg
aatctctgtttggtttctattatgattttgttttgacagagatctggaaa
gaaccatgttagtttgttttttttttaagaatttttactttgaagggagt
gtgcgtgctactcaggtgggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84222832_84223048
seq2: B6Ng01-280K13.b_51_267 (reverse)

seq1  CCCTCTAGAAAGCCATGTCCTGGTTTCTGTGTACACCCCTGCCTGTTCCT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTCTAGAAAGCCATGTCATGGTTTCTGTGTACACCCCTGCCTGTTCCT  50

seq1  CTCCTCCCAGTTTCTGGTCCCCCCCCCCCCCCCGCCACGAGCACGAACCA  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCAGTTTATGGTCCCCCCCCCCCCCCCGCCACGAGCACGAACCA  100

seq1  GAGCTGGCCTCAGTGCTCTTGGGAAAGCTCTCCCCCACGCCGTGCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCCTCAGTGCTCTTGGGAAAGCTCTCCCCCACGCCGTGCCAGTG  150

seq1  TGGCCTGTCTGTCCGTAGGAGAGGCCATCTATTTGTCAGTTTGTATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTCTGTCCGTAGGAGAGGCCATCTATTTGTCAGTTTGTATTGTG  200

seq1  TTTCCAATAAATTTCTG  217
      |||||||||||||||||
seq2  TTTCCAATAAATTTCTG  217

seq1: chr17_84195805_84196976
seq2: B6Ng01-280K13.g_68_1241

seq1  GAATTCAGCTTTGCAAGTATCCATGGGGTCTTCAAAACAAAATTTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTGCAAGTATCCATGGGGTCTTCAAAACAAAATTTATTGT  50

seq1  TAGCAACTGCACACACTTTCCTGAAGTGCTCAGCTCGAGAGCAGCGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTGCACACACTTTCCTGAAGTGCTCAGCTCGAGAGCAGCGGGAG  100

seq1  GGTTGTTCTCTTGCTGGGTTTGTTTGTTTTGTTTTGTTTTTAAATAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCTCTTGCTGGGTTTGTTTGTTTTGTTTTGTTTTTAAATAGTGT  150

seq1  TTGCCTTTAATAGGAATTTGTTTTTCAATGGTTACTTAAATTTAATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTAATAGGAATTTGTTTTTCAATGGTTACTTAAATTTAATTTTT  200

seq1  CTTACATTTATTTTATTATATGTATATGAGTTTTTGCCTGCATGTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTATTTTATTATATGTATATGAGTTTTTGCCTGCATGTATGTA  250

seq1  TGGCACATGGAAGTCAAAAGAGGCGGGGTCAGATCCCCATAGGCCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATGGAAGTCAAAAGAGGCGGGGTCAGATCCCCATAGGCCTAGAG  300

seq1  TTACAGGTGGTTGTGAGCAACAATATGGCGGCTGGGAACCTAAGCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTGGTTGTGAGCAACAATATGGCGGCTGGGAACCTAAGCTGGTT  350

seq1  CTTCCGCAAGAGTCACAAGTGCTTGTAACTGCTGTGCCCTTAAACTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCAAGAGTCACAAGTGCTTGTAACTGCTGTGCCCTTAAACTTGTA  400

seq1  AGTGCTCTGTCCCTTAATTTTTTTTTTCTTTTAAGTTATGGAAGTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTGTCCCTTAATTTTTTTTTTCTTTTAAGTTATGGAAGTGGCTT  450

seq1  CAAATCGCATAATCTTTTTTTTTTCCCCTTTCTGATAAATATTCTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGCATAATCTTTTTTTTTTCCCCTTTCTGATAAATATTCTTCAGA  500

seq1  GGCAACTACTGTCGTGATGCGTTTTGAATTTTAATAGCCATTGCCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTACTGTCGTGATGCGTTTTGAATTTTAATAGCCATTGCCTCCTA  550

seq1  GAAACCCAGCTTATATTCCCAACTACTATCTTGAGTGGACGAATGCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGCTTATATTCCCAACTACTATCTTGAGTGGACGAATGCCCAC  600

seq1  GGCTGAAGAAGCTTGGCAGAGGTGTACCCCACCTTTCCCTCATGCAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGAAGCTTGGCAGAGGTGTACCCCACCTTTCCCTCATGCAGCTG  650

seq1  ATGGATGAGACATAGCTGCTAGCTTCCATCTTGCGTTTTACTAGTGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAGACATAGCTGCTAGCTTCCATCTTGCGTTTTACTAGTGAAAC  700

seq1  AGAAATCATTGCGGAGATCTGAAAGGCATTTACATTTCTGGTCAATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATTGCGGAGATCTGAAAGGCATTTACATTTCTGGTCAATTATG  750

seq1  TTTGCTCCTTTCTGTTTTCTATTAGAAGTCTTCCTGAACTCTGGAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCTTTCTGTTTTCTATTAGAAGTCTTCCTGAACTCTGGAAACCT  800

seq1  TAGCAAGGGTACTTCTAGATCTGTGGTGCTAACACTCCCTTCCTATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGGTACTTCTAGATCTGTGGTGCTAACACTCCCTTCCTATTTTG  850

seq1  TATTTGTCTGTACTGTATTTTCTAACACCCCCACCCCGTCTCTCTCCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTGTACTGTATTTTCTAACACCCCCACCCCGTCTCTCTCCCCC  900

seq1  ACCTCAGTGGGGGG--TGGGGACAGGGTC-TCTATGTAGACCAGGCTAAC  947
      || |||||||||||   |||||||||||| ||||||||||||||||||||
seq2  ACTTCAGTGGGGGGGTGGGGGACAGGGTCTTCTATGTAGACCAGGCTAAC  950

seq1  CTCAAACTCACAAAGACCT--GCCTGCCTCTGCCTCCAAAGAGCTAAG-A  994
      |||||||||||||||||||   ||||||||||||||||| |||||||| |
seq2  CTCAAACTCACAAAGACCTTGCCCTGCCTCTGCCTCCAAGGAGCTAAGAA  1000

seq1  TTAAAGGCATGTACCACTACACT-GGGCTAAACGTTTC-TATCAAAAACT  1042
      ||||||||||||||||||||||| |||||||||||||| |||| ||||||
seq2  TTAAAGGCATGTACCACTACACTGGGGCTAAACGTTTCTTATC-AAAACT  1049

seq1  GAGTCCTCTGTTTTGTTTCTATTAATGATTTTG-TTTGACAGAGATCTGA  1091
      || | |||||||| ||||||||| ||||||||| ||||||||||||||| 
seq2  GAAT-CTCTGTTTGGTTTCTATT-ATGATTTTGTTTTGACAGAGATCTGG  1097

seq1  AAAG-ACCATGTTAGTTTTGTTTTTTTTTTTAAAGAA-TTTTACTTTGTA  1139
      |||| |||||||||| ||||||||||||||  ||||| |||||||||| |
seq2  AAAGAACCATGTTAG-TTTGTTTTTTTTTT--AAGAATTTTTACTTTG-A  1143

seq1  TGTGAGTGTGCGTGTGTTTACTCATGT-GGAGAG  1172
       | |||||||||||    |||||| || ||||||
seq2  AGGGAGTGTGCGTG---CTACTCAGGTGGGAGAG  1174