BAC Information

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BAC

Clone NameB6Ng01-281J22
Chromosome17 (Build37)
Map Location 92,438,857 - 92,581,261
singlet/doubletdoublet
Overlap geneEG640442
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
Downstream geneLOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281J22.bB6Ng01-281J22.g
ACCGA081050GA081051
length1,213970
definitionB6Ng01-281J22.b B6Ng01-281J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,438,857 - 92,440,059)(92,580,274 - 92,581,261)
sequence
gaattcagggatcaaaaaggcatggaaaaatttgaacgtcatgtcgagct
ggtatcagcttctggaacaccgaaagggtctcccatctcagctccatcgt
ttgtgcttgtgggatcatccaccacatccacaggggcaactggatcagga
gcctcattcttgcagcgcctcaccaatctctccggcacccaaagaggttc
tgtctggtcctgtggaaacacacaaacagaccatcctgcccacatcaaca
ccggatctggtcgatccccaggggagatggacacaataccttgtggtgat
gaggccataacttcaatcacctgtgtgtccatctggggagtcaatatgag
agtcaagttttcactagcttcccctctgttgggcaatgatttccgcgacc
ttatggcaatctgattcacctgctcaaatacctgcagtggatatcctgtc
tgttgttgtgcacagcgaccttgaccaagcagcatatccctatcccatgc
tggatttcctgcagcagagttagccactgcctgttcatttgtaaattcaa
taaggaaggctttccaatctaaatactacccaggtgaaaggcatgtcttc
actaagcctgccccatctgacagcattatgcagtgtctattcaaggtctc
tacttgagccacactataggagacagttaagccgtatgtctgcacggact
cagccaaattcctaattaccttgaaatctagaggctcatgatatctctgc
cttgtttggtcggtgaaaacaggacatcccagcaaggagaatctaacctc
tctccaaatctccggacagaaggtccgcctataggtggctgctgaggagg
catagggagaggacgcagaagctaattcgccttcctcctccacctcgact
cttttattttgtcctttctgtccacctgataacactgtgtctccttcttt
ttcctttttctttttaagcccttcttcttttccgacatactttcttgttg
gtctgtaaggattttctgactgtcttgactgcctctcgattcaaacaagt
aacagagtccatatatcagaacaaacaggaccgaaacttatcagactacc
cacaaagggtcaaatggggagaaaaagcataactacaccaggcgaggatc
tattggattcacttacctgaggttattcaaggtttccttaaactttggtc
ccacaaaccatga

gaattcctgatctttccaaaacttttatcatgaatgggtgttagatcttg
tcaaatgctttttcttcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatgttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttatttttttttttatttctacatatatttttattatggcaaaggtgaaa
atgccaccttcacaaaagcaagcactacaatttatccataaaataacgca
gtacaaaaccggtgtatttcagaattaaaaaaagaaagaaagaaagaaag
aaagagagaaagaaagagctttacttgggttttaaaacaggagaaaagaa
aaagaaaaagaagcaaaggaggaatccaccattgtctaaaagttccagta
accaagccttggtctaggtgtcacagaccaggcctctgggtcccattctt
gtgcagctttgctcagttgtttagctggtgtccattatttcccaataagt
atccagctgggcgtccaactcctctgcagatagctgcttttgctcctgct
gctgctgctgctgctgcttctttgagttcttgctggttcctcctcttccc
tggctgtctccaagtgtctcgcttctggtgcctccaccaccataccctcc
agagccagggtttcttggcatgccgccccttttctgctttgtgcaggtct
tggtcgtgtatcaatcgttgaggtgacagtctggatgttcatagggcggc
catccaaaggggacgccattgtactgtctcatagcctttcagggcatctg
ctttcctttcttttttttttttttaaggatataatttattttatttattt
tttggtttgtttttttgtggcagtctcttccatttataggaattagctct
ttacattttaatgctatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_92438857_92440059
seq2: B6Ng01-281J22.b_46_1258

seq1  GAATTCAGGGATCAAAAAGGCATGGAAAAATTTGAACGTCATGTCGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATCAAAAAGGCATGGAAAAATTTGAACGTCATGTCGAGCT  50

seq1  GGTATCAGCTTCTGGAACACCGAAAGGGTCTCCCATCTCAGCTCCATCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGCTTCTGGAACACCGAAAGGGTCTCCCATCTCAGCTCCATCGT  100

seq1  TTGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150

seq1  GCCTCATTCTTGCAGCGCCTCACCAATCTCTCCGGCACCCAAAGAGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTCTTGCAGCGCCTCACCAATCTCTCCGGCACCCAAAGAGGTTC  200

seq1  TGTCTGGTCCTGTGGAAACACACAAACAGACCATCCTGCCCACATCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCCTGTGGAAACACACAAACAGACCATCCTGCCCACATCAACA  250

seq1  CCGGATCTGGTCGATCCCCAGGGGAGATGGACACAATACCTTGTGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCTGGTCGATCCCCAGGGGAGATGGACACAATACCTTGTGGTGAT  300

seq1  GAGGCCATAACTTCAATCACCTGTGTGTCCATCTGGGGAGTCAATATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATAACTTCAATCACCTGTGTGTCCATCTGGGGAGTCAATATGAG  350

seq1  AGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCGCGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCGCGACC  400

seq1  TTATGGCAATCTGATTCACCTGCTCAAATACCTGCAGTGGATATCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCAATCTGATTCACCTGCTCAAATACCTGCAGTGGATATCCTGTC  450

seq1  TGTTGTTGTGCACAGCGACCTTGACCAAGCAGCATATCCCTATCCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTGCACAGCGACCTTGACCAAGCAGCATATCCCTATCCCATGC  500

seq1  TGGATTTCCTGCAGCAGAGTTAGCCACTGCCTGTTCATTTGTAAATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCTGCAGCAGAGTTAGCCACTGCCTGTTCATTTGTAAATTCAA  550

seq1  TAAGGAAGGCTTTCCAATCTAAATACTACCCAGGTGAAAGGCATGTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGGCTTTCCAATCTAAATACTACCCAGGTGAAAGGCATGTCTTC  600

seq1  ACTAAGCCTGCCCCATCTGACAGCATTATGCAGTGTCTATTCAAGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCCTGCCCCATCTGACAGCATTATGCAGTGTCTATTCAAGGTCTC  650

seq1  TACTTGAGCCACACTATAGGAGACAGTTAAGCCGTATGTCTGCACGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGCCACACTATAGGAGACAGTTAAGCCGTATGTCTGCACGGACT  700

seq1  CAGCCAAATTCCTAATTACCTTGAAATCTAGAGGCTCATGATATCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAATTCCTAATTACCTTGAAATCTAGAGGCTCATGATATCTCTGC  750

seq1  CTTGTTTGGTCGGTGAAAACAGGACATCCCAGCAAGGAGAATCTAACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGGTCGGTGAAAACAGGACATCCCAGCAAGGAGAATCTAACCTC  800

seq1  TCTCCAAATCTCCGGACAGAAGGTCCGCCTATAGGTGGCTGCTGAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATCTCCGGACAGAAGGTCCGCCTATAGGTGGCTGCTGAGGAGG  850

seq1  CATAGGGAGAGGACGCAGAAGCTAATTCGCCTTCCTCCTCCACCTCGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGAGAGGACGCAGAAGCTAATTCGCCTTCCTCCTCCACCTCGACT  900

seq1  CTTTTATTTTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCCTTTCTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTATTTTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCC-TTCTT  949

seq1  TTTCCTTTTTCTTTTTAAGCCCTTCTCCTTTTCCGACATACTTTCTTGTT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCCTTTTTCTTTTTAAGCCCTTCTTCTTTTCCGACATACTTTCTTGTT  999

seq1  GGTCTGTAAGGATTTTCTGACCTGTCTTGACTGCCTCTCGATTCAAAC-A  1049
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GGTCTGTAAGGATTTTCTGA-CTGTCTTGACTGCCTCTCGATTCAAACAA  1048

seq1  GTAACAGAGTCCATATATCAGAACAAACAAGACCAAAAC-TATCAGACCT  1098
      ||||||||||||||||||||||||||||| |||| |||| ||||||| ||
seq2  GTAACAGAGTCCATATATCAGAACAAACAGGACCGAAACTTATCAGA-CT  1097

seq1  ACCCACAAAGGGTC-AATGGGAGAAAAAAGCATAACTACAC--AGCGAGG  1145
      |||||||||||||| ||||||   |||||||||||||||||   ||||||
seq2  ACCCACAAAGGGTCAAATGGGGAGAAAAAGCATAACTACACCAGGCGAGG  1147

seq1  ATCTATTG--ATCACTACACTGAGGTTATCATAG--TTCCTT-AACTT--  1188
      ||||||||   |||||   ||||||||||   ||  |||||| |||||  
seq2  ATCTATTGGATTCACTTACCTGAGGTTATTCAAGGTTTCCTTAAACTTTG  1197

seq1  GTCCCA-AAACCATGA  1203
      |||||| |||||||||
seq2  GTCCCACAAACCATGA  1213


seq1: chr17_92580274_92581261
seq2: B6Ng01-281J22.g_64_1033 (reverse)

seq1  GGTATAGCATTTAAAATGTAAATGAGCTAAATACCTAATAAAAATGGAAA  50
      ||||||||| |||||||||||| ||||||| | |    || |||||||| 
seq2  GGTATAGCA-TTAAAATGTAAA-GAGCTAATTCC----TATAAATGGAAG  44

seq1  AAAAAACAACAACAAAAAAAAACAAAACAAAAAAAATAAAATAAAAATAA  100
      | |   | |||| |||| ||| |||   |||| |||||||||       |
seq2  AGACTGCCACAAAAAAACAAACCAA---AAAATAAATAAAAT-------A  84

seq1  AATTATATCTTAAAAAAAAAAAAAAAAAAAGAAAGGAAAGCAGATGCCCT  150
      ||||||||| |     ||||||||||||||||||||||||||||||||||
seq2  AATTATATCCT----TAAAAAAAAAAAAAAGAAAGGAAAGCAGATGCCCT  130

seq1  G-AAGGCTATGAGACAGTACAATGGCGT-CCCTTTGGATGGCCGCCCTAT  198
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAAGGCTATGAGACAGTACAATGGCGTCCCCTTTGGATGGCCGCCCTAT  180

seq1  GAACATCCAGACTGTCACCTCAACGATTGATACACGACCAAGACCTGCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCCAGACTGTCACCTCAACGATTGATACACGACCAAGACCTGCAC  230

seq1  AAAGCAGAAAAGGGGCGGCATGCCAAGAAACCCTGGCTCTGGAGGGTATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAAGGGGCGGCATGCCAAGAAACCCTGGCTCTGGAGGGTATG  280

seq1  GTGGTGGAGGCACCAGAAGCGAGACACTTGGAGACAGCCAGGGAAGAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAGGCACCAGAAGCGAGACACTTGGAGACAGCCAGGGAAGAGGA  330

seq1  GGAACCAGCAAGAACTCAAAGAAGCAGCAGCAGCAGCAGCAGCAGGAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGCAAGAACTCAAAGAAGCAGCAGCAGCAGCAGCAGCAGGAGCA  380

seq1  AAAGCAGCTATCTGCAGAGGAGTTGGACGCCCAGCTGGATACTTATTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTATCTGCAGAGGAGTTGGACGCCCAGCTGGATACTTATTGGG  430

seq1  AAATAATGGACACCAGCTAAACAACTGAGCAAAGCTGCACAAGAATGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGGACACCAGCTAAACAACTGAGCAAAGCTGCACAAGAATGGGA  480

seq1  CCCAGAGGCCTGGTCTGTGACACCTAGACCAAGGCTTGGTTACTGGAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGCCTGGTCTGTGACACCTAGACCAAGGCTTGGTTACTGGAACT  530

seq1  TTTAGACAATGGTGGATTCCTCCTTTGCTTCTTTTTCTTTTTCTTTTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACAATGGTGGATTCCTCCTTTGCTTCTTTTTCTTTTTCTTTTCTC  580

seq1  CTGTTTTAAAACCCAAGTAAAGCTCTTTCTTTCTCTCTTTCTTTCTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAAACCCAAGTAAAGCTCTTTCTTTCTCTCTTTCTTTCTTTCT  630

seq1  TTCTTTCTTTTTTTAATTCTGAAATACACCGGTTTTGTACTGCGTTATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTTTAATTCTGAAATACACCGGTTTTGTACTGCGTTATTT  680

seq1  TATGGATAAATTGTAGTGCTTGCTTTTGTGAAGGTGGCATTTTCACCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATAAATTGTAGTGCTTGCTTTTGTGAAGGTGGCATTTTCACCTTT  730

seq1  GCCATAATAAAAATATATGTAGAAATAAAAAAAAAAATAAAGCAATCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAATAAAAATATATGTAGAAATAAAAAAAAAAATAAAGCAATCATC  780

seq1  CATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATAT  830

seq1  ACGAACATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA  880

seq1  ACCACATGATCATCTCGTTAGATGAAGAAAAAGCATTTGACAAGATCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGATCATCTCGTTAGATGAAGAAAAAGCATTTGACAAGATCTAA  930

seq1  CACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  970


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